Wall clock time and date at job start Tue Mar 31 2020 14:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.99935 * 2 1 4 4 C 1.54372 * 109.84844 * 238.90432 * 2 1 3 5 5 C 1.55159 * 102.91844 * 262.73092 * 4 2 1 6 6 H 1.09000 * 110.99914 * 82.63777 * 5 4 2 7 7 N 1.46499 * 111.00291 * 206.45231 * 5 4 2 8 8 C 1.36939 * 119.99933 * 202.09658 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31612 * 120.00054 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99751 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47517 * 89.99708 * 12 10 8 14 14 H 1.48502 * 109.46736 * 209.99481 * 12 10 8 15 15 H 1.48496 * 109.47375 * 329.99177 * 12 10 8 16 16 C 1.54912 * 101.61687 * 324.54806 * 5 4 2 17 17 N 1.47022 * 109.88280 * 121.09307 * 2 1 3 18 18 C 1.34774 * 125.64853 * 300.51566 * 17 2 1 19 19 O 1.21283 * 120.00119 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99930 * 179.97438 * 18 17 2 21 21 O 1.42900 * 109.47371 * 179.97438 * 20 18 17 22 22 C 1.35944 * 117.00121 * 180.02562 * 21 20 18 23 23 C 1.38699 * 120.03176 * 359.72614 * 22 21 20 24 24 C 1.38150 * 119.97186 * 179.70102 * 23 22 21 25 25 C 1.38455 * 120.02629 * 0.57287 * 24 23 22 26 26 F 1.35105 * 119.96826 * 179.74726 * 25 24 23 27 27 C 1.38452 * 120.06135 * 359.72260 * 25 24 23 28 28 C 1.38153 * 120.03043 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.47240 * 300.36300 * 1 2 3 30 30 H 1.09005 * 109.46954 * 60.35908 * 1 2 3 31 31 H 1.08994 * 109.46921 * 180.35637 * 1 2 3 32 32 H 1.08989 * 110.70389 * 144.38404 * 4 2 1 33 33 H 1.08998 * 110.75063 * 21.09698 * 4 2 1 34 34 H 0.97001 * 119.99790 * 21.81632 * 7 5 4 35 35 H 0.96998 * 120.00381 * 180.02562 * 11 10 8 36 36 H 1.09001 * 110.36306 * 155.83181 * 16 5 4 37 37 H 1.09002 * 110.36385 * 278.03869 * 16 5 4 38 38 H 1.08993 * 109.47479 * 300.00074 * 20 18 17 39 39 H 1.09001 * 109.46974 * 59.99732 * 20 18 17 40 40 H 1.08002 * 120.01682 * 359.97266 * 23 22 21 41 41 H 1.07999 * 119.98749 * 180.31994 * 24 23 22 42 42 H 1.08003 * 119.98843 * 179.97438 * 27 25 24 43 43 H 1.08003 * 120.01122 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0542 -0.7499 -1.2434 5 6 2.3519 -2.1695 -0.6923 6 1 1.4456 -2.7741 -0.6603 7 7 3.3938 -2.8312 -1.4815 8 6 3.4944 -4.1969 -1.4746 9 1 2.8084 -4.7858 -0.8838 10 6 4.4779 -4.8242 -2.2270 11 7 4.5749 -6.1367 -2.2199 12 14 5.6645 -3.8054 -3.2484 13 1 6.8564 -3.4657 -2.4302 14 1 6.0876 -4.5849 -4.4395 15 1 4.9931 -2.5558 -3.6875 16 6 2.8568 -1.8497 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.7742 -0.3852 2.4657 19 8 1.0769 0.5745 2.7180 20 6 2.3546 -1.2101 3.5854 21 8 1.9437 -0.6652 4.8409 22 6 2.3847 -1.2961 5.9615 23 6 3.1911 -2.4194 5.8539 24 6 3.6436 -3.0559 6.9935 25 6 3.2826 -2.5799 8.2425 26 9 3.7216 -3.2063 9.3562 27 6 2.4726 -1.4623 8.3514 28 6 2.0239 -0.8202 7.2134 29 1 -0.3634 0.5195 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.9646 -0.2834 -1.6194 33 1 1.2908 -0.7901 -2.0204 34 1 4.0098 -2.3022 -2.0122 35 1 5.2623 -6.5751 -2.7453 36 1 2.7088 -2.7080 1.3923 37 1 3.9097 -1.5686 0.7132 38 1 2.0003 -2.2374 3.5014 39 1 3.4427 -1.1947 3.5217 40 1 3.4689 -2.7938 4.8797 41 1 4.2758 -3.9275 6.9100 42 1 2.1914 -1.0923 9.3263 43 1 1.3924 0.0518 7.2987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989780041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:05 Heat of formation + Delta-G solvation = -68.073320 kcal Electronic energy + Delta-G solvation = -26531.733234 eV Core-core repulsion = 22492.519365 eV Total energy + Delta-G solvation = -4039.213868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.04292 -40.68312 -39.85089 -37.89443 -37.01609 -34.44423 -32.26852 -31.62770 -31.52454 -29.98655 -28.97571 -27.99086 -25.68876 -23.94504 -23.42721 -22.63227 -21.70755 -20.42800 -19.10515 -18.69776 -17.84157 -17.58954 -17.20430 -16.66584 -16.45597 -15.78363 -15.62563 -15.39949 -14.95397 -14.56499 -14.22503 -14.03970 -13.89395 -13.73596 -13.41238 -13.23671 -13.16485 -12.88286 -12.76195 -12.58125 -12.48174 -12.07800 -12.00729 -11.64212 -11.23622 -11.18257 -11.14977 -10.95596 -10.76575 -10.47154 -10.16772 -9.82061 -9.75177 -9.50481 -9.16063 -8.60275 -8.39013 -7.51619 -5.94539 -3.33687 0.84401 0.92296 2.32356 2.53066 3.25101 3.27190 3.27649 3.34077 3.39575 4.03795 4.25358 4.42346 4.43422 4.47582 4.71515 4.81445 4.83840 4.88340 4.90781 5.02296 5.05278 5.19217 5.25231 5.39526 5.42777 5.56745 5.63246 5.66760 5.76808 5.82600 5.83861 5.87334 5.91845 5.97935 6.07012 6.21228 6.30963 6.36325 6.44076 6.60020 7.00992 7.51411 7.78444 8.10894 8.23736 8.99824 9.71973 9.89390 11.22800 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.003008 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.687619 B = 9306.733695 C =11321.621000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.073 0.927 4 C -0.141 4.141 5 C 0.180 3.820 6 H 0.076 0.924 7 N -0.736 5.736 8 C -0.258 4.258 9 H 0.092 0.908 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.067 3.933 17 N -0.607 5.607 18 C 0.532 3.468 19 O -0.527 6.527 20 C 0.043 3.957 21 O -0.287 6.287 22 C 0.124 3.876 23 C -0.182 4.182 24 C -0.109 4.109 25 C 0.056 3.944 26 F -0.142 7.142 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.365 0.635 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 10.803 14.681 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.180 4.180 5 C 0.068 3.932 6 H 0.094 0.906 7 N -0.377 5.377 8 C -0.387 4.387 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.573 5.573 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.059 4.059 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.403 6.403 20 C -0.036 4.036 21 O -0.199 6.199 22 C 0.078 3.922 23 C -0.200 4.200 24 C -0.128 4.128 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.132 4.132 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.705 11.198 14.923 19.241 hybrid contribution 1.326 0.118 -0.669 1.490 sum -3.379 11.316 14.254 18.510 Atomic orbital electron populations 1.22155 0.94700 1.02566 1.02697 1.21521 0.94660 0.95894 0.84009 0.90908 1.23069 1.01885 0.96885 0.96142 1.21227 0.92621 0.91221 0.88147 0.90598 1.42674 1.36030 1.04678 1.54319 1.19052 1.14031 0.80651 1.24971 0.88976 1.24688 0.98867 0.95314 0.99651 1.69689 1.36053 1.07052 1.44521 0.86579 0.81787 0.79732 0.80567 1.20922 1.21568 1.20179 1.23545 0.95055 0.87115 1.00158 1.48480 1.50597 1.31128 1.04072 1.19491 0.81338 0.85029 0.82229 1.90711 1.38103 1.28386 1.83110 1.22531 1.00905 0.98149 0.81968 1.86151 1.69621 1.52473 1.11662 1.19082 0.94225 0.91909 0.86990 1.21227 1.01749 0.97133 0.99915 1.20982 1.00497 1.00844 0.90480 1.17594 1.00993 0.95144 0.82647 1.91493 1.88180 1.81642 1.50804 1.20950 0.97873 0.94817 0.99572 1.20288 1.03051 1.02130 0.88558 0.91316 0.91745 0.92209 0.90668 0.89651 0.80154 0.92788 0.90777 0.90907 0.88566 0.88726 0.84083 0.84205 0.84032 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.06 37.16 0.34 -1.67 16 2 C 0.14 1.84 3.50 -66.93 -0.23 1.61 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.87 6.13 -24.87 -0.15 -2.02 16 5 C 0.18 2.92 3.70 -65.78 -0.24 2.67 16 6 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 7 N -0.74 -15.16 5.06 -51.35 -0.26 -15.42 16 8 C -0.26 -6.53 10.45 -15.06 -0.16 -6.69 16 9 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 10 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 11 N -0.93 -27.28 13.97 55.49 0.78 -26.51 16 12 Si 0.88 20.39 27.74 -169.99 -4.71 15.68 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -5.92 6.52 56.52 0.37 -5.55 16 16 C 0.07 0.95 6.39 -2.53 -0.02 0.93 16 17 N -0.61 -8.28 3.08 -162.98 -0.50 -8.79 16 18 C 0.53 7.66 7.71 -10.99 -0.08 7.58 16 19 O -0.53 -9.24 15.39 -14.35 -0.22 -9.46 16 20 C 0.04 0.50 4.23 36.01 0.15 0.65 16 21 O -0.29 -3.72 9.67 -39.47 -0.38 -4.10 16 22 C 0.12 1.38 6.69 -39.24 -0.26 1.12 16 23 C -0.18 -1.80 9.04 -39.44 -0.36 -2.15 16 24 C -0.11 -1.05 10.02 -39.53 -0.40 -1.45 16 25 C 0.06 0.56 7.30 -39.42 -0.29 0.27 16 26 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 27 C -0.11 -1.02 10.02 -39.53 -0.40 -1.41 16 28 C -0.12 -1.19 9.99 -39.44 -0.39 -1.58 16 29 H 0.07 0.95 6.74 -51.93 -0.35 0.60 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.97 8.00 -51.94 -0.42 0.56 16 33 H 0.08 1.05 7.83 -51.93 -0.41 0.65 16 34 H 0.36 7.42 5.60 -40.82 -0.23 7.20 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 0.96 7.35 -51.93 -0.38 0.57 16 39 H 0.09 0.92 7.67 -51.93 -0.40 0.52 16 40 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -31.16 360.80 -8.29 -39.45 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.87 Total: 7.13 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.59 Total: -1.92 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.01 Total: -50.71 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.60 Total: -13.56 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.71 Total: 15.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.16 -8.29 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989780041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.625 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds