Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35962 * 117.00291 * 2 1 4 4 C 1.38318 * 119.98960 * 0.29759 * 3 2 1 5 5 C 1.39606 * 119.81460 * 180.31397 * 4 3 2 6 6 C 1.47744 * 120.09578 * 179.67937 * 5 4 3 7 7 O 1.21568 * 119.99778 * 6.90618 * 6 5 4 8 8 N 1.34779 * 119.99743 * 186.90409 * 6 5 4 9 9 C 1.47019 * 125.65262 * 354.31329 * 8 6 5 10 10 C 1.54318 * 107.40415 * 181.10323 * 9 8 6 11 11 H 1.08999 * 110.72360 * 263.75962 * 10 9 8 12 12 N 1.46501 * 110.72321 * 140.47768 * 10 9 8 13 13 C 1.36934 * 119.99818 * 86.45212 * 12 10 9 14 14 H 1.08001 * 120.00138 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00370 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99667 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00354 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47132 * 59.99853 * 17 15 13 19 19 H 1.48497 * 109.46812 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46540 * 299.99518 * 17 15 13 21 21 C 1.55159 * 102.94158 * 22.11561 * 10 9 8 22 22 C 1.47741 * 125.81669 * 174.22423 * 8 6 5 23 23 H 1.08997 * 110.43557 * 274.70175 * 22 8 6 24 24 C 1.53004 * 110.38895 * 36.97815 * 22 8 6 25 25 C 1.39645 * 119.80968 * 359.41019 * 5 4 3 26 26 C 1.37889 * 119.97781 * 0.27677 * 25 5 4 27 27 C 1.38525 * 120.18517 * 0.02562 * 26 25 5 28 28 F 1.35093 * 119.90853 * 179.97438 * 27 26 25 29 29 H 1.08994 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47006 * 300.00310 * 1 2 3 31 31 H 1.09003 * 109.46965 * 60.00120 * 1 2 3 32 32 H 1.07993 * 120.09491 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.88271 * 61.60669 * 9 8 6 34 34 H 1.08998 * 109.88469 * 300.60104 * 9 8 6 35 35 H 0.96995 * 120.00225 * 266.46422 * 12 10 9 36 36 H 0.96997 * 120.00258 * 180.02562 * 16 15 13 37 37 H 1.09005 * 111.00437 * 82.57594 * 21 10 9 38 38 H 1.08996 * 111.00611 * 206.38213 * 21 10 9 39 39 H 1.08993 * 109.47440 * 175.42741 * 24 22 8 40 40 H 1.09002 * 109.46677 * 295.43323 * 24 22 8 41 41 H 1.08997 * 109.47082 * 55.42399 * 24 22 8 42 42 H 1.07996 * 120.01245 * 180.24609 * 25 5 4 43 43 H 1.08006 * 119.90715 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 0.0062 5 6 1.9305 3.6133 -0.0004 6 6 1.1317 4.8561 -0.0010 7 8 -0.0756 4.8028 0.1309 8 7 1.7416 6.0491 -0.1477 9 6 3.1945 6.2683 -0.1977 10 6 3.4274 7.7865 -0.3465 11 1 3.5748 8.0533 -1.3930 12 7 4.5677 8.2181 0.4657 13 6 5.8366 8.1499 -0.0447 14 1 5.9966 7.7783 -1.0460 15 6 6.9171 8.5583 0.7250 16 7 6.7221 9.0107 1.9455 17 14 8.6480 8.4660 0.0285 18 1 8.7367 9.3093 -1.1905 19 1 9.6161 8.9566 1.0421 20 1 8.9671 7.0580 -0.3192 21 6 2.1066 8.3953 0.1942 22 6 1.0647 7.3548 -0.2870 23 1 0.7999 7.5370 -1.3286 24 6 -0.1843 7.4047 0.5954 25 6 3.3254 3.6774 -0.0009 26 6 4.0686 2.5159 -0.0005 27 6 3.4353 1.2839 -0.0002 28 9 4.1689 0.1495 -0.0004 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2143 2.3164 0.0115 33 1 3.6195 5.7425 -1.0527 34 1 3.6552 5.9111 0.7233 35 1 4.4239 8.5520 1.3649 36 1 7.4771 9.2965 2.4833 37 1 2.1221 8.4583 1.2823 38 1 1.9169 9.3729 -0.2489 39 1 -0.6260 8.3998 0.5441 40 1 -0.9067 6.6678 0.2444 41 1 0.0902 7.1817 1.6264 42 1 3.8221 4.6364 -0.0020 43 1 5.1474 2.5669 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989470734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = -46.907450 kcal Electronic energy + Delta-G solvation = -27443.151432 eV Core-core repulsion = 23404.855384 eV Total energy + Delta-G solvation = -4038.296047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.92658 -40.73435 -39.67266 -37.66312 -37.12852 -34.27275 -32.42559 -31.49797 -30.85886 -29.95271 -28.52597 -27.55989 -25.89244 -24.32487 -23.53328 -22.62586 -21.62822 -20.46207 -19.66066 -18.06153 -17.66190 -17.32710 -16.94920 -16.40212 -16.24940 -15.86293 -15.26706 -15.21367 -14.65842 -14.54516 -14.41884 -14.22263 -13.77565 -13.72579 -13.45957 -12.95157 -12.82152 -12.73075 -12.46037 -12.20715 -11.99942 -11.91557 -11.73820 -11.51072 -11.32389 -11.23378 -10.97076 -10.75110 -10.48934 -10.40649 -10.13725 -9.82689 -9.60403 -9.12639 -9.04891 -8.45212 -8.39347 -7.18439 -5.92421 -3.24460 0.57543 1.09326 2.74913 2.86905 3.06099 3.35320 3.40710 3.41740 3.64776 4.02387 4.37970 4.48772 4.57659 4.76568 4.91949 4.92193 4.99023 5.03469 5.06616 5.15906 5.23535 5.35235 5.39791 5.48134 5.52858 5.69179 5.73692 5.75497 5.78760 5.94456 6.01441 6.06802 6.08444 6.12869 6.32482 6.35720 6.39104 6.43475 6.61056 6.74824 7.02134 7.55135 7.66596 8.23077 8.25588 9.36842 9.89473 10.24185 11.29111 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.003965 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.266353 B = 7059.261284 C = 9229.079329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.080 3.920 4 C -0.127 4.127 5 C -0.102 4.102 6 C 0.573 3.427 7 O -0.546 6.546 8 N -0.600 5.600 9 C 0.058 3.942 10 C 0.171 3.829 11 H 0.068 0.932 12 N -0.712 5.712 13 C -0.255 4.255 14 H 0.073 0.927 15 C -0.005 4.005 16 N -0.928 5.928 17 Si 0.908 3.092 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.284 1.284 21 C -0.137 4.137 22 C 0.137 3.863 23 H 0.076 0.924 24 C -0.159 4.159 25 C -0.127 4.127 26 C -0.122 4.122 27 C 0.090 3.910 28 F -0.131 7.131 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.184 0.816 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.224 -11.577 -4.535 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.034 3.966 4 C -0.146 4.146 5 C -0.105 4.105 6 C 0.363 3.637 7 O -0.426 6.426 8 N -0.333 5.333 9 C -0.068 4.068 10 C 0.058 3.942 11 H 0.086 0.914 12 N -0.352 5.352 13 C -0.386 4.386 14 H 0.091 0.909 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.738 3.262 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.176 4.176 22 C 0.034 3.966 23 H 0.094 0.906 24 C -0.217 4.217 25 C -0.144 4.144 26 C -0.140 4.140 27 C 0.070 3.930 28 F -0.109 7.109 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.200 0.800 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.593 -11.882 -4.529 17.896 hybrid contribution 1.002 -0.176 0.010 1.017 sum -11.591 -12.059 -4.520 17.326 Atomic orbital electron populations 1.23138 0.77778 1.04191 1.01896 1.86127 1.21839 1.25402 1.89048 1.18797 0.90688 0.85571 1.01531 1.21163 1.00930 0.89941 1.02581 1.19771 0.93734 0.93074 1.03924 1.17759 0.86769 0.82272 0.76892 1.90690 1.14013 1.86642 1.51209 1.48537 1.08529 1.05781 1.70471 1.23833 0.78884 1.02404 1.01648 1.21231 0.87511 0.89213 0.96217 0.91386 1.42384 1.01249 1.75555 1.16040 1.19197 0.83419 1.37347 0.98607 0.90887 1.24777 0.98134 1.01109 0.96193 1.69646 1.30619 1.48190 1.08975 0.86272 0.84208 0.77838 0.77868 1.21100 1.21632 1.21033 1.23159 0.94612 0.97724 1.02081 1.21978 0.93313 0.81822 0.99454 0.90650 1.22134 0.97578 1.02099 0.99843 1.22965 0.93153 1.01543 0.96758 1.21127 1.01693 0.89706 1.01510 1.17300 0.85956 0.83072 1.06672 1.91503 1.76621 1.48860 1.93926 0.87921 0.92207 0.92287 0.83359 0.91075 0.89570 0.77754 0.93180 0.90353 0.89943 0.92309 0.90139 0.92644 0.80005 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.81 10.36 -19.62 -0.20 -4.01 16 3 C 0.08 1.06 6.69 -39.24 -0.26 0.80 16 4 C -0.13 -1.66 8.58 -39.04 -0.33 -2.00 16 5 C -0.10 -1.45 5.87 -104.98 -0.62 -2.07 16 6 C 0.57 8.99 7.65 -12.37 -0.09 8.90 16 7 O -0.55 -9.42 13.99 5.31 0.07 -9.34 16 8 N -0.60 -8.96 3.25 -168.47 -0.55 -9.51 16 9 C 0.06 0.89 4.61 -3.07 -0.01 0.87 16 10 C 0.17 2.91 3.59 -66.10 -0.24 2.67 16 11 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 12 N -0.71 -15.74 5.18 -51.65 -0.27 -16.01 16 13 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 15 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 16 N -0.93 -26.15 13.06 55.49 0.72 -25.42 16 17 Si 0.91 20.87 29.55 -169.99 -5.02 15.85 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.14 -1.99 6.11 -24.58 -0.15 -2.14 16 22 C 0.14 1.88 3.80 -66.24 -0.25 1.63 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 C -0.16 -2.11 8.52 37.16 0.32 -1.80 16 25 C -0.13 -1.71 8.60 -39.18 -0.34 -2.05 16 26 C -0.12 -1.55 10.00 -39.60 -0.40 -1.95 16 27 C 0.09 1.23 7.31 -39.16 -0.29 0.94 16 28 F -0.13 -1.85 17.10 2.25 0.04 -1.81 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 31 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 32 H 0.15 1.79 5.89 -52.49 -0.31 1.48 16 33 H 0.07 1.02 6.74 -51.93 -0.35 0.67 16 34 H 0.09 1.44 6.61 -51.93 -0.34 1.10 16 35 H 0.39 9.29 7.71 -40.82 -0.31 8.97 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.18 6.12 -51.93 -0.32 0.86 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.18 2.51 2.73 -58.38 -0.16 2.35 16 43 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -29.46 352.50 -7.32 -36.78 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.51 Total: 9.89 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.92 Total: -1.72 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.09 Total: -50.94 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.13 Total: -13.36 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.46 -7.32 -36.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989470734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.129 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds