Wall clock time and date at job start Tue Mar 31 2020 14:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.99851 * 2 1 4 4 C 1.54334 * 109.77811 * 121.16274 * 2 1 3 5 5 C 1.55157 * 103.01983 * 97.49543 * 4 2 1 6 6 H 1.09000 * 111.00793 * 277.22765 * 5 4 2 7 7 N 1.46504 * 111.03456 * 153.39313 * 5 4 2 8 8 C 1.36937 * 119.99730 * 161.33101 * 7 5 4 9 9 H 1.07998 * 120.00195 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99996 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99764 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 119.99916 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46863 * 90.00484 * 12 10 8 14 14 H 1.48504 * 109.47480 * 209.99996 * 12 10 8 15 15 H 1.48500 * 109.47299 * 330.00484 * 12 10 8 16 16 C 1.54906 * 101.58198 * 35.31048 * 5 4 2 17 17 N 1.47025 * 109.88239 * 238.90049 * 2 1 3 18 18 C 1.34777 * 125.64491 * 59.56111 * 17 2 1 19 19 O 1.21282 * 120.00085 * 359.71916 * 18 17 2 20 20 C 1.50703 * 119.99648 * 179.71309 * 18 17 2 21 21 O 1.42898 * 109.46862 * 180.02562 * 20 18 17 22 22 C 1.35948 * 116.99859 * 180.02562 * 21 20 18 23 23 C 1.38715 * 120.03007 * 179.97438 * 22 21 20 24 24 C 1.38143 * 119.97014 * 179.97438 * 23 22 21 25 25 C 1.38457 * 120.02999 * 359.97438 * 24 23 22 26 26 F 1.35100 * 119.96773 * 180.02562 * 25 24 23 27 27 C 1.38457 * 120.05945 * 0.04290 * 25 24 23 28 28 C 1.38143 * 120.03146 * 359.95577 * 27 25 24 29 29 H 1.09001 * 109.47354 * 179.64267 * 1 2 3 30 30 H 1.09005 * 109.47308 * 299.64302 * 1 2 3 31 31 H 1.08998 * 109.47148 * 59.64082 * 1 2 3 32 32 H 1.09001 * 110.85366 * 339.02581 * 4 2 1 33 33 H 1.08997 * 110.66838 * 215.87540 * 4 2 1 34 34 H 0.97002 * 120.00477 * 341.33623 * 7 5 4 35 35 H 0.97006 * 119.99788 * 179.97438 * 11 10 8 36 36 H 1.09008 * 110.36767 * 204.15231 * 16 5 4 37 37 H 1.08999 * 110.46397 * 81.87169 * 16 5 4 38 38 H 1.08996 * 109.46835 * 60.00366 * 20 18 17 39 39 H 1.08994 * 109.47441 * 299.99955 * 20 18 17 40 40 H 1.07996 * 120.01068 * 359.70602 * 23 22 21 41 41 H 1.08001 * 119.98819 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.98037 * 179.97438 * 27 25 24 43 43 H 1.08004 * 120.01858 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 6 2.3560 -2.1697 0.6915 6 1 1.4521 -2.7779 0.6580 7 7 3.3996 -2.8283 1.4811 8 6 3.5500 -4.1880 1.4186 9 1 2.8995 -4.7747 0.7870 10 6 4.5384 -4.8121 2.1672 11 7 4.6832 -6.1189 2.1067 12 14 5.6639 -3.7972 3.2592 13 1 5.0636 -3.6761 4.6120 14 1 6.9867 -4.4642 3.3626 15 1 5.8363 -2.4445 2.6711 16 6 2.8613 -1.8466 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.7753 -0.3846 -2.4657 19 8 1.0746 0.5727 -2.7180 20 6 2.3613 -1.2055 -3.5854 21 8 1.9506 -0.6605 -4.8409 22 6 2.3954 -1.2886 -5.9615 23 6 2.0345 -0.8129 -7.2136 24 6 2.4877 -1.4518 -8.3515 25 6 3.3021 -2.5662 -8.2427 26 9 3.7450 -3.1897 -9.3563 27 6 3.6628 -3.0423 -6.9935 28 6 3.2111 -2.4053 -5.8540 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 1.2885 -0.7950 2.0192 33 1 2.9600 -0.2828 1.6225 34 1 3.9841 -2.3013 2.0483 35 1 5.3742 -6.5551 2.6295 36 1 2.7177 -2.7049 -1.3932 37 1 3.9125 -1.5595 -0.7132 38 1 2.0108 -2.2343 -3.5034 39 1 3.4491 -1.1858 -3.5196 40 1 1.3960 0.0540 -7.2987 41 1 2.2065 -1.0819 -9.3265 42 1 4.2978 -3.9118 -6.9101 43 1 3.4929 -2.7766 -4.8797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989780040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:00 Heat of formation + Delta-G solvation = -85.880557 kcal Electronic energy + Delta-G solvation = -26541.651402 eV Core-core repulsion = 22501.665354 eV Total energy + Delta-G solvation = -4039.986048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.84498 -41.66254 -40.84037 -38.98354 -37.99785 -36.08286 -33.58528 -33.18100 -32.29571 -30.81241 -30.41680 -28.92727 -26.78245 -25.56660 -24.32670 -23.54444 -22.81669 -21.71936 -20.24312 -19.72791 -19.42253 -18.42134 -18.20881 -17.63650 -17.44392 -16.93212 -16.58566 -16.52032 -16.06037 -15.71532 -15.42977 -15.36864 -14.90755 -14.68917 -14.61908 -14.48200 -14.18098 -14.02566 -13.97484 -13.52524 -13.41003 -13.30369 -13.17441 -13.07417 -12.84192 -12.34670 -12.04184 -12.02462 -11.96960 -11.88572 -11.78999 -11.47543 -11.08436 -10.85782 -10.22844 -9.78298 -9.33409 -9.19532 -7.99424 -5.35136 0.11694 0.14351 1.35673 1.42001 1.43448 1.46093 1.53438 2.40205 2.51724 2.51909 3.18399 3.30085 3.30665 3.58730 3.71162 3.74534 3.78512 3.85182 3.94269 3.98217 4.08255 4.13668 4.28229 4.34240 4.41246 4.46242 4.52258 4.68907 4.75703 4.87562 4.89732 5.01256 5.08650 5.10120 5.11508 5.16841 5.23699 5.29662 5.43649 5.63423 5.80437 6.18560 6.23650 6.39346 6.98983 7.09799 7.83248 8.01884 9.21172 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003023 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.271417 B = 9259.997683 C =11299.609961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.170 3.830 6 H 0.065 0.935 7 N -0.738 5.738 8 C -0.231 4.231 9 H 0.063 0.937 10 C -0.059 4.059 11 N -0.981 5.981 12 Si 0.949 3.051 13 H -0.281 1.281 14 H -0.302 1.302 15 H -0.245 1.245 16 C 0.078 3.922 17 N -0.604 5.604 18 C 0.530 3.470 19 O -0.562 6.562 20 C 0.044 3.956 21 O -0.308 6.308 22 C 0.107 3.893 23 C -0.127 4.127 24 C -0.108 4.108 25 C 0.043 3.957 26 F -0.148 7.148 27 C -0.113 4.113 28 C -0.184 4.184 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.370 0.630 35 H 0.257 0.743 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 12.531 -14.386 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.097 0.903 4 C -0.166 4.166 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.380 5.380 8 C -0.362 4.362 9 H 0.081 0.919 10 C -0.250 4.250 11 N -0.631 5.631 12 Si 0.777 3.223 13 H -0.208 1.208 14 H -0.230 1.230 15 H -0.170 1.170 16 C -0.048 4.048 17 N -0.339 5.339 18 C 0.318 3.682 19 O -0.440 6.440 20 C -0.034 4.034 21 O -0.221 6.221 22 C 0.061 3.939 23 C -0.146 4.146 24 C -0.126 4.126 25 C 0.023 3.977 26 F -0.127 7.127 27 C -0.132 4.132 28 C -0.202 4.202 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.711 12.985 -14.663 20.145 hybrid contribution 1.100 -0.413 0.612 1.325 sum -3.611 12.572 -14.051 19.197 Atomic orbital electron populations 1.22100 0.94169 1.02276 1.02930 1.21618 0.95108 0.96095 0.83523 0.90262 1.22972 1.02872 0.94223 0.96485 1.21380 0.91041 0.92597 0.89013 0.91705 1.42598 1.38865 1.03631 1.52940 1.19000 1.12822 0.83100 1.21279 0.91874 1.25455 1.01220 0.96325 1.02045 1.69875 1.37096 1.09673 1.46466 0.85501 0.78068 0.79342 0.79371 1.20782 1.22962 1.16973 1.23287 0.95005 0.87632 0.98830 1.48491 1.50136 1.30918 1.04328 1.19953 0.80770 0.84678 0.82786 1.90694 1.39639 1.30133 1.83582 1.22587 1.01810 0.98108 0.80869 1.86113 1.70175 1.53489 1.12318 1.19316 0.95047 0.92675 0.86838 1.20493 1.03148 1.02531 0.88398 1.21176 0.96898 0.94164 1.00385 1.17825 1.01443 0.95730 0.82675 1.91477 1.88195 1.81939 1.51083 1.21182 1.00551 1.01196 0.90276 1.21365 1.01322 0.96890 1.00634 0.92682 0.89505 0.93119 0.88171 0.89642 0.79602 0.93419 0.90290 0.90579 0.86999 0.86752 0.83001 0.81747 0.82830 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.05 71.98 0.65 -2.90 16 2 C 0.14 3.28 3.51 45.34 0.16 3.44 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.13 -2.96 6.11 31.79 0.19 -2.77 16 5 C 0.17 5.17 3.69 46.38 0.17 5.34 16 6 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 7 N -0.74 -28.95 5.08 -316.37 -1.61 -30.55 16 8 C -0.23 -11.64 10.47 84.03 0.88 -10.76 16 9 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 10 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 11 N -0.98 -58.99 13.97 21.65 0.30 -58.69 16 12 Si 0.95 41.48 27.73 68.60 1.90 43.38 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 15 H -0.25 -9.34 6.52 99.48 0.65 -8.69 16 16 C 0.08 2.07 6.38 86.85 0.55 2.63 16 17 N -0.60 -15.45 3.08 -788.02 -2.43 -17.88 16 18 C 0.53 14.67 7.71 87.66 0.68 15.35 16 19 O -0.56 -19.43 15.39 16.00 0.25 -19.19 16 20 C 0.04 0.96 4.23 71.24 0.30 1.27 16 21 O -0.31 -7.75 9.67 -73.93 -0.71 -8.47 16 22 C 0.11 2.27 6.69 22.50 0.15 2.42 16 23 C -0.13 -2.36 9.98 22.36 0.22 -2.13 16 24 C -0.11 -1.78 10.02 22.30 0.22 -1.55 16 25 C 0.04 0.81 7.30 22.37 0.16 0.97 16 26 F -0.15 -3.04 17.27 44.97 0.78 -2.27 16 27 C -0.11 -2.04 10.02 22.30 0.22 -1.82 16 28 C -0.18 -3.41 9.04 22.36 0.20 -3.21 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.05 1.35 6.74 -2.39 -0.02 1.34 16 32 H 0.10 2.08 7.83 -2.39 -0.02 2.06 16 33 H 0.08 1.87 7.99 -2.39 -0.02 1.86 16 34 H 0.37 13.89 5.57 -92.71 -0.52 13.37 16 35 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 36 H 0.08 2.03 7.48 -2.38 -0.02 2.02 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.11 2.06 7.37 -2.39 -0.02 2.04 16 39 H 0.11 2.02 7.66 -2.39 -0.02 2.00 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 43 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 Total: -1.00 -67.72 360.78 4.18 -63.55 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.46 Total: 26.54 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.24 Total: 3.58 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -3.73 Total: -107.13 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.47 Total: -27.65 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.90 Total: 43.38 kcal Total: -67.72 4.18 -63.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989780040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.334 kcal (2) G-P(sol) polarization free energy of solvation -67.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds