Wall clock time and date at job start Tue Mar 31 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32630 * 2 1 4 4 C 1.54918 * 110.36876 * 122.34993 * 2 1 3 5 5 C 1.55148 * 101.58167 * 155.84990 * 4 2 1 6 6 H 1.08998 * 110.72220 * 82.86619 * 5 4 2 7 7 N 1.46503 * 110.87175 * 206.06387 * 5 4 2 8 8 C 1.36936 * 120.00397 * 200.06473 * 7 5 4 9 9 H 1.08001 * 119.99567 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00243 * 180.02562 * 8 7 5 11 11 N 1.31626 * 120.00195 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00175 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47042 * 59.99756 * 12 10 8 14 14 H 1.48506 * 109.47413 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47026 * 299.99582 * 12 10 8 16 16 C 1.54327 * 102.94463 * 324.49998 * 5 4 2 17 17 N 1.47022 * 107.27058 * 22.19156 * 16 5 4 18 18 C 1.34771 * 125.64599 * 181.07936 * 17 16 5 19 19 O 1.21286 * 119.99927 * 179.97438 * 18 17 16 20 20 C 1.50694 * 120.00399 * 359.97438 * 18 17 16 21 21 O 1.42903 * 109.47476 * 179.97438 * 20 18 17 22 22 C 1.35954 * 117.00223 * 179.97438 * 21 20 18 23 23 C 1.38666 * 120.05961 * 359.72950 * 22 21 20 24 24 C 1.38182 * 119.96460 * 179.74282 * 23 22 21 25 25 C 1.38261 * 120.09669 * 0.53004 * 24 23 22 26 26 C 1.38255 * 120.12644 * 359.74624 * 25 24 23 27 27 C 1.38335 * 120.02952 * 359.97438 * 26 25 24 28 28 F 1.35104 * 120.04800 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.78493 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.78684 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.78665 * 1 2 3 32 32 H 1.08997 * 110.99971 * 273.92470 * 4 2 1 33 33 H 1.08998 * 111.00095 * 37.77321 * 4 2 1 34 34 H 0.97002 * 119.99615 * 20.06416 * 7 5 4 35 35 H 0.96989 * 120.00369 * 180.02562 * 11 10 8 36 36 H 1.09006 * 109.87630 * 262.77691 * 16 5 4 37 37 H 1.08992 * 109.88509 * 141.61368 * 16 5 4 38 38 H 1.09001 * 109.47103 * 299.99814 * 20 18 17 39 39 H 1.09006 * 109.47391 * 59.99822 * 20 18 17 40 40 H 1.07995 * 120.01875 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.95104 * 180.27274 * 24 23 22 42 42 H 1.08003 * 119.93692 * 179.75957 * 25 24 23 43 43 H 1.08003 * 119.98750 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 1.2269 5 6 3.4777 -1.2004 0.7331 6 1 4.1945 -0.3910 0.8719 7 7 3.9290 -2.4132 1.4199 8 6 5.2619 -2.7256 1.4531 9 1 5.9803 -2.0782 0.9724 10 6 5.6894 -3.8750 2.1034 11 7 4.8137 -4.6643 2.6888 12 14 7.5076 -4.3008 2.1492 13 1 8.2550 -3.2085 2.8226 14 1 7.7006 -5.5678 2.8995 15 1 8.0127 -4.4645 0.7623 16 6 3.2494 -1.4760 -0.7681 17 7 2.0431 -0.7373 -1.1690 18 6 1.4967 -0.7348 -2.4010 19 8 0.4955 -0.0860 -2.6190 20 6 2.1297 -1.5382 -3.5076 21 8 1.3720 -1.3751 -4.7082 22 6 1.8118 -2.0381 -5.8106 23 6 2.9519 -2.8244 -5.7395 24 6 3.3942 -3.5016 -6.8598 25 6 2.7079 -3.3878 -8.0547 26 6 1.5741 -2.6004 -8.1315 27 6 1.1233 -1.9247 -7.0117 28 9 0.0151 -1.1556 -7.0861 29 1 -0.3633 -1.0276 0.0141 30 1 -0.3633 0.5016 -0.8970 31 1 -0.3634 0.5260 0.8829 32 1 2.1398 -0.1284 2.1000 33 1 1.4511 -1.6494 1.4393 34 1 3.2837 -2.9948 1.8513 35 1 5.1124 -5.4672 3.1435 36 1 3.1014 -2.5437 -0.9306 37 1 4.1064 -1.1266 -1.3438 38 1 3.1497 -1.1905 -3.6713 39 1 2.1454 -2.5919 -3.2286 40 1 3.4912 -2.9110 -4.8079 41 1 4.2796 -4.1174 -6.8031 42 1 3.0581 -3.9152 -8.9297 43 1 1.0400 -2.5128 -9.0661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989789597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:23 Heat of formation + Delta-G solvation = -86.071684 kcal Electronic energy + Delta-G solvation = -26810.712408 eV Core-core repulsion = 22770.718072 eV Total energy + Delta-G solvation = -4039.994336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.86311 -41.65268 -40.77124 -38.94964 -38.15161 -35.95879 -33.44955 -33.11335 -31.70320 -31.20558 -30.12595 -29.00586 -26.66944 -25.81298 -24.18020 -23.52549 -22.79592 -21.77859 -20.18413 -19.65352 -19.13721 -18.19212 -17.96185 -17.86091 -17.45553 -17.17766 -16.66610 -16.52259 -16.04438 -15.76053 -15.43616 -15.38028 -15.21336 -14.94252 -14.59771 -14.36479 -14.03332 -13.71973 -13.59728 -13.34260 -13.29390 -13.08830 -12.91312 -12.77009 -12.69604 -12.38377 -12.26087 -12.21152 -12.12338 -12.09680 -11.70000 -11.55370 -11.00138 -10.68402 -9.97707 -9.72279 -9.29726 -9.05904 -7.92358 -5.22768 0.09867 0.21928 1.31601 1.40226 1.53297 1.54728 1.60646 2.35013 2.57771 2.59482 3.18308 3.25019 3.38854 3.70999 3.76884 3.80655 3.85243 3.87153 3.96550 3.98340 4.17993 4.25226 4.31007 4.31478 4.46417 4.48820 4.52099 4.71624 4.76392 4.85589 4.94642 5.06656 5.09622 5.14051 5.19560 5.23870 5.32777 5.40875 5.48528 5.57297 5.64033 6.14169 6.27818 6.40027 6.99474 7.36069 8.07461 8.30917 9.30327 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011530 B = 0.003244 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.922472 B = 8629.435406 C =10772.068929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.166 3.834 6 H 0.074 0.926 7 N -0.725 5.725 8 C -0.242 4.242 9 H 0.084 0.916 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.274 1.274 16 C 0.079 3.921 17 N -0.603 5.603 18 C 0.527 3.473 19 O -0.561 6.561 20 C 0.047 3.953 21 O -0.315 6.315 22 C 0.071 3.929 23 C -0.188 4.188 24 C -0.083 4.083 25 C -0.121 4.121 26 C -0.114 4.114 27 C 0.033 3.967 28 F -0.153 7.153 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.170 0.830 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 4.571 -18.158 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.164 4.164 5 C 0.056 3.944 6 H 0.092 0.908 7 N -0.364 5.364 8 C -0.374 4.374 9 H 0.102 0.898 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.798 3.202 13 H -0.206 1.206 14 H -0.229 1.229 15 H -0.200 1.200 16 C -0.046 4.046 17 N -0.338 5.338 18 C 0.315 3.685 19 O -0.440 6.440 20 C -0.030 4.030 21 O -0.229 6.229 22 C 0.026 3.974 23 C -0.206 4.206 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.133 4.133 27 C 0.013 3.987 28 F -0.131 7.131 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.062 5.076 -18.322 19.257 hybrid contribution 0.390 -0.613 0.653 0.976 sum -2.673 4.464 -17.669 18.419 Atomic orbital electron populations 1.22090 0.94015 1.01921 1.03459 1.22009 0.95049 0.95858 0.83476 0.89150 1.23062 0.95815 1.00342 0.97134 1.21348 0.94645 0.89404 0.89019 0.90802 1.42521 1.05041 1.25102 1.63720 1.19613 0.85219 1.04724 1.27823 0.89813 1.25514 1.01353 0.98152 1.01221 1.69801 1.34385 1.15771 1.41876 0.85290 0.80548 0.76643 0.77723 1.20557 1.22883 1.20026 1.23153 0.85758 0.96098 0.99634 1.48522 1.28646 1.48250 1.08407 1.19965 0.83910 0.81907 0.82711 1.90661 1.26356 1.44827 1.82192 1.22593 0.96261 1.01842 0.82335 1.86135 1.52618 1.66992 1.17126 1.19406 0.95793 0.96092 0.86146 1.21518 0.96237 1.00310 1.02573 1.21503 1.00202 0.97098 0.91334 1.21414 0.94171 0.98750 0.99596 1.21372 0.98419 0.96625 0.96850 1.17552 0.87492 0.99713 0.93915 1.91455 1.50896 1.73875 1.96922 0.93927 0.91634 0.89779 0.88279 0.91456 0.79217 0.94086 0.91780 0.90135 0.86356 0.87288 0.83010 0.81854 0.81225 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 8.71 71.98 0.63 -3.66 16 2 C 0.14 3.74 3.77 45.47 0.17 3.91 16 3 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 4 C -0.12 -3.53 6.12 31.99 0.20 -3.33 16 5 C 0.17 5.50 3.58 46.18 0.17 5.66 16 6 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 7 N -0.72 -32.01 5.18 -317.34 -1.64 -33.65 16 8 C -0.24 -11.92 9.98 84.03 0.84 -11.09 16 9 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 10 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 11 N -0.97 -55.53 13.06 21.65 0.28 -55.25 16 12 Si 0.97 42.55 29.55 68.60 2.03 44.58 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 C 0.08 2.31 6.24 86.73 0.54 2.85 16 17 N -0.60 -17.44 3.24 -788.15 -2.56 -19.99 16 18 C 0.53 16.59 7.71 87.66 0.68 17.27 16 19 O -0.56 -21.68 14.16 15.99 0.23 -21.45 16 20 C 0.05 1.21 4.41 71.23 0.31 1.52 16 21 O -0.32 -9.77 9.53 -74.00 -0.71 -10.47 16 22 C 0.07 1.84 6.69 22.53 0.15 1.99 16 23 C -0.19 -3.54 9.04 22.36 0.20 -3.33 16 24 C -0.08 -1.13 10.04 22.26 0.22 -0.91 16 25 C -0.12 -1.49 10.04 22.28 0.22 -1.26 16 26 C -0.11 -1.92 10.02 22.30 0.22 -1.69 16 27 C 0.03 0.83 7.31 22.45 0.16 1.00 16 28 F -0.15 -4.64 17.11 44.97 0.77 -3.87 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 2.08 5.89 -2.39 -0.01 2.06 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 34 H 0.38 18.31 7.73 -92.71 -0.72 17.59 16 35 H 0.25 14.13 8.31 -92.72 -0.77 13.36 16 36 H 0.06 2.05 8.03 -2.38 -0.02 2.03 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.12 2.36 7.65 -2.39 -0.02 2.34 16 39 H 0.11 2.43 7.68 -2.38 -0.02 2.41 16 40 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 41 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -69.13 362.65 3.90 -65.23 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.32 Total: 29.17 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.18 Total: 5.70 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.92 Total: -108.89 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.48 Total: -31.92 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.77 Total: -3.87 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.13 3.90 -65.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989789597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.844 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds