Wall clock time and date at job start Tue Mar 31 2020 14:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87593 * 2 1 4 4 C 1.54322 * 109.88114 * 238.82466 * 2 1 3 5 5 C 1.55158 * 102.94246 * 262.77724 * 4 2 1 6 6 H 1.09005 * 111.03980 * 82.58548 * 5 4 2 7 7 N 1.46506 * 111.00535 * 206.42170 * 5 4 2 8 8 C 1.36939 * 120.00073 * 198.37373 * 7 5 4 9 9 H 1.08004 * 119.99859 * 0.02562 * 8 7 5 10 10 C 1.38805 * 119.99849 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00056 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00155 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46896 * 90.00225 * 12 10 8 14 14 H 1.48501 * 109.47275 * 210.00265 * 12 10 8 15 15 H 1.48499 * 109.47039 * 330.00065 * 12 10 8 16 16 C 1.54906 * 101.58230 * 324.49634 * 5 4 2 17 17 N 1.47022 * 109.88139 * 121.01926 * 2 1 3 18 18 C 1.34776 * 125.64730 * 300.43346 * 17 2 1 19 19 O 1.21287 * 119.99900 * 0.02713 * 18 17 2 20 20 C 1.50694 * 120.00239 * 180.02562 * 18 17 2 21 21 O 1.42900 * 109.47689 * 180.02562 * 20 18 17 22 22 C 1.35955 * 117.00499 * 179.97438 * 21 20 18 23 23 C 1.38663 * 120.05923 * 359.73114 * 22 21 20 24 24 C 1.38183 * 119.96605 * 179.72003 * 23 22 21 25 25 C 1.38262 * 120.09245 * 0.54975 * 24 23 22 26 26 C 1.38253 * 120.13065 * 359.72236 * 25 24 23 27 27 C 1.38331 * 120.02765 * 0.02562 * 26 25 24 28 28 F 1.35099 * 120.05168 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46731 * 300.44058 * 1 2 3 30 30 H 1.09004 * 109.47045 * 60.43532 * 1 2 3 31 31 H 1.09000 * 109.47164 * 180.43810 * 1 2 3 32 32 H 1.09004 * 110.72505 * 144.41356 * 4 2 1 33 33 H 1.09000 * 110.72364 * 21.14084 * 4 2 1 34 34 H 0.97005 * 119.99811 * 18.65166 * 7 5 4 35 35 H 0.97000 * 119.99835 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36606 * 155.84645 * 16 5 4 37 37 H 1.09001 * 110.37005 * 278.06247 * 16 5 4 38 38 H 1.09007 * 109.47257 * 300.00556 * 20 18 17 39 39 H 1.09004 * 109.47060 * 59.99967 * 20 18 17 40 40 H 1.08002 * 120.01633 * 359.96998 * 23 22 21 41 41 H 1.07999 * 119.95592 * 180.27426 * 24 23 22 42 42 H 1.08004 * 119.93133 * 179.74508 * 25 24 23 43 43 H 1.07999 * 119.98766 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 -1.2417 5 6 2.3518 -2.1705 -0.6894 6 1 1.4455 -2.7752 -0.6565 7 7 3.3936 -2.8334 -1.4778 8 6 3.5424 -4.1930 -1.4103 9 1 2.8914 -4.7767 -0.7762 10 6 4.5298 -4.8210 -2.1569 11 7 4.6731 -6.1278 -2.0917 12 14 5.6552 -3.8116 -3.2541 13 1 6.8529 -3.3925 -2.4827 14 1 6.0778 -4.6316 -4.4178 15 1 4.9295 -2.6082 -3.7341 16 6 2.8568 -1.8489 0.7393 17 7 2.0300 -0.7125 1.1849 18 6 1.7754 -0.3811 2.4662 19 8 1.0786 0.5794 2.7172 20 6 2.3565 -1.2038 3.5870 21 8 1.9459 -0.6571 4.8418 22 6 2.3866 -1.2866 5.9634 23 6 3.1925 -2.4101 5.8580 24 6 3.6441 -3.0451 6.9993 25 6 3.2842 -2.5684 8.2462 26 6 2.4763 -1.4519 8.3558 27 6 2.0255 -0.8092 7.2168 28 9 1.2365 0.2823 7.3234 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 2.9657 -0.2855 -1.6179 33 1 1.2918 -0.7918 -2.0190 34 1 3.9806 -2.3088 -2.0444 35 1 5.3629 -6.5667 -2.6137 36 1 2.7087 -2.7062 1.3959 37 1 3.9096 -1.5677 0.7152 38 1 2.0017 -2.2313 3.5053 39 1 3.4445 -1.1890 3.5224 40 1 3.4704 -2.7864 4.8846 41 1 4.2753 -3.9175 6.9170 42 1 3.6353 -3.0692 9.1365 43 1 2.1970 -1.0813 9.3310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989789600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:33 Heat of formation + Delta-G solvation = -66.162510 kcal Electronic energy + Delta-G solvation = -26822.899946 eV Core-core repulsion = 22783.768936 eV Total energy + Delta-G solvation = -4039.131009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.90611 -40.60997 -39.78595 -37.96919 -37.12151 -34.43154 -32.23646 -31.59592 -30.97462 -30.39778 -28.96666 -28.07574 -25.67259 -23.93607 -23.20694 -22.72613 -21.70630 -20.40235 -19.09840 -18.75622 -17.80381 -17.28363 -17.12425 -16.73899 -16.47792 -15.78999 -15.58026 -15.26789 -15.14091 -14.63062 -14.45832 -14.09731 -13.86308 -13.67675 -13.32998 -13.12800 -12.92010 -12.81113 -12.72052 -12.52394 -12.08934 -12.01286 -11.97510 -11.63108 -11.45871 -11.37338 -11.16182 -10.95060 -10.74949 -10.46643 -10.15489 -9.79797 -9.74459 -9.24090 -9.15115 -8.57919 -8.47034 -7.50712 -5.94121 -3.33130 0.83658 0.96866 2.30172 2.55923 3.25564 3.28220 3.29517 3.33613 3.37262 4.00160 4.27123 4.43526 4.47044 4.58236 4.74428 4.82993 4.87471 4.91412 4.93589 4.96038 5.06309 5.19122 5.20914 5.40139 5.44726 5.64718 5.67037 5.68305 5.76151 5.78162 5.88686 5.88897 5.99762 6.08595 6.09444 6.22073 6.29768 6.35147 6.45864 6.61997 6.98911 7.53566 7.78979 8.13964 8.24282 9.00426 9.72634 9.90203 11.23226 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.003128 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.634688 B = 8948.747395 C =10706.256918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.180 3.820 6 H 0.074 0.926 7 N -0.736 5.736 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.927 5.927 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.068 3.932 17 N -0.607 5.607 18 C 0.532 3.468 19 O -0.525 6.525 20 C 0.044 3.956 21 O -0.283 6.283 22 C 0.099 3.901 23 C -0.183 4.183 24 C -0.087 4.087 25 C -0.132 4.132 26 C -0.118 4.118 27 C 0.070 3.930 28 F -0.131 7.131 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.365 0.635 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 8.906 15.436 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.068 3.932 6 H 0.092 0.908 7 N -0.378 5.378 8 C -0.386 4.386 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.574 5.574 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.058 4.058 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.401 6.401 20 C -0.035 4.035 21 O -0.195 6.195 22 C 0.052 3.948 23 C -0.202 4.202 24 C -0.105 4.105 25 C -0.150 4.150 26 C -0.137 4.137 27 C 0.050 3.950 28 F -0.109 7.109 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.199 0.801 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.658 9.379 15.646 18.605 hybrid contribution 1.048 0.451 -0.887 1.445 sum -2.611 9.830 14.760 17.925 Atomic orbital electron populations 1.22160 0.94711 1.02563 1.02711 1.21507 0.94671 0.95922 0.83957 0.90895 1.23031 1.01889 0.96752 0.96167 1.21230 0.92591 0.91174 0.88203 0.90779 1.42677 1.37861 1.05359 1.51895 1.19044 1.14741 0.81255 1.23583 0.88986 1.24687 0.98893 0.95368 0.99591 1.69698 1.35761 1.07398 1.44506 0.86579 0.81392 0.79695 0.81009 1.20934 1.21569 1.20165 1.23539 0.95069 0.87083 1.00112 1.48480 1.50678 1.31138 1.04024 1.19473 0.81389 0.85046 0.82228 1.90724 1.37993 1.28241 1.83108 1.22549 1.00937 0.98161 0.81829 1.86195 1.69555 1.52247 1.11526 1.19098 0.96254 0.93396 0.86009 1.21297 1.01442 0.96468 1.00980 1.21077 0.98439 0.99403 0.91595 1.20953 0.99264 0.96621 0.98144 1.21030 0.98952 0.96595 0.97090 1.17006 0.98208 0.88450 0.91369 1.91522 1.71641 1.51086 1.96702 0.91304 0.91739 0.92215 0.90626 0.89648 0.80149 0.92808 0.90806 0.90870 0.88510 0.88648 0.84102 0.84742 0.84798 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.06 37.16 0.34 -1.75 16 2 C 0.14 1.91 3.49 -66.95 -0.23 1.68 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -1.89 6.12 -24.90 -0.15 -2.04 16 5 C 0.18 2.96 3.68 -65.78 -0.24 2.72 16 6 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 7 N -0.74 -15.28 5.08 -51.35 -0.26 -15.55 16 8 C -0.26 -6.53 10.47 -15.06 -0.16 -6.69 16 9 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -27.28 13.97 55.49 0.78 -26.51 16 12 Si 0.88 20.44 27.73 -169.99 -4.71 15.73 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -5.95 6.52 56.52 0.37 -5.58 16 16 C 0.07 0.99 6.38 -2.53 -0.02 0.97 16 17 N -0.61 -8.64 3.08 -163.02 -0.50 -9.14 16 18 C 0.53 8.14 7.71 -10.99 -0.08 8.05 16 19 O -0.52 -9.81 15.40 -14.36 -0.22 -10.03 16 20 C 0.04 0.55 4.23 36.00 0.15 0.70 16 21 O -0.28 -4.19 9.53 -39.51 -0.38 -4.56 16 22 C 0.10 1.25 6.69 -39.18 -0.26 0.99 16 23 C -0.18 -1.84 9.04 -39.44 -0.36 -2.20 16 24 C -0.09 -0.72 10.04 -39.59 -0.40 -1.12 16 25 C -0.13 -1.02 10.04 -39.57 -0.40 -1.41 16 26 C -0.12 -1.07 10.02 -39.54 -0.40 -1.47 16 27 C 0.07 0.86 7.31 -39.30 -0.29 0.57 16 28 F -0.13 -1.86 17.11 2.25 0.04 -1.82 16 29 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 33 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 34 H 0.36 7.48 5.57 -40.82 -0.23 7.25 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.03 7.48 -51.93 -0.39 0.64 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.03 7.36 -51.93 -0.38 0.65 16 39 H 0.10 1.00 7.68 -51.93 -0.40 0.60 16 40 H 0.14 1.22 6.30 -52.49 -0.33 0.88 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -32.25 360.62 -8.29 -40.54 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.87 Total: 6.70 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.59 Total: -0.79 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.01 Total: -51.20 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.60 Total: -14.59 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.71 Total: 15.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.25 -8.29 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989789600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.623 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds