Wall clock time and date at job start Tue Mar 31 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35959 * 117.00459 * 2 1 4 4 C 1.38671 * 119.98818 * 0.02562 * 3 2 1 5 5 C 1.38369 * 120.27804 * 179.74304 * 4 3 2 6 6 C 1.37883 * 120.27707 * 0.23490 * 5 4 3 7 7 C 1.39676 * 119.98044 * 0.02562 * 6 5 4 8 8 C 1.47706 * 120.14547 * 180.02562 * 7 6 5 9 9 O 1.21567 * 119.99758 * 132.53413 * 8 7 6 10 10 N 1.34770 * 120.00029 * 312.53924 * 8 7 6 11 11 C 1.47024 * 125.64885 * 5.22366 * 10 8 7 12 12 C 1.54326 * 107.27437 * 181.02632 * 11 10 8 13 13 H 1.09005 * 110.72047 * 263.83763 * 12 11 10 14 14 N 1.46497 * 110.72266 * 140.55839 * 12 11 10 15 15 C 1.36937 * 119.99668 * 86.45642 * 14 12 11 16 16 H 1.07993 * 120.00199 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99451 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99786 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47163 * 89.99985 * 19 17 15 21 21 H 1.48500 * 109.47093 * 210.00372 * 19 17 15 22 22 H 1.48504 * 109.46984 * 330.00117 * 19 17 15 23 23 C 1.55163 * 102.93721 * 22.19614 * 12 11 10 24 24 C 1.47426 * 125.64796 * 184.92593 * 10 8 7 25 25 H 1.08999 * 110.36597 * 274.73785 * 24 10 8 26 26 C 1.52997 * 110.37050 * 37.06531 * 24 10 8 27 27 C 1.38765 * 119.99701 * 180.25267 * 3 2 1 28 28 F 1.35102 * 120.13572 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47512 * 300.00139 * 1 2 3 30 30 H 1.09006 * 109.46935 * 59.99898 * 1 2 3 31 31 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.85838 * 0.02562 * 4 3 2 33 33 H 1.08008 * 119.85958 * 180.25415 * 5 4 3 34 34 H 1.08002 * 120.01286 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.88629 * 300.44777 * 11 10 8 36 36 H 1.09003 * 109.87850 * 61.45988 * 11 10 8 37 37 H 0.96996 * 120.00112 * 266.45900 * 14 12 11 38 38 H 0.96998 * 120.00117 * 179.97438 * 18 17 15 39 39 H 1.08994 * 111.00467 * 82.57393 * 23 12 11 40 40 H 1.09004 * 110.99724 * 206.42396 * 23 12 11 41 41 H 1.09002 * 109.47298 * 58.54426 * 26 24 10 42 42 H 1.08996 * 109.47406 * 178.55119 * 26 24 10 43 43 H 1.09007 * 109.46837 * 298.54935 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2909 2.3742 0.0005 5 6 1.9130 3.6102 0.0059 6 6 3.2891 3.6959 0.0059 7 6 4.0609 2.5318 -0.0001 8 6 5.5354 2.6193 0.0004 9 8 6.1843 1.9408 0.7727 10 7 6.1613 3.4514 -0.8552 11 6 5.5022 4.4028 -1.7619 12 6 6.6117 5.1164 -2.5628 13 1 6.8668 6.0708 -2.1020 14 7 6.2048 5.3048 -3.9574 15 6 5.4779 6.4088 -4.3154 16 1 5.2043 7.1402 -3.5696 17 6 5.0929 6.5875 -5.6371 18 7 5.4260 5.6957 -6.5459 19 14 4.1007 8.0930 -6.1254 20 1 5.0239 9.1923 -6.5056 21 1 3.2281 7.7579 -7.2793 22 1 3.2613 8.5257 -4.9793 23 6 7.8016 4.1252 -2.4671 24 6 7.6206 3.5628 -1.0327 25 1 8.0408 4.2494 -0.2978 26 6 8.2781 2.1864 -0.9142 27 6 3.4321 1.2838 -0.0053 28 9 4.1704 0.1524 -0.0110 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2126 2.3149 0.0014 33 1 1.3180 4.5117 0.0104 34 1 3.7702 4.6629 0.0105 35 1 4.8394 3.8681 -2.4422 36 1 4.9320 5.1306 -1.1846 37 1 6.4503 4.6476 -4.6272 38 1 5.1567 5.8204 -7.4694 39 1 7.7136 3.3360 -3.2137 40 1 8.7536 4.6473 -2.5630 41 1 7.8578 1.5171 -1.6649 42 1 9.3522 2.2819 -1.0731 43 1 8.0926 1.7795 0.0799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989587562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:10 Heat of formation + Delta-G solvation = -64.249867 kcal Electronic energy + Delta-G solvation = -27683.886345 eV Core-core repulsion = 23644.838274 eV Total energy + Delta-G solvation = -4039.048071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.77350 -40.47704 -39.76093 -37.70050 -37.01414 -34.21236 -32.24637 -31.43294 -30.72319 -30.09521 -28.44195 -27.62504 -25.47069 -24.39177 -23.59289 -22.68996 -21.56618 -20.31027 -19.49030 -18.03904 -17.46572 -17.23850 -17.03106 -16.42542 -16.15668 -16.02759 -15.30748 -15.07611 -14.92007 -14.71653 -14.54931 -13.88784 -13.71180 -13.48829 -13.25738 -12.92587 -12.86663 -12.55971 -12.50894 -12.16324 -11.93442 -11.75878 -11.73603 -11.56428 -11.42557 -11.21941 -11.01601 -10.78541 -10.68331 -10.35376 -10.07743 -9.79212 -9.60115 -9.10221 -9.01603 -8.39971 -8.35690 -7.13723 -5.88606 -3.19877 0.67074 1.06502 2.60908 2.87335 3.21158 3.36059 3.41231 3.43301 3.49952 4.04334 4.37282 4.49500 4.55370 4.73193 4.81679 4.86253 4.97031 5.04655 5.07595 5.18221 5.21459 5.27058 5.46078 5.54281 5.60744 5.70364 5.81338 5.82960 5.86321 5.94497 6.08637 6.11207 6.12144 6.21425 6.31216 6.39580 6.45889 6.48931 6.68510 6.83945 7.02436 7.58656 7.72261 8.26520 8.29352 9.40593 9.94436 10.29246 11.33321 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.004209 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.909491 B = 6651.385450 C = 8452.552965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.087 3.913 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.094 4.094 7 C -0.118 4.118 8 C 0.575 3.425 9 O -0.532 6.532 10 N -0.600 5.600 11 C 0.069 3.931 12 C 0.172 3.828 13 H 0.067 0.933 14 N -0.713 5.713 15 C -0.250 4.250 16 H 0.073 0.927 17 C -0.007 4.007 18 N -0.928 5.928 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.136 4.136 24 C 0.138 3.862 25 H 0.076 0.924 26 C -0.165 4.165 27 C 0.117 3.883 28 F -0.118 7.118 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 -6.494 13.933 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.041 3.959 4 C -0.184 4.184 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.122 4.122 8 C 0.363 3.637 9 O -0.410 6.410 10 N -0.334 5.334 11 C -0.056 4.056 12 C 0.060 3.940 13 H 0.085 0.915 14 N -0.353 5.353 15 C -0.381 4.381 16 H 0.091 0.909 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.175 4.175 24 C 0.035 3.965 25 H 0.094 0.906 26 C -0.223 4.223 27 C 0.096 3.904 28 F -0.096 7.096 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.222 0.778 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.690 -6.970 14.318 17.273 hybrid contribution -0.854 0.584 -0.702 1.250 sum -7.545 -6.386 13.616 16.826 Atomic orbital electron populations 1.23131 0.77845 1.04329 1.01559 1.86146 1.21746 1.25498 1.88875 1.18788 0.90321 0.85918 1.00881 1.21272 1.00421 0.91427 1.05283 1.20954 0.94264 0.97448 0.98329 1.21286 0.93681 0.97543 0.98736 1.19812 0.94460 0.92262 1.05687 1.17537 0.86107 0.79597 0.80458 1.90739 1.66358 1.44426 1.39451 1.48517 1.07930 1.38264 1.38652 1.23529 0.98796 0.91234 0.92077 1.21181 0.90173 0.95369 0.87288 0.91541 1.42381 1.64258 1.26468 1.02161 1.19236 1.26572 0.99279 0.93013 0.90922 1.24767 1.01136 0.98505 0.95963 1.69657 1.50529 1.35614 1.01756 0.86201 0.79659 0.82409 0.77936 1.21580 1.21733 1.20644 1.23192 0.99889 0.99677 0.94724 1.21943 0.79657 0.97615 0.97268 0.90623 1.22152 0.99831 0.96063 1.04248 1.16778 0.85813 0.82106 1.05711 1.91546 1.76358 1.48182 1.93561 0.92418 0.92249 0.87914 0.84169 0.84256 0.83829 0.90620 0.91990 0.77806 0.93301 0.90378 0.89992 0.92677 0.92032 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.86 10.36 -19.61 -0.20 -4.06 16 3 C 0.09 1.16 6.69 -39.23 -0.26 0.90 16 4 C -0.17 -1.74 9.03 -39.37 -0.36 -2.09 16 5 C -0.09 -0.97 10.02 -39.66 -0.40 -1.37 16 6 C -0.09 -1.20 8.52 -39.17 -0.33 -1.54 16 7 C -0.12 -1.85 5.42 -104.93 -0.57 -2.42 16 8 C 0.58 10.01 6.92 -12.40 -0.09 9.92 16 9 O -0.53 -10.42 14.38 5.31 0.08 -10.34 16 10 N -0.60 -9.78 3.24 -164.07 -0.53 -10.31 16 11 C 0.07 1.16 5.39 -3.06 -0.02 1.14 16 12 C 0.17 3.12 3.59 -66.09 -0.24 2.88 16 13 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 14 N -0.71 -16.49 5.18 -51.65 -0.27 -16.76 16 15 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 18 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 19 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.14 -2.12 6.12 -24.46 -0.15 -2.27 16 24 C 0.14 2.06 3.75 -66.30 -0.25 1.81 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.17 -2.41 8.77 37.16 0.33 -2.09 16 27 C 0.12 1.87 7.26 -38.82 -0.28 1.59 16 28 F -0.12 -2.13 16.31 2.25 0.04 -2.10 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.14 1.02 6.27 -52.49 -0.33 0.69 16 33 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.14 1.69 5.92 -52.49 -0.31 1.38 16 35 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 36 H 0.06 0.94 5.98 -51.93 -0.31 0.63 16 37 H 0.39 9.70 7.71 -40.82 -0.31 9.38 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.34 5.93 -51.92 -0.31 1.04 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -31.87 356.28 -7.39 -39.26 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.70 Total: 8.04 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.87 Total: 0.79 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.07 Total: -53.11 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.13 Total: -14.41 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.87 -7.39 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989587562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.989 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds