Wall clock time and date at job start Tue Mar 31 2020 14:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.99851 * 2 1 4 4 C 1.54334 * 109.77811 * 121.16274 * 2 1 3 5 5 C 1.55157 * 103.01983 * 97.49543 * 4 2 1 6 6 H 1.09000 * 111.00793 * 277.22765 * 5 4 2 7 7 N 1.46504 * 111.03456 * 153.39313 * 5 4 2 8 8 C 1.36937 * 119.99730 * 161.33101 * 7 5 4 9 9 H 1.07998 * 120.00195 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99996 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99764 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 119.99916 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46863 * 90.00484 * 12 10 8 14 14 H 1.48504 * 109.47480 * 209.99996 * 12 10 8 15 15 H 1.48500 * 109.47299 * 330.00484 * 12 10 8 16 16 C 1.54906 * 101.58198 * 35.31048 * 5 4 2 17 17 N 1.47025 * 109.88239 * 238.90049 * 2 1 3 18 18 C 1.34777 * 125.64491 * 59.56111 * 17 2 1 19 19 O 1.21282 * 120.00085 * 359.71916 * 18 17 2 20 20 C 1.50703 * 119.99648 * 179.71309 * 18 17 2 21 21 O 1.42898 * 109.46862 * 180.02562 * 20 18 17 22 22 C 1.35948 * 116.99859 * 180.02562 * 21 20 18 23 23 C 1.38715 * 120.03007 * 179.97438 * 22 21 20 24 24 C 1.38143 * 119.97014 * 179.97438 * 23 22 21 25 25 C 1.38457 * 120.02999 * 359.97438 * 24 23 22 26 26 F 1.35100 * 119.96773 * 180.02562 * 25 24 23 27 27 C 1.38457 * 120.05945 * 0.04290 * 25 24 23 28 28 C 1.38143 * 120.03146 * 359.95577 * 27 25 24 29 29 H 1.09001 * 109.47354 * 179.64267 * 1 2 3 30 30 H 1.09005 * 109.47308 * 299.64302 * 1 2 3 31 31 H 1.08998 * 109.47148 * 59.64082 * 1 2 3 32 32 H 1.09001 * 110.85366 * 339.02581 * 4 2 1 33 33 H 1.08997 * 110.66838 * 215.87540 * 4 2 1 34 34 H 0.97002 * 120.00477 * 341.33623 * 7 5 4 35 35 H 0.97006 * 119.99788 * 179.97438 * 11 10 8 36 36 H 1.09008 * 110.36767 * 204.15231 * 16 5 4 37 37 H 1.08999 * 110.46397 * 81.87169 * 16 5 4 38 38 H 1.08996 * 109.46835 * 60.00366 * 20 18 17 39 39 H 1.08994 * 109.47441 * 299.99955 * 20 18 17 40 40 H 1.07996 * 120.01068 * 359.70602 * 23 22 21 41 41 H 1.08001 * 119.98819 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.98037 * 179.97438 * 27 25 24 43 43 H 1.08004 * 120.01858 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 6 2.3560 -2.1697 0.6915 6 1 1.4521 -2.7779 0.6580 7 7 3.3996 -2.8283 1.4811 8 6 3.5500 -4.1880 1.4186 9 1 2.8995 -4.7747 0.7870 10 6 4.5384 -4.8121 2.1672 11 7 4.6832 -6.1189 2.1067 12 14 5.6639 -3.7972 3.2592 13 1 5.0636 -3.6761 4.6120 14 1 6.9867 -4.4642 3.3626 15 1 5.8363 -2.4445 2.6711 16 6 2.8613 -1.8466 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.7753 -0.3846 -2.4657 19 8 1.0746 0.5727 -2.7180 20 6 2.3613 -1.2055 -3.5854 21 8 1.9506 -0.6605 -4.8409 22 6 2.3954 -1.2886 -5.9615 23 6 2.0345 -0.8129 -7.2136 24 6 2.4877 -1.4518 -8.3515 25 6 3.3021 -2.5662 -8.2427 26 9 3.7450 -3.1897 -9.3563 27 6 3.6628 -3.0423 -6.9935 28 6 3.2111 -2.4053 -5.8540 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 1.2885 -0.7950 2.0192 33 1 2.9600 -0.2828 1.6225 34 1 3.9841 -2.3013 2.0483 35 1 5.3742 -6.5551 2.6295 36 1 2.7177 -2.7049 -1.3932 37 1 3.9125 -1.5595 -0.7132 38 1 2.0108 -2.2343 -3.5034 39 1 3.4491 -1.1858 -3.5196 40 1 1.3960 0.0540 -7.2987 41 1 2.2065 -1.0819 -9.3265 42 1 4.2978 -3.9118 -6.9101 43 1 3.4929 -2.7766 -4.8797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989780040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:01 Heat of formation + Delta-G solvation = -68.025643 kcal Electronic energy + Delta-G solvation = -26540.877155 eV Core-core repulsion = 22501.665354 eV Total energy + Delta-G solvation = -4039.211801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.04006 -40.67902 -39.84826 -37.89250 -37.01300 -34.44240 -32.27049 -31.62498 -31.52170 -29.98231 -28.97147 -27.98829 -25.68572 -23.95224 -23.42601 -22.62856 -21.70238 -20.41866 -19.11024 -18.69497 -17.82562 -17.58512 -17.20012 -16.66072 -16.45262 -15.78118 -15.62800 -15.39661 -14.94915 -14.55829 -14.23204 -14.03761 -13.88956 -13.73700 -13.42274 -13.23455 -13.16911 -12.87515 -12.76191 -12.57889 -12.47652 -12.08167 -12.00540 -11.64491 -11.23793 -11.17682 -11.14766 -10.95255 -10.75409 -10.47658 -10.16917 -9.81465 -9.74881 -9.50095 -9.15833 -8.59971 -8.38543 -7.51371 -5.94491 -3.33577 0.84873 0.92696 2.32768 2.53417 3.24955 3.27625 3.28043 3.34215 3.39813 4.04216 4.25721 4.42621 4.43680 4.48011 4.71969 4.81817 4.84012 4.88614 4.90212 5.02730 5.04715 5.18704 5.25631 5.40830 5.42912 5.57220 5.63381 5.66329 5.76329 5.83103 5.84259 5.87403 5.92316 5.98296 6.06859 6.20760 6.30499 6.36649 6.44309 6.60738 7.01393 7.51692 7.78484 8.11210 8.23825 8.99955 9.72114 9.89554 11.22837 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003023 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.271417 B = 9259.997683 C =11299.609961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.073 0.927 4 C -0.141 4.141 5 C 0.180 3.820 6 H 0.075 0.925 7 N -0.736 5.736 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.884 3.116 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.067 3.933 17 N -0.607 5.607 18 C 0.532 3.468 19 O -0.527 6.527 20 C 0.043 3.957 21 O -0.287 6.287 22 C 0.124 3.876 23 C -0.122 4.122 24 C -0.113 4.113 25 C 0.055 3.945 26 F -0.142 7.142 27 C -0.109 4.109 28 C -0.181 4.181 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.365 0.635 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 10.795 -14.347 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.068 3.932 6 H 0.093 0.907 7 N -0.378 5.378 8 C -0.387 4.387 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.573 5.573 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.058 4.058 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.403 6.403 20 C -0.036 4.036 21 O -0.199 6.199 22 C 0.078 3.922 23 C -0.140 4.140 24 C -0.132 4.132 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.128 4.128 28 C -0.200 4.200 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.974 11.191 -14.603 19.059 hybrid contribution 1.306 0.117 0.695 1.484 sum -3.668 11.308 -13.908 18.296 Atomic orbital electron populations 1.22157 0.94691 1.02570 1.02702 1.21506 0.94674 0.95877 0.83985 0.90888 1.23037 1.01912 0.96784 0.96186 1.21225 0.92562 0.91212 0.88188 0.90743 1.42675 1.37722 1.05347 1.52034 1.19042 1.14788 0.81160 1.23687 0.88984 1.24691 0.98849 0.95369 0.99627 1.69696 1.35730 1.07491 1.44405 0.86576 0.81035 0.79664 0.81342 1.20881 1.21589 1.20238 1.23552 0.94962 0.87174 1.00124 1.48493 1.50475 1.31268 1.04068 1.19493 0.81391 0.84968 0.82233 1.90709 1.38016 1.28483 1.83116 1.22530 1.00882 0.98176 0.81962 1.86152 1.69459 1.52640 1.11660 1.19087 0.94165 0.91969 0.86988 1.20285 1.03048 1.02140 0.88556 1.20948 0.97833 0.94865 0.99568 1.17595 1.00929 0.95212 0.82645 1.91491 1.88058 1.81769 1.50799 1.20980 1.00534 1.00804 0.90478 1.21229 1.01625 0.97242 0.99922 0.92205 0.91747 0.91307 0.89627 0.90656 0.80149 0.92795 0.90792 0.90898 0.88565 0.88723 0.83950 0.84034 0.84203 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.05 37.16 0.34 -1.66 16 2 C 0.14 1.85 3.51 -66.95 -0.23 1.61 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.85 6.11 -24.89 -0.15 -2.00 16 5 C 0.18 2.92 3.69 -65.78 -0.24 2.68 16 6 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 7 N -0.74 -15.18 5.08 -51.35 -0.26 -15.44 16 8 C -0.26 -6.52 10.47 -15.06 -0.16 -6.68 16 9 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 11 N -0.93 -27.27 13.97 55.49 0.78 -26.49 16 12 Si 0.88 20.40 27.73 -169.99 -4.71 15.69 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 16 C 0.07 0.97 6.38 -2.53 -0.02 0.95 16 17 N -0.61 -8.33 3.08 -163.01 -0.50 -8.84 16 18 C 0.53 7.70 7.71 -10.98 -0.08 7.62 16 19 O -0.53 -9.26 15.39 -14.35 -0.22 -9.49 16 20 C 0.04 0.50 4.23 36.01 0.15 0.65 16 21 O -0.29 -3.74 9.67 -39.49 -0.38 -4.12 16 22 C 0.12 1.39 6.69 -39.23 -0.26 1.12 16 23 C -0.12 -1.20 9.98 -39.44 -0.39 -1.59 16 24 C -0.11 -1.02 10.02 -39.54 -0.40 -1.42 16 25 C 0.06 0.56 7.30 -39.42 -0.29 0.28 16 26 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 27 C -0.11 -1.06 10.02 -39.54 -0.40 -1.45 16 28 C -0.18 -1.81 9.04 -39.44 -0.36 -2.17 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.95 6.74 -51.93 -0.35 0.60 16 32 H 0.09 1.03 7.83 -51.93 -0.41 0.63 16 33 H 0.07 0.97 7.99 -51.93 -0.42 0.56 16 34 H 0.36 7.43 5.57 -40.82 -0.23 7.20 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.02 7.48 -51.92 -0.39 0.63 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.97 7.37 -51.93 -0.38 0.58 16 39 H 0.09 0.93 7.66 -51.93 -0.40 0.54 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.14 1.21 6.30 -52.48 -0.33 0.88 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -31.15 360.78 -8.29 -39.43 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.87 Total: 7.16 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.59 Total: -1.84 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.01 Total: -50.77 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.60 Total: -13.60 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.71 Total: 15.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.15 -8.29 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989780040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.591 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds