Wall clock time and date at job start Tue Mar 31 2020 14:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 C 1.50703 * 109.47097 * 120.00246 * 2 1 3 5 5 C 1.33813 * 124.52076 * 119.99877 * 4 2 1 6 6 C 1.37478 * 115.10152 * 179.74652 * 5 4 2 7 7 C 1.36651 * 113.29115 * 0.25228 * 6 5 4 8 8 C 1.46580 * 125.45502 * 179.97438 * 7 6 5 9 9 O 1.21709 * 120.00425 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00147 * 179.97438 * 8 7 6 11 11 C 1.47015 * 125.64401 * 359.69712 * 10 8 7 12 12 C 1.54341 * 107.26523 * 178.84852 * 11 10 8 13 13 H 1.08996 * 110.66942 * 96.51484 * 12 11 10 14 14 N 1.46497 * 110.85053 * 219.67270 * 12 11 10 15 15 C 1.36937 * 119.99726 * 268.69131 * 14 12 11 16 16 H 1.07995 * 120.00235 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99681 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00175 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99916 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47429 * 59.99657 * 19 17 15 21 21 H 1.48499 * 109.47613 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47062 * 300.00210 * 19 17 15 23 23 C 1.55164 * 103.01772 * 338.13646 * 12 11 10 24 24 C 1.47422 * 125.64996 * 179.97438 * 10 8 7 25 25 H 1.09002 * 110.36582 * 85.25525 * 24 10 8 26 26 C 1.53005 * 110.36955 * 322.93682 * 24 10 8 27 27 S 1.70620 * 124.52217 * 300.14496 * 4 2 1 28 28 H 1.09003 * 109.47068 * 299.99353 * 1 2 3 29 29 H 1.08996 * 109.47028 * 60.00033 * 1 2 3 30 30 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46872 * 239.99888 * 2 1 3 32 32 H 1.09003 * 109.47158 * 60.00705 * 3 2 1 33 33 H 1.08999 * 109.46618 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47225 * 299.99846 * 3 2 1 35 35 H 1.08002 * 122.45417 * 0.02562 * 5 4 2 36 36 H 1.07991 * 123.35513 * 180.20982 * 6 5 4 37 37 H 1.09002 * 109.88334 * 298.38834 * 11 10 8 38 38 H 1.09002 * 109.88951 * 59.56086 * 11 10 8 39 39 H 0.97001 * 120.00174 * 88.69036 * 14 12 11 40 40 H 0.97001 * 120.00487 * 180.02562 * 18 17 15 41 41 H 1.09002 * 111.00345 * 277.23436 * 23 12 11 42 42 H 1.08995 * 111.00265 * 153.37891 * 23 12 11 43 43 H 1.09003 * 109.46873 * 61.44802 * 26 24 10 44 44 H 1.08999 * 109.47360 * 181.45220 * 26 24 10 45 45 H 1.09003 * 109.46669 * 301.45007 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8048 -1.8030 1.2130 6 6 3.1554 -2.2892 2.4503 7 6 2.6384 -1.5598 3.4838 8 6 2.8422 -1.8404 4.9080 9 8 3.5203 -2.7915 5.2500 10 7 2.2786 -1.0451 5.8389 11 6 1.4453 0.1351 5.5667 12 6 1.0023 0.7073 6.9299 13 1 1.6586 1.5214 7.2371 14 7 -0.3906 1.1582 6.8783 15 6 -0.6786 2.4548 6.5450 16 1 0.1211 3.1450 6.3206 17 6 -1.9984 2.8822 6.4966 18 7 -2.9730 2.0411 6.7705 19 14 -2.3913 4.6511 6.0426 20 1 -1.8703 4.9405 4.6824 21 1 -3.8624 4.8524 6.0630 22 1 -1.7533 5.5669 7.0222 23 6 1.1510 -0.5074 7.8838 24 6 2.4004 -1.2114 7.2987 25 1 3.3101 -0.7320 7.6604 26 6 2.3968 -2.6962 7.6677 27 16 1.6891 -0.2313 2.8316 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.1329 -2.2662 0.2942 36 1 3.7767 -3.1611 2.5914 37 1 2.0244 0.8797 5.0205 38 1 0.5695 -0.1552 4.9864 39 1 -1.1089 0.5383 7.0802 40 1 -3.8953 2.3396 6.7364 41 1 0.2765 -1.1558 7.8300 42 1 1.3305 -0.1802 8.9079 43 1 3.2514 -3.1882 7.2030 44 1 2.4615 -2.8017 8.7507 45 1 1.4750 -3.1567 7.3122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989839415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:43 Heat of formation + Delta-G solvation = -15.327705 kcal Electronic energy + Delta-G solvation = -25410.545298 eV Core-core repulsion = 21939.831827 eV Total energy + Delta-G solvation = -3470.713471 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32163 -39.44227 -38.46845 -36.07265 -35.91929 -33.35264 -33.07305 -30.16331 -29.79869 -28.07840 -26.86433 -26.17638 -25.56947 -23.45491 -22.21019 -21.98230 -21.08242 -19.55052 -19.26486 -18.54633 -17.64382 -16.93939 -16.76995 -16.31601 -15.82130 -15.43099 -15.38176 -15.33501 -14.90938 -14.62017 -14.59162 -14.36408 -13.99649 -13.67973 -13.49752 -13.34086 -13.19795 -13.12134 -12.94375 -12.88664 -12.78121 -12.48238 -12.25829 -12.21722 -12.13541 -12.09416 -12.05138 -11.74649 -11.57262 -11.38962 -10.97190 -10.77657 -9.92054 -9.57999 -9.42844 -9.07319 -7.92933 -5.23510 -0.46896 0.52832 1.03784 1.38989 1.51852 1.53086 1.59087 1.88185 2.15491 2.58048 3.35916 3.38461 3.61101 3.79442 3.83966 3.89136 3.96205 4.15208 4.18340 4.25045 4.33799 4.44118 4.47086 4.48862 4.62037 4.69781 4.70305 4.72063 4.81281 4.82134 4.92226 5.01211 5.06422 5.08579 5.11356 5.19051 5.25678 5.29403 5.30110 5.34059 5.45674 5.51973 5.55837 6.26714 6.40419 7.01792 7.35168 8.04725 8.29666 9.29646 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.005380 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.861400 B = 5202.818557 C = 7889.023281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.200 4.200 5 C -0.160 4.160 6 C -0.051 4.051 7 C -0.304 4.304 8 C 0.598 3.402 9 O -0.566 6.566 10 N -0.607 5.607 11 C 0.074 3.926 12 C 0.171 3.829 13 H 0.078 0.922 14 N -0.721 5.721 15 C -0.244 4.244 16 H 0.082 0.918 17 C -0.066 4.066 18 N -0.966 5.966 19 Si 0.966 3.034 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.277 1.277 23 C -0.125 4.125 24 C 0.136 3.864 25 H 0.091 0.909 26 C -0.155 4.155 27 S 0.224 5.776 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -5.202 -11.032 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.046 4.046 3 C -0.207 4.207 4 C -0.319 4.319 5 C -0.189 4.189 6 C -0.086 4.086 7 C -0.424 4.424 8 C 0.389 3.611 9 O -0.448 6.448 10 N -0.340 5.340 11 C -0.054 4.054 12 C 0.060 3.940 13 H 0.096 0.904 14 N -0.360 5.360 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.258 4.258 18 N -0.616 5.616 19 Si 0.795 3.205 20 H -0.202 1.202 21 H -0.226 1.226 22 H -0.204 1.204 23 C -0.164 4.164 24 C 0.034 3.966 25 H 0.109 0.891 26 C -0.212 4.212 27 S 0.494 5.506 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.307 -4.338 -10.293 15.893 hybrid contribution -0.090 -0.573 -0.753 0.950 sum 11.216 -4.911 -11.045 16.490 Atomic orbital electron populations 1.21968 0.93899 1.02384 1.02627 1.19869 0.95839 0.95934 0.92909 1.21953 1.01651 0.94359 1.02708 1.25092 1.03389 1.01530 1.01924 1.20132 1.02160 0.97653 0.98972 1.20883 0.97772 0.99274 0.90651 1.24609 1.13943 1.06947 0.96931 1.16878 0.78837 0.81422 0.83977 1.90699 1.41999 1.30476 1.81660 1.48497 1.49911 1.28283 1.07294 1.23157 0.93813 0.86535 1.01856 1.21320 0.86684 0.95094 0.90884 0.90391 1.42499 1.01749 1.09730 1.81991 1.19595 0.91935 0.88235 1.37785 0.90043 1.25481 0.95772 1.01448 1.03143 1.69798 0.98893 1.35903 1.57010 0.85337 0.76190 0.80534 0.78469 1.20214 1.22600 1.20355 1.23106 0.96770 0.96319 1.00202 1.22035 0.98816 0.97535 0.78190 0.89098 1.22076 1.02431 0.94134 1.02572 1.84122 1.45537 1.25584 0.95327 0.93929 0.89932 0.92330 0.87291 0.93662 0.91883 0.90025 0.81522 0.82828 0.91183 0.91930 0.79128 0.94016 0.91453 0.87877 0.91216 0.89556 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.08 71.98 0.65 -2.20 16 2 C -0.03 -0.46 3.25 -11.54 -0.04 -0.49 16 3 C -0.15 -2.55 9.08 71.98 0.65 -1.90 16 4 C -0.20 -4.58 4.95 24.68 0.12 -4.46 16 5 C -0.16 -3.48 9.95 21.08 0.21 -3.27 16 6 C -0.05 -1.36 10.01 21.72 0.22 -1.14 16 7 C -0.30 -9.46 6.38 24.08 0.15 -9.31 16 8 C 0.60 20.86 7.60 86.42 0.66 21.52 16 9 O -0.57 -21.56 14.49 -4.38 -0.06 -21.63 16 10 N -0.61 -20.02 3.24 -792.91 -2.57 -22.59 16 11 C 0.07 2.54 4.93 86.74 0.43 2.97 16 12 C 0.17 6.17 3.61 46.19 0.17 6.34 16 13 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 14 N -0.72 -33.37 5.15 -317.30 -1.64 -35.01 16 15 C -0.24 -12.46 9.96 84.03 0.84 -11.62 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 17 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 18 N -0.97 -56.33 13.06 21.65 0.28 -56.04 16 19 Si 0.97 43.56 29.55 68.60 2.03 45.59 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 C -0.13 -3.78 6.13 31.98 0.20 -3.58 16 24 C 0.14 3.95 3.76 45.46 0.17 4.12 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 C -0.15 -4.29 8.71 71.98 0.63 -3.67 16 27 S 0.22 6.39 17.64 -56.49 -1.00 5.40 16 28 H 0.04 0.97 7.90 -2.39 -0.02 0.95 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 32 H 0.04 0.92 7.90 -2.39 -0.02 0.90 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.15 3.78 8.06 -2.92 -0.02 3.76 16 37 H 0.07 2.33 7.01 -2.39 -0.02 2.31 16 38 H 0.06 2.41 6.69 -2.39 -0.02 2.39 16 39 H 0.38 19.03 7.76 -92.71 -0.72 18.31 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.07 2.20 7.92 -2.39 -0.02 2.18 16 42 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.07 2.18 5.88 -2.39 -0.01 2.17 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -62.92 371.98 2.83 -60.09 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.26 Total: 33.95 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.52 Total: -9.76 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.92 Total: -113.64 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -1.00 Total: 5.40 kcal Total: -62.92 2.83 -60.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989839415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.761 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds