Wall clock time and date at job start Tue Mar 31 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.87280 * 2 1 4 4 C 1.54320 * 110.01331 * 121.09960 * 2 1 3 5 5 C 1.55154 * 102.94290 * 141.68384 * 4 2 1 6 6 H 1.09006 * 111.00140 * 206.38389 * 5 4 2 7 7 N 1.46505 * 111.00569 * 82.57286 * 5 4 2 8 8 C 1.36930 * 120.00016 * 154.99787 * 7 5 4 9 9 H 1.08001 * 120.00144 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00168 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00332 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99967 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47359 * 89.99778 * 12 10 8 14 14 H 1.48497 * 109.47705 * 209.99735 * 12 10 8 15 15 H 1.48499 * 109.47033 * 329.99941 * 12 10 8 16 16 C 1.55123 * 101.48369 * 324.33199 * 5 4 2 17 17 N 1.47018 * 109.88313 * 238.98805 * 2 1 3 18 18 C 1.34777 * 125.65319 * 61.44381 * 17 2 1 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 2 21 21 O 1.42898 * 109.47171 * 180.02562 * 20 18 17 22 22 C 1.35958 * 117.00089 * 180.02562 * 21 20 18 23 23 C 1.38653 * 120.06208 * 359.97438 * 22 21 20 24 24 C 1.38183 * 119.97128 * 179.97438 * 23 22 21 25 25 C 1.38260 * 120.09129 * 359.97438 * 24 23 22 26 26 C 1.38256 * 120.12807 * 0.04254 * 25 24 23 27 27 C 1.38336 * 120.03130 * 359.70540 * 26 25 24 28 28 F 1.35088 * 120.04989 * 180.27684 * 27 26 25 29 29 H 1.08994 * 109.47158 * 179.56266 * 1 2 3 30 30 H 1.08999 * 109.46873 * 299.56411 * 1 2 3 31 31 H 1.09000 * 109.46951 * 59.56099 * 1 2 3 32 32 H 1.09001 * 110.71772 * 260.04768 * 4 2 1 33 33 H 1.08997 * 110.72178 * 23.31344 * 4 2 1 34 34 H 0.96997 * 119.99462 * 335.00153 * 7 5 4 35 35 H 0.96999 * 120.00367 * 180.02562 * 11 10 8 36 36 H 1.09003 * 110.49564 * 278.45141 * 16 5 4 37 37 H 1.08999 * 110.34198 * 156.06541 * 16 5 4 38 38 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 39 39 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 40 40 H 1.08003 * 120.01749 * 359.95181 * 23 22 21 41 41 H 1.07997 * 119.95463 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.93579 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.98127 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0582 -0.7490 1.2416 5 6 3.2919 -1.5107 0.6893 6 1 3.4926 -2.4070 1.2763 7 7 4.4698 -0.6406 0.6451 8 6 5.7253 -1.1850 0.6925 9 1 5.8472 -2.2559 0.7621 10 6 6.8413 -0.3608 0.6502 11 7 8.0481 -0.8840 0.6963 12 14 6.6304 1.4913 0.5292 13 1 6.5612 2.0719 1.8943 14 1 7.7858 2.0747 -0.1987 15 1 5.3765 1.7999 -0.2040 16 6 2.8131 -1.8793 -0.7394 17 7 2.0300 -0.7123 -1.1849 18 6 1.8049 -0.3602 -2.4663 19 8 1.1386 0.6215 -2.7172 20 6 2.3812 -1.1865 -3.5871 21 8 2.0066 -0.6144 -4.8419 22 6 2.4479 -1.2435 -5.9635 23 6 3.2254 -2.3867 -5.8582 24 6 3.6725 -3.0249 -6.9994 25 6 3.3452 -2.5254 -8.2464 26 6 2.5705 -1.3856 -8.3559 27 6 2.1157 -0.7455 -7.2169 28 9 1.3540 0.3651 -7.3236 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 2.3557 -0.0451 2.0189 33 1 1.3105 -1.4471 1.6179 34 1 4.3601 0.3211 0.5824 35 1 8.8280 -0.3080 0.6670 36 1 2.1853 -2.7700 -0.7136 37 1 3.6681 -2.0358 -1.3970 38 1 1.9973 -2.2046 -3.5225 39 1 3.4680 -1.2021 -3.5053 40 1 3.4818 -2.7780 -4.8848 41 1 4.2785 -3.9151 -6.9171 42 1 3.6957 -3.0264 -9.1366 43 1 2.3159 -0.9977 -9.3311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989789599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:29 Heat of formation + Delta-G solvation = -66.614645 kcal Electronic energy + Delta-G solvation = -27262.502646 eV Core-core repulsion = 23223.352031 eV Total energy + Delta-G solvation = -4039.150615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.85096 -40.53044 -39.72061 -37.91732 -37.05046 -34.20545 -32.13226 -31.57330 -30.92488 -30.33663 -29.10048 -28.00796 -25.67542 -23.69362 -23.24534 -22.68710 -21.85039 -20.22360 -18.95044 -18.68079 -17.80595 -17.24244 -16.98713 -16.72483 -16.42572 -16.00431 -15.47176 -15.19452 -14.84079 -14.56183 -14.46457 -14.17199 -13.88416 -13.57805 -13.36408 -13.04361 -12.81503 -12.75025 -12.48375 -12.40440 -12.06791 -12.04852 -11.91908 -11.51590 -11.41183 -11.30440 -11.17513 -10.93376 -10.75014 -10.44537 -10.16765 -9.72671 -9.67203 -9.18912 -9.16022 -8.48085 -8.40876 -7.44761 -5.91919 -3.29606 0.88721 1.02419 2.39687 2.68007 3.29867 3.34518 3.34625 3.39278 3.46191 4.06118 4.36554 4.47247 4.52310 4.64166 4.79764 4.86665 4.95283 4.96441 4.98152 5.04095 5.07908 5.19919 5.24389 5.42631 5.49479 5.59459 5.70056 5.72296 5.80647 5.81308 5.91903 5.93386 5.98313 6.13568 6.20320 6.23414 6.34538 6.38730 6.45967 6.57596 7.05940 7.64810 7.81777 8.25064 8.27341 9.03712 9.76646 9.94719 11.25447 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003789 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.818179 B = 7387.278038 C = 8660.339088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.141 4.141 5 C 0.176 3.824 6 H 0.085 0.915 7 N -0.736 5.736 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.013 3.987 11 N -0.928 5.928 12 Si 0.879 3.121 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.062 3.938 17 N -0.599 5.599 18 C 0.533 3.467 19 O -0.527 6.527 20 C 0.044 3.956 21 O -0.283 6.283 22 C 0.101 3.899 23 C -0.183 4.183 24 C -0.087 4.087 25 C -0.132 4.132 26 C -0.118 4.118 27 C 0.069 3.931 28 F -0.131 7.131 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 -6.227 -11.478 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.180 4.180 5 C 0.064 3.936 6 H 0.103 0.897 7 N -0.377 5.377 8 C -0.385 4.385 9 H 0.111 0.889 10 C -0.184 4.184 11 N -0.574 5.574 12 Si 0.709 3.291 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.063 4.063 17 N -0.335 5.335 18 C 0.320 3.680 19 O -0.403 6.403 20 C -0.034 4.034 21 O -0.195 6.195 22 C 0.054 3.946 23 C -0.202 4.202 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.137 4.137 27 C 0.049 3.951 28 F -0.109 7.109 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.197 0.803 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.247 -5.595 -11.640 18.501 hybrid contribution 0.137 1.327 -0.089 1.337 sum -13.110 -4.269 -11.729 18.101 Atomic orbital electron populations 1.22137 0.95024 1.02008 1.02687 1.21533 0.93977 0.96556 0.84374 0.90964 1.23131 0.98431 1.00239 0.96242 1.21309 0.86158 0.94503 0.91659 0.89674 1.42716 1.01854 1.04325 1.88815 1.19047 0.81175 0.94149 1.44086 0.88873 1.24648 0.95079 0.97310 1.01325 1.69686 0.96976 1.34334 1.56409 0.86645 0.77220 0.87242 0.78012 1.20823 1.21561 1.20296 1.23535 0.94550 0.86981 1.01280 1.48332 1.52104 1.29067 1.03954 1.19429 0.81045 0.85323 0.82252 1.90716 1.39384 1.27061 1.83115 1.22551 1.01697 0.97364 0.81788 1.86199 1.70807 1.50932 1.11561 1.19109 0.96254 0.93213 0.86055 1.21278 1.01723 0.96247 1.00925 1.21055 0.98307 0.99570 0.91606 1.20938 0.99655 0.96358 0.98113 1.21024 0.99044 0.96523 0.97066 1.17013 0.98977 0.87690 0.91388 1.91518 1.73153 1.49577 1.96697 0.92620 0.91803 0.91481 0.89657 0.90139 0.80347 0.92842 0.91806 0.89946 0.88907 0.88257 0.84155 0.84806 0.84830 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.11 37.16 0.34 -1.72 16 2 C 0.14 2.03 3.44 -66.96 -0.23 1.80 16 3 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 4 C -0.14 -1.88 6.07 -24.90 -0.15 -2.03 16 5 C 0.18 2.83 3.72 -65.67 -0.24 2.58 16 6 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 7 N -0.74 -15.68 5.05 -51.24 -0.26 -15.94 16 8 C -0.26 -6.57 10.44 -15.06 -0.16 -6.72 16 9 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 10 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 11 N -0.93 -27.72 13.97 55.49 0.78 -26.95 16 12 Si 0.88 21.54 27.74 -169.99 -4.71 16.83 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 16 C 0.06 0.88 6.41 -2.41 -0.02 0.87 16 17 N -0.60 -9.28 3.06 -162.88 -0.50 -9.78 16 18 C 0.53 9.05 7.72 -10.98 -0.08 8.96 16 19 O -0.53 -10.81 15.53 -14.35 -0.22 -11.03 16 20 C 0.04 0.62 4.22 36.01 0.15 0.77 16 21 O -0.28 -4.58 9.53 -39.52 -0.38 -4.95 16 22 C 0.10 1.38 6.69 -39.18 -0.26 1.12 16 23 C -0.18 -1.99 9.04 -39.45 -0.36 -2.34 16 24 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 25 C -0.13 -1.11 10.04 -39.57 -0.40 -1.51 16 26 C -0.12 -1.17 10.02 -39.54 -0.40 -1.56 16 27 C 0.07 0.92 7.31 -39.30 -0.29 0.63 16 28 F -0.13 -2.00 17.11 2.25 0.04 -1.96 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 34 H 0.36 8.01 5.73 -40.82 -0.23 7.77 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.25 7.48 -51.93 -0.39 0.86 16 38 H 0.09 0.99 7.66 -51.93 -0.40 0.60 16 39 H 0.10 1.31 7.37 -51.93 -0.38 0.93 16 40 H 0.14 1.30 6.30 -52.48 -0.33 0.97 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -33.54 361.12 -8.29 -41.83 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.89 Total: 6.56 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.59 Total: -0.04 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.02 Total: -52.67 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.60 Total: -15.99 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.54 -8.29 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989789599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.781 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds