Wall clock time and date at job start Tue Mar 31 2020 13:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46893 * 2 1 4 4 H 1.09007 * 109.52248 * 304.91209 * 3 2 1 5 5 C 1.53191 * 109.50135 * 64.99766 * 3 2 1 6 6 N 1.46927 * 108.77374 * 174.58424 * 5 3 2 7 7 C 1.34780 * 120.62753 * 126.37299 * 6 5 3 8 8 O 1.21707 * 119.99857 * 354.34866 * 7 6 5 9 9 C 1.46581 * 120.00068 * 174.35031 * 7 6 5 10 10 S 1.75830 * 125.45819 * 319.29428 * 9 7 6 11 11 C 1.70615 * 91.56195 * 179.97438 * 10 9 7 12 12 C 1.33817 * 110.95409 * 0.30828 * 11 10 9 13 13 C 1.36648 * 125.45781 * 139.59695 * 9 7 6 14 14 C 1.50695 * 123.35006 * 359.94331 * 13 9 7 15 15 C 1.46922 * 118.73946 * 306.39260 * 6 5 3 16 16 C 1.53188 * 108.77624 * 53.61302 * 15 6 5 17 17 C 1.53042 * 109.31118 * 305.35857 * 16 15 6 18 18 H 1.09004 * 109.46119 * 181.38402 * 17 16 15 19 19 N 1.46497 * 109.46152 * 301.36287 * 17 16 15 20 20 C 1.36936 * 119.99732 * 274.99684 * 19 17 16 21 21 H 1.08001 * 120.00224 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99957 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99917 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46853 * 90.00433 * 24 22 20 26 26 H 1.48504 * 109.47169 * 209.99822 * 24 22 20 27 27 H 1.48493 * 109.47621 * 330.00322 * 24 22 20 28 28 H 1.09002 * 109.47362 * 300.00362 * 1 2 3 29 29 H 1.08998 * 109.47607 * 60.00066 * 1 2 3 30 30 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47024 * 239.99753 * 2 1 3 32 32 H 1.08996 * 109.47174 * 119.99645 * 2 1 3 33 33 H 1.08999 * 109.58312 * 54.80237 * 5 3 2 34 34 H 1.09000 * 109.58742 * 294.37756 * 5 3 2 35 35 H 1.07999 * 124.51927 * 180.02562 * 11 10 9 36 36 H 1.08003 * 122.44592 * 179.73976 * 12 11 10 37 37 H 1.09003 * 109.47504 * 90.00431 * 14 13 9 38 38 H 1.09006 * 109.47109 * 209.99642 * 14 13 9 39 39 H 1.09001 * 109.47624 * 330.00119 * 14 13 9 40 40 H 1.09011 * 109.58102 * 173.39763 * 15 6 5 41 41 H 1.08998 * 109.59000 * 293.67725 * 15 6 5 42 42 H 1.08998 * 109.50238 * 65.31232 * 16 15 6 43 43 H 1.08996 * 109.49938 * 185.41175 * 16 15 6 44 44 H 0.97002 * 119.99937 * 95.00210 * 19 17 16 45 45 H 0.97006 * 119.99654 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6070 1.9820 -0.8425 5 6 1.6349 2.1281 1.3087 6 7 2.2414 3.4658 1.3492 7 6 1.4814 4.5581 1.5627 8 8 0.2702 4.4547 1.6215 9 6 2.1135 5.8708 1.7239 10 16 3.5876 6.1889 2.6281 11 6 3.5117 7.8524 2.2570 12 6 2.4372 8.1272 1.5082 13 6 1.6485 7.0442 1.2004 14 6 0.3957 7.1414 0.3686 15 6 3.6921 3.5899 1.1521 16 6 4.0740 2.8881 -0.1549 17 6 3.5655 1.4450 -0.1217 18 1 3.8573 0.9359 -1.0403 19 7 4.1477 0.7487 1.0283 20 6 5.3852 0.1717 0.9246 21 1 5.9319 0.2296 -0.0050 22 6 5.9367 -0.4885 2.0141 23 7 5.2698 -0.5603 3.1466 24 14 7.6245 -1.2762 1.8725 25 1 8.6651 -0.2898 2.2590 26 1 7.6988 -2.4532 2.7750 27 1 7.8516 -1.7118 0.4712 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9907 1.5399 2.1546 34 1 0.5495 2.2174 1.3538 35 1 4.2321 8.5865 2.5866 36 1 2.2066 9.1268 1.1704 37 1 -0.4592 7.3256 1.0193 38 1 0.4944 7.9617 -0.3425 39 1 0.2456 6.2073 -0.1728 40 1 3.9640 4.6440 1.0938 41 1 4.2155 3.1232 1.9864 42 1 3.6218 3.4138 -0.9959 43 1 5.1583 2.8892 -0.2651 44 1 3.6565 0.6964 1.8631 45 1 5.6550 -1.0220 3.9078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037757752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:29 Heat of formation + Delta-G solvation = 1.968772 kcal Electronic energy + Delta-G solvation = -26103.868690 eV Core-core repulsion = 22633.905251 eV Total energy + Delta-G solvation = -3469.963439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15309 -38.45517 -37.28476 -34.44058 -33.75032 -31.70161 -31.02793 -29.50112 -29.06200 -27.73992 -25.01658 -23.85263 -23.57681 -23.30672 -20.99763 -20.66518 -18.75769 -18.28040 -17.56528 -17.31576 -16.14232 -15.74984 -15.22038 -14.85254 -14.67941 -14.18230 -14.01222 -13.82752 -13.52806 -13.37741 -13.24931 -13.07463 -12.77719 -12.53753 -12.44909 -12.24404 -12.12961 -11.85471 -11.59821 -11.40578 -11.09382 -11.01253 -10.88605 -10.78268 -10.69629 -10.29490 -10.25799 -10.17418 -9.79237 -9.71977 -9.55216 -8.94668 -8.79383 -8.34340 -8.21751 -6.98294 -5.79858 -3.08194 0.59170 1.43749 1.90261 2.40197 3.10940 3.36692 3.40663 3.46882 3.48078 4.56690 4.67661 4.79720 5.12341 5.16665 5.23191 5.28993 5.34926 5.43241 5.51851 5.55411 5.58684 5.64649 5.70344 5.81669 5.82203 5.87499 5.89567 5.92433 6.08711 6.15615 6.18980 6.28223 6.35328 6.35549 6.39582 6.42052 6.57141 6.64174 6.71129 6.77327 6.94223 7.00649 7.66939 7.68092 8.33100 8.38566 9.50357 10.06842 10.42164 11.42522 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004454 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.180294 B = 6285.019313 C = 7772.760137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.588 3.412 8 O -0.539 6.539 9 C -0.262 4.262 10 S 0.228 5.772 11 C -0.250 4.250 12 C -0.146 4.146 13 C -0.041 4.041 14 C -0.092 4.092 15 C 0.104 3.896 16 C -0.147 4.147 17 C 0.178 3.822 18 H 0.052 0.948 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.166 0.834 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 14.588 -4.715 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.375 3.625 8 O -0.418 6.418 9 C -0.382 4.382 10 S 0.497 5.503 11 C -0.387 4.387 12 C -0.178 4.178 13 C -0.055 4.055 14 C -0.151 4.151 15 C -0.019 4.019 16 C -0.188 4.188 17 C 0.068 3.932 18 H 0.070 0.930 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.209 1.209 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.774 13.534 -3.856 15.211 hybrid contribution 0.183 0.643 -0.489 0.828 sum -5.591 14.177 -4.344 15.847 Atomic orbital electron populations 1.21852 0.96805 1.01021 1.01370 1.21414 0.94279 0.95681 1.03396 1.21750 0.97387 0.96149 0.96988 0.91521 1.21735 0.98841 0.81106 0.98513 1.48012 1.08798 1.06366 1.69426 1.16971 0.86189 0.82385 0.76987 1.90778 1.13247 1.85570 1.52245 1.24483 1.03350 0.98027 1.12381 1.83566 1.19711 0.98897 1.48095 1.25387 1.04067 1.02685 1.06562 1.19815 0.95602 0.99961 1.02375 1.19379 0.97571 0.90443 0.98128 1.20494 0.93537 1.02748 0.98290 1.22016 0.79029 1.00485 1.00398 1.22500 1.01848 0.99197 0.95264 1.20232 0.89759 0.90584 0.92650 0.93031 1.42474 1.19080 1.63978 1.10538 1.19215 0.93588 1.26955 0.97070 0.91264 1.24689 0.98485 1.01459 0.96033 1.69649 1.38007 1.48103 1.02269 0.86252 0.84462 0.78777 0.77044 1.21844 1.21910 1.20868 0.92789 0.93370 0.93166 0.92004 0.90461 0.90539 0.89409 0.81668 0.84202 0.90506 0.91636 0.91037 0.90886 0.89436 0.93285 0.90617 0.78106 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 3 C -0.10 -1.68 2.14 -90.50 -0.19 -1.87 16 4 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 5 C 0.12 2.05 5.04 -3.71 -0.02 2.03 16 6 N -0.59 -10.02 2.97 -174.35 -0.52 -10.53 16 7 C 0.59 10.07 7.08 -12.89 -0.09 9.98 16 8 O -0.54 -10.38 15.35 5.18 0.08 -10.30 16 9 C -0.26 -3.86 5.40 -36.79 -0.20 -4.06 16 10 S 0.23 2.84 20.05 -107.50 -2.16 0.69 16 11 C -0.25 -2.58 10.92 29.18 0.32 -2.26 16 12 C -0.15 -1.57 9.97 -41.42 -0.41 -1.98 16 13 C -0.04 -0.52 5.90 -105.48 -0.62 -1.15 16 14 C -0.09 -1.06 9.47 36.00 0.34 -0.72 16 15 C 0.10 1.71 5.37 -3.72 -0.02 1.69 16 16 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16 17 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 19 N -0.72 -16.24 3.72 -53.38 -0.20 -16.44 16 20 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 24 Si 0.90 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 33 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 34 H 0.09 1.50 5.71 -51.93 -0.30 1.20 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.94 7.24 -51.93 -0.38 0.56 16 40 H 0.07 1.08 4.52 -37.22 -0.17 0.91 16 41 H 0.09 1.66 7.74 -51.93 -0.40 1.26 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.38 9.32 5.94 -40.82 -0.24 9.08 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -29.29 363.58 -9.63 -38.92 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.77 Total: 9.71 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.25 Total: -8.06 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.01 Total: -52.97 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.16 Total: 0.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.29 -9.63 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037757752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.892 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds