Wall clock time and date at job start Tue Mar 31 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.87381 * 2 1 4 4 C 1.54322 * 109.88201 * 121.17496 * 2 1 3 5 5 C 1.55158 * 102.94246 * 141.61029 * 4 2 1 6 6 H 1.09005 * 111.03980 * 82.58548 * 5 4 2 7 7 N 1.46506 * 111.00535 * 206.42170 * 5 4 2 8 8 C 1.36939 * 120.00073 * 198.37373 * 7 5 4 9 9 H 1.08004 * 119.99859 * 0.02562 * 8 7 5 10 10 C 1.38805 * 119.99849 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00455 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00168 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47227 * 89.99498 * 12 10 8 14 14 H 1.48496 * 109.47434 * 209.99930 * 12 10 8 15 15 H 1.48507 * 109.46769 * 330.00032 * 12 10 8 16 16 C 1.54906 * 101.58230 * 324.49634 * 5 4 2 17 17 N 1.47022 * 109.88426 * 238.98260 * 2 1 3 18 18 C 1.34782 * 125.64573 * 61.67385 * 17 2 1 19 19 O 1.21272 * 120.00089 * 359.97438 * 18 17 2 20 20 C 1.50703 * 119.99780 * 179.97438 * 18 17 2 21 21 O 1.42895 * 109.46793 * 180.02562 * 20 18 17 22 22 C 1.35949 * 116.99949 * 180.02562 * 21 20 18 23 23 C 1.38708 * 120.02934 * 359.72005 * 22 21 20 24 24 C 1.38149 * 119.97161 * 179.79402 * 23 22 21 25 25 C 1.38455 * 120.02616 * 0.48458 * 24 23 22 26 26 F 1.35109 * 119.96628 * 179.72569 * 25 24 23 27 27 C 1.38451 * 120.06218 * 359.74952 * 25 24 23 28 28 C 1.38142 * 120.02803 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.46962 * 179.56481 * 1 2 3 30 30 H 1.09000 * 109.47124 * 299.56362 * 1 2 3 31 31 H 1.09000 * 109.47017 * 59.56165 * 1 2 3 32 32 H 1.09004 * 110.72505 * 23.24661 * 4 2 1 33 33 H 1.09000 * 110.72364 * 259.97389 * 4 2 1 34 34 H 0.97005 * 119.99811 * 18.65166 * 7 5 4 35 35 H 0.97000 * 120.00679 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36606 * 155.84645 * 16 5 4 37 37 H 1.08997 * 110.37139 * 278.17260 * 16 5 4 38 38 H 1.09002 * 109.47282 * 300.00696 * 20 18 17 39 39 H 1.09003 * 109.46703 * 60.00552 * 20 18 17 40 40 H 1.08004 * 120.01293 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.98534 * 180.21098 * 24 23 22 42 42 H 1.07998 * 119.98510 * 180.02562 * 27 25 24 43 43 H 1.08008 * 120.01411 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2876 -1.5152 0.6903 6 1 4.1658 -0.8703 0.6591 7 7 3.5532 -2.7216 1.4779 8 6 4.7800 -3.3264 1.4115 9 1 5.5519 -2.9137 0.7788 10 6 5.0314 -4.4697 2.1574 11 7 4.0909 -4.9724 2.9288 12 14 6.7051 -5.2943 2.0674 13 1 7.5963 -4.7203 3.1074 14 1 6.5513 -6.7532 2.2977 15 1 7.2985 -5.0648 0.7255 16 6 2.8145 -1.8784 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.8084 -0.3579 -2.4662 19 8 1.1450 0.6258 -2.7171 20 6 2.3852 -1.1838 -3.5870 21 8 2.0146 -0.6090 -4.8417 22 6 2.4568 -1.2374 -5.9632 23 6 3.2360 -2.3800 -5.8571 24 6 3.6812 -3.0200 -6.9976 25 6 3.3582 -2.5157 -8.2459 26 9 3.7989 -3.1396 -9.3604 27 6 2.5846 -1.3726 -8.3532 28 6 2.1342 -0.7333 -7.2144 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 1.3051 -1.4482 1.6163 33 1 2.3529 -0.0488 2.0200 34 1 2.8586 -3.0944 2.0434 35 1 4.2664 -5.7716 3.4498 36 1 3.6716 -2.0319 -1.3950 37 1 2.1886 -2.7705 -0.7167 38 1 3.4718 -1.2022 -3.5029 39 1 1.9987 -2.2011 -3.5247 40 1 3.4915 -2.7712 -4.8834 41 1 4.2851 -3.9117 -6.9153 42 1 2.3330 -0.9806 -9.3276 43 1 1.5310 0.1587 -7.2984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989780042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:08 Heat of formation + Delta-G solvation = -72.819472 kcal Electronic energy + Delta-G solvation = -26482.503960 eV Core-core repulsion = 22443.084283 eV Total energy + Delta-G solvation = -4039.419677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.04765 -40.64822 -39.77891 -37.81955 -36.96341 -34.30690 -32.17983 -31.55432 -31.46972 -29.97313 -28.58957 -27.90829 -25.55980 -24.04792 -23.49141 -22.64032 -21.60113 -20.41266 -18.97140 -18.69661 -17.64238 -17.38193 -17.07291 -16.70875 -16.42500 -15.90677 -15.70272 -15.16797 -14.96227 -14.50212 -14.20105 -13.97712 -13.84719 -13.64902 -13.42865 -13.24785 -13.07483 -12.81181 -12.71021 -12.48607 -12.35946 -12.16646 -11.79231 -11.25363 -11.21175 -11.17107 -11.06874 -10.86977 -10.73544 -10.40595 -10.11659 -9.87688 -9.73871 -9.50748 -9.12700 -8.51973 -8.38741 -7.20290 -5.94846 -3.26618 0.84220 0.92228 2.36441 2.58396 3.27113 3.32661 3.37829 3.40165 3.44305 4.03520 4.28462 4.41300 4.46126 4.51275 4.73382 4.85036 4.87020 4.96257 4.99324 5.03551 5.15435 5.25308 5.39250 5.45601 5.56399 5.58703 5.68524 5.72593 5.82089 5.83784 5.91768 5.96004 6.00497 6.07564 6.24476 6.33171 6.34750 6.37742 6.51725 6.72359 7.02192 7.53097 7.59727 8.16269 8.22648 9.34594 9.87276 10.22023 11.26866 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.003142 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.016235 B = 8908.472421 C =11427.214267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.173 3.827 6 H 0.066 0.934 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.067 3.933 17 N -0.606 5.606 18 C 0.531 3.469 19 O -0.529 6.529 20 C 0.043 3.957 21 O -0.287 6.287 22 C 0.125 3.875 23 C -0.182 4.182 24 C -0.109 4.109 25 C 0.055 3.945 26 F -0.143 7.143 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 7.110 -15.996 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.061 3.939 6 H 0.084 0.916 7 N -0.352 5.352 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.739 3.261 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.059 4.059 17 N -0.342 5.342 18 C 0.318 3.682 19 O -0.405 6.405 20 C -0.035 4.035 21 O -0.199 6.199 22 C 0.079 3.921 23 C -0.201 4.201 24 C -0.128 4.128 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.132 4.132 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.672 7.726 -16.216 18.560 hybrid contribution 0.971 -1.177 0.052 1.527 sum -3.701 6.549 -16.164 17.829 Atomic orbital electron populations 1.22144 0.94978 1.02313 1.02580 1.21542 0.94364 0.96116 0.84126 0.90760 1.23010 0.99012 0.99676 0.95748 1.21276 0.94684 0.89530 0.88439 0.91627 1.42329 1.14236 1.27463 1.51150 1.19223 0.90250 1.06320 1.22525 0.90936 1.24777 0.97944 0.98410 0.99189 1.69653 1.32561 1.24007 1.31269 0.86191 0.83484 0.78738 0.77726 1.21522 1.21656 1.20632 1.23629 0.94401 0.87546 1.00301 1.48521 1.52296 1.29324 1.04026 1.19483 0.81148 0.85295 0.82304 1.90705 1.39506 1.27136 1.83184 1.22535 1.01310 0.97700 0.81975 1.86156 1.71091 1.50956 1.11671 1.19091 0.94176 0.91865 0.87018 1.21227 1.02023 0.96939 0.99880 1.20973 1.00552 1.00814 0.90493 1.17591 1.01406 0.94816 0.82617 1.91493 1.88039 1.81865 1.50744 1.20946 0.98044 0.94630 0.99566 1.20289 1.03176 1.02007 0.88560 0.92450 0.91704 0.91552 0.90184 0.90078 0.77768 0.93229 0.91284 0.90841 0.88706 0.88720 0.84110 0.84256 0.84031 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.10 37.16 0.34 -1.75 16 2 C 0.14 1.94 3.46 -66.96 -0.23 1.71 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.94 6.10 -24.90 -0.15 -2.09 16 5 C 0.17 2.96 3.68 -65.78 -0.24 2.72 16 6 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 7 N -0.71 -15.76 5.28 -51.35 -0.27 -16.03 16 8 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.09 13.06 55.49 0.72 -25.37 16 12 Si 0.91 20.86 29.55 -169.99 -5.02 15.83 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.07 1.01 6.39 -2.53 -0.02 0.99 16 17 N -0.61 -8.69 3.06 -163.02 -0.50 -9.19 16 18 C 0.53 7.93 7.72 -10.98 -0.08 7.84 16 19 O -0.53 -9.56 15.54 -14.35 -0.22 -9.78 16 20 C 0.04 0.51 4.23 36.01 0.15 0.67 16 21 O -0.29 -3.79 9.67 -39.49 -0.38 -4.17 16 22 C 0.12 1.40 6.69 -39.24 -0.26 1.14 16 23 C -0.18 -1.81 9.04 -39.44 -0.36 -2.17 16 24 C -0.11 -1.05 10.02 -39.53 -0.40 -1.45 16 25 C 0.05 0.56 7.30 -39.42 -0.29 0.27 16 26 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 27 C -0.11 -1.02 10.02 -39.54 -0.40 -1.41 16 28 C -0.12 -1.20 9.98 -39.44 -0.39 -1.60 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.95 6.88 -51.93 -0.36 0.59 16 32 H 0.08 1.17 7.70 -51.93 -0.40 0.77 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.39 9.22 7.71 -40.82 -0.31 8.90 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 0.97 7.48 -51.93 -0.39 0.58 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.10 0.96 7.35 -51.93 -0.38 0.58 16 39 H 0.09 0.97 7.67 -51.93 -0.40 0.57 16 40 H 0.14 1.20 6.30 -52.48 -0.33 0.87 16 41 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -30.15 364.21 -8.64 -38.79 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.92 Total: 7.78 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.58 Total: -1.86 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.05 Total: -50.58 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.60 Total: -13.95 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.15 -8.64 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989780042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.026 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds