Wall clock time and date at job start Tue Mar 31 2020 14:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 C 1.50703 * 109.47097 * 120.00246 * 2 1 3 5 5 C 1.33813 * 124.52076 * 119.99877 * 4 2 1 6 6 C 1.37478 * 115.10152 * 179.74652 * 5 4 2 7 7 C 1.36651 * 113.29115 * 0.25228 * 6 5 4 8 8 C 1.46580 * 125.45502 * 179.97438 * 7 6 5 9 9 O 1.21709 * 120.00425 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00147 * 179.97438 * 8 7 6 11 11 C 1.47015 * 125.64401 * 359.69712 * 10 8 7 12 12 C 1.54341 * 107.26523 * 178.84852 * 11 10 8 13 13 H 1.08996 * 110.66942 * 96.51484 * 12 11 10 14 14 N 1.46497 * 110.85053 * 219.67270 * 12 11 10 15 15 C 1.36937 * 119.99726 * 268.69131 * 14 12 11 16 16 H 1.07995 * 120.00235 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99681 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00175 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99916 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47429 * 59.99657 * 19 17 15 21 21 H 1.48499 * 109.47613 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47062 * 300.00210 * 19 17 15 23 23 C 1.55164 * 103.01772 * 338.13646 * 12 11 10 24 24 C 1.47422 * 125.64996 * 179.97438 * 10 8 7 25 25 H 1.09002 * 110.36582 * 85.25525 * 24 10 8 26 26 C 1.53005 * 110.36955 * 322.93682 * 24 10 8 27 27 S 1.70620 * 124.52217 * 300.14496 * 4 2 1 28 28 H 1.09003 * 109.47068 * 299.99353 * 1 2 3 29 29 H 1.08996 * 109.47028 * 60.00033 * 1 2 3 30 30 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46872 * 239.99888 * 2 1 3 32 32 H 1.09003 * 109.47158 * 60.00705 * 3 2 1 33 33 H 1.08999 * 109.46618 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47225 * 299.99846 * 3 2 1 35 35 H 1.08002 * 122.45417 * 0.02562 * 5 4 2 36 36 H 1.07991 * 123.35513 * 180.20982 * 6 5 4 37 37 H 1.09002 * 109.88334 * 298.38834 * 11 10 8 38 38 H 1.09002 * 109.88951 * 59.56086 * 11 10 8 39 39 H 0.97001 * 120.00174 * 88.69036 * 14 12 11 40 40 H 0.97001 * 120.00487 * 180.02562 * 18 17 15 41 41 H 1.09002 * 111.00345 * 277.23436 * 23 12 11 42 42 H 1.08995 * 111.00265 * 153.37891 * 23 12 11 43 43 H 1.09003 * 109.46873 * 61.44802 * 26 24 10 44 44 H 1.08999 * 109.47360 * 181.45220 * 26 24 10 45 45 H 1.09003 * 109.46669 * 301.45007 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8048 -1.8030 1.2130 6 6 3.1554 -2.2892 2.4503 7 6 2.6384 -1.5598 3.4838 8 6 2.8422 -1.8404 4.9080 9 8 3.5203 -2.7915 5.2500 10 7 2.2786 -1.0451 5.8389 11 6 1.4453 0.1351 5.5667 12 6 1.0023 0.7073 6.9299 13 1 1.6586 1.5214 7.2371 14 7 -0.3906 1.1582 6.8783 15 6 -0.6786 2.4548 6.5450 16 1 0.1211 3.1450 6.3206 17 6 -1.9984 2.8822 6.4966 18 7 -2.9730 2.0411 6.7705 19 14 -2.3913 4.6511 6.0426 20 1 -1.8703 4.9405 4.6824 21 1 -3.8624 4.8524 6.0630 22 1 -1.7533 5.5669 7.0222 23 6 1.1510 -0.5074 7.8838 24 6 2.4004 -1.2114 7.2987 25 1 3.3101 -0.7320 7.6604 26 6 2.3968 -2.6962 7.6677 27 16 1.6891 -0.2313 2.8316 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.1329 -2.2662 0.2942 36 1 3.7767 -3.1611 2.5914 37 1 2.0244 0.8797 5.0205 38 1 0.5695 -0.1552 4.9864 39 1 -1.1089 0.5383 7.0802 40 1 -3.8953 2.3396 6.7364 41 1 0.2765 -1.1558 7.8300 42 1 1.3305 -0.1802 8.9079 43 1 3.2514 -3.1882 7.2030 44 1 2.4615 -2.8017 8.7507 45 1 1.4750 -3.1567 7.3122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989839415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:44 Heat of formation + Delta-G solvation = 0.054466 kcal Electronic energy + Delta-G solvation = -25409.878277 eV Core-core repulsion = 21939.831827 eV Total energy + Delta-G solvation = -3470.046450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99358 -38.34908 -37.16015 -35.09925 -34.21589 -31.94220 -31.44109 -28.81429 -28.42704 -27.29733 -25.57890 -24.91872 -23.84485 -22.20683 -21.30008 -20.50715 -19.89165 -18.42704 -17.51231 -17.16986 -16.29920 -15.74092 -15.44758 -14.68208 -14.64983 -14.47541 -14.00211 -13.76379 -13.67894 -13.56041 -13.35928 -12.93711 -12.71479 -12.57791 -12.37571 -12.15833 -12.03496 -11.90381 -11.80462 -11.38423 -11.34539 -11.29006 -11.20834 -11.10609 -10.88960 -10.72280 -10.38638 -10.28437 -10.12029 -9.80352 -9.52884 -9.04553 -8.69410 -8.48977 -8.21600 -7.16355 -5.89867 -3.21403 0.64002 1.63358 2.09772 2.47079 3.16410 3.36112 3.40337 3.41718 3.42202 4.46488 4.49005 4.68016 4.76761 4.97933 5.04277 5.17681 5.21035 5.24374 5.41118 5.45274 5.48787 5.53507 5.53886 5.59732 5.65614 5.70290 5.81529 5.83657 5.84781 5.98779 6.04015 6.07402 6.08111 6.11821 6.15635 6.25527 6.37390 6.42788 6.45098 6.47013 6.67162 6.80374 7.57882 7.74373 8.26794 8.34626 9.39227 9.91820 10.27070 11.31784 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.005380 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.861400 B = 5202.818557 C = 7889.023281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.214 4.214 5 C -0.160 4.160 6 C -0.060 4.060 7 C -0.272 4.272 8 C 0.603 3.397 9 O -0.543 6.543 10 N -0.606 5.606 11 C 0.059 3.941 12 C 0.178 3.822 13 H 0.071 0.929 14 N -0.710 5.710 15 C -0.252 4.252 16 H 0.073 0.927 17 C -0.005 4.005 18 N -0.928 5.928 19 Si 0.907 3.093 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C -0.137 4.137 24 C 0.139 3.861 25 H 0.075 0.925 26 C -0.164 4.164 27 S 0.255 5.745 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.388 0.612 40 H 0.258 0.742 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -5.533 -9.599 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.046 4.046 3 C -0.207 4.207 4 C -0.334 4.334 5 C -0.190 4.190 6 C -0.094 4.094 7 C -0.393 4.393 8 C 0.392 3.608 9 O -0.424 6.424 10 N -0.339 5.339 11 C -0.069 4.069 12 C 0.065 3.935 13 H 0.089 0.911 14 N -0.350 5.350 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.737 3.263 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.176 4.176 24 C 0.036 3.964 25 H 0.093 0.907 26 C -0.221 4.221 27 S 0.526 5.474 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.845 -4.674 -8.867 14.049 hybrid contribution 0.259 -0.406 -1.121 1.220 sum 10.104 -5.080 -9.988 15.088 Atomic orbital electron populations 1.21960 0.93724 1.02476 1.02683 1.19725 0.96046 0.95578 0.93236 1.21948 1.01402 0.94766 1.02598 1.24800 1.04338 1.01730 1.02513 1.19858 1.02678 0.97934 0.98524 1.20603 0.98796 0.99663 0.90325 1.24649 1.11863 1.05398 0.97372 1.16609 0.79229 0.81781 0.83179 1.90720 1.40894 1.29653 1.81085 1.48462 1.50213 1.28620 1.06583 1.23522 0.94212 0.86207 1.02961 1.21124 0.88954 0.93795 0.89643 0.91111 1.42387 1.00151 1.10605 1.81837 1.19207 0.91832 0.87180 1.40076 0.90925 1.24761 0.95621 0.97983 1.01847 1.69646 0.99009 1.34250 1.54583 0.86290 0.77135 0.84482 0.78393 1.21076 1.21611 1.21084 1.23197 0.96870 0.97841 0.99737 1.21878 0.98578 0.96938 0.79021 0.90738 1.22169 1.03865 0.95058 1.01022 1.84060 1.44928 1.25247 0.93205 0.91860 0.91860 0.92193 0.89819 0.92000 0.92276 0.91857 0.84672 0.83524 0.91696 0.90184 0.77768 0.93214 0.90401 0.89890 0.89769 0.92207 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.08 37.16 0.34 -1.21 16 2 C -0.03 -0.26 3.25 -91.77 -0.30 -0.56 16 3 C -0.15 -1.44 9.08 37.16 0.34 -1.10 16 4 C -0.21 -2.64 4.95 -35.86 -0.18 -2.82 16 5 C -0.16 -1.93 9.95 -41.41 -0.41 -2.34 16 6 C -0.06 -0.83 10.01 -40.43 -0.40 -1.24 16 7 C -0.27 -4.26 6.38 -36.79 -0.23 -4.49 16 8 C 0.60 10.47 7.60 -12.89 -0.10 10.38 16 9 O -0.54 -10.32 14.49 5.18 0.08 -10.24 16 10 N -0.61 -10.02 3.24 -164.61 -0.53 -10.55 16 11 C 0.06 1.01 4.93 -3.06 -0.02 0.99 16 12 C 0.18 3.24 3.61 -66.08 -0.24 3.00 16 13 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 14 N -0.71 -16.31 5.15 -51.64 -0.27 -16.58 16 15 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 18 N -0.93 -26.48 13.06 55.49 0.72 -25.75 16 19 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.14 -2.14 6.13 -24.59 -0.15 -2.29 16 24 C 0.14 2.08 3.76 -66.43 -0.25 1.83 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.16 -2.34 8.71 37.16 0.32 -2.02 16 27 S 0.26 3.65 17.64 -107.50 -1.90 1.75 16 28 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.06 1.08 7.01 -51.93 -0.36 0.71 16 38 H 0.08 1.50 6.69 -51.93 -0.35 1.15 16 39 H 0.39 9.58 7.76 -40.82 -0.32 9.27 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.08 1.28 7.92 -51.93 -0.41 0.86 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.34 5.88 -51.93 -0.31 1.03 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -29.12 371.98 -10.02 -39.14 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.18 Total: 9.25 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.53 Total: -8.70 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.08 Total: -52.89 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.90 Total: 1.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.12 -10.02 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989839415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.190 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds