Wall clock time and date at job start Tue Mar 31 2020 13:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46893 * 2 1 4 4 H 1.09007 * 109.52248 * 304.91209 * 3 2 1 5 5 C 1.53191 * 109.50135 * 64.99766 * 3 2 1 6 6 N 1.46927 * 108.77374 * 174.58424 * 5 3 2 7 7 C 1.34780 * 120.62753 * 126.37299 * 6 5 3 8 8 O 1.21707 * 119.99857 * 354.34866 * 7 6 5 9 9 C 1.46581 * 120.00068 * 174.35031 * 7 6 5 10 10 S 1.75830 * 125.45819 * 319.29428 * 9 7 6 11 11 C 1.70615 * 91.56195 * 179.97438 * 10 9 7 12 12 C 1.33817 * 110.95409 * 0.30828 * 11 10 9 13 13 C 1.36648 * 125.45781 * 139.59695 * 9 7 6 14 14 C 1.50695 * 123.35006 * 359.94331 * 13 9 7 15 15 C 1.46922 * 118.73946 * 306.39260 * 6 5 3 16 16 C 1.53188 * 108.77624 * 53.61302 * 15 6 5 17 17 C 1.53042 * 109.31118 * 305.35857 * 16 15 6 18 18 H 1.09004 * 109.46119 * 181.38402 * 17 16 15 19 19 N 1.46497 * 109.46152 * 301.36287 * 17 16 15 20 20 C 1.36936 * 119.99732 * 274.99684 * 19 17 16 21 21 H 1.08001 * 120.00224 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99957 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99917 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46853 * 90.00433 * 24 22 20 26 26 H 1.48504 * 109.47169 * 209.99822 * 24 22 20 27 27 H 1.48493 * 109.47621 * 330.00322 * 24 22 20 28 28 H 1.09002 * 109.47362 * 300.00362 * 1 2 3 29 29 H 1.08998 * 109.47607 * 60.00066 * 1 2 3 30 30 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47024 * 239.99753 * 2 1 3 32 32 H 1.08996 * 109.47174 * 119.99645 * 2 1 3 33 33 H 1.08999 * 109.58312 * 54.80237 * 5 3 2 34 34 H 1.09000 * 109.58742 * 294.37756 * 5 3 2 35 35 H 1.07999 * 124.51927 * 180.02562 * 11 10 9 36 36 H 1.08003 * 122.44592 * 179.73976 * 12 11 10 37 37 H 1.09003 * 109.47504 * 90.00431 * 14 13 9 38 38 H 1.09006 * 109.47109 * 209.99642 * 14 13 9 39 39 H 1.09001 * 109.47624 * 330.00119 * 14 13 9 40 40 H 1.09011 * 109.58102 * 173.39763 * 15 6 5 41 41 H 1.08998 * 109.59000 * 293.67725 * 15 6 5 42 42 H 1.08998 * 109.50238 * 65.31232 * 16 15 6 43 43 H 1.08996 * 109.49938 * 185.41175 * 16 15 6 44 44 H 0.97002 * 119.99937 * 95.00210 * 19 17 16 45 45 H 0.97006 * 119.99654 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6070 1.9820 -0.8425 5 6 1.6349 2.1281 1.3087 6 7 2.2414 3.4658 1.3492 7 6 1.4814 4.5581 1.5627 8 8 0.2702 4.4547 1.6215 9 6 2.1135 5.8708 1.7239 10 16 3.5876 6.1889 2.6281 11 6 3.5117 7.8524 2.2570 12 6 2.4372 8.1272 1.5082 13 6 1.6485 7.0442 1.2004 14 6 0.3957 7.1414 0.3686 15 6 3.6921 3.5899 1.1521 16 6 4.0740 2.8881 -0.1549 17 6 3.5655 1.4450 -0.1217 18 1 3.8573 0.9359 -1.0403 19 7 4.1477 0.7487 1.0283 20 6 5.3852 0.1717 0.9246 21 1 5.9319 0.2296 -0.0050 22 6 5.9367 -0.4885 2.0141 23 7 5.2698 -0.5603 3.1466 24 14 7.6245 -1.2762 1.8725 25 1 8.6651 -0.2898 2.2590 26 1 7.6988 -2.4532 2.7750 27 1 7.8516 -1.7118 0.4712 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9907 1.5399 2.1546 34 1 0.5495 2.2174 1.3538 35 1 4.2321 8.5865 2.5866 36 1 2.2066 9.1268 1.1704 37 1 -0.4592 7.3256 1.0193 38 1 0.4944 7.9617 -0.3425 39 1 0.2456 6.2073 -0.1728 40 1 3.9640 4.6440 1.0938 41 1 4.2155 3.1232 1.9864 42 1 3.6218 3.4138 -0.9959 43 1 5.1583 2.8892 -0.2651 44 1 3.6565 0.6964 1.8631 45 1 5.6550 -1.0220 3.9078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037757752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:28 Heat of formation + Delta-G solvation = -13.639072 kcal Electronic energy + Delta-G solvation = -26104.545497 eV Core-core repulsion = 22633.905251 eV Total energy + Delta-G solvation = -3470.640246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48434 -39.64849 -38.48762 -35.92078 -35.36225 -33.41844 -31.95804 -31.04000 -30.42531 -28.94888 -26.42747 -25.42915 -25.11479 -24.31416 -22.30310 -21.89294 -20.15614 -19.40956 -19.12757 -18.85305 -17.41648 -16.88415 -16.67237 -16.27718 -16.00909 -15.69879 -15.56027 -15.02113 -14.81117 -14.69908 -14.52421 -14.34435 -14.06898 -13.86382 -13.72059 -13.36886 -13.14170 -13.00576 -12.86391 -12.83391 -12.65296 -12.64169 -12.38464 -12.17120 -12.07380 -11.86606 -11.73883 -11.57461 -11.45101 -11.14462 -11.06711 -10.81317 -9.84359 -9.57490 -9.31809 -8.90392 -7.86712 -5.12986 -0.38709 0.44624 0.99772 1.46077 1.50820 1.51541 1.59124 1.86407 2.09697 2.61309 3.46226 3.48515 3.80493 3.85898 3.97820 4.00665 4.06820 4.22580 4.27088 4.33739 4.38735 4.44512 4.46494 4.57582 4.63457 4.67700 4.77230 4.81195 4.86108 4.98761 5.01494 5.03056 5.06457 5.15690 5.20810 5.23077 5.26666 5.38837 5.41611 5.47669 5.51432 5.61112 5.64790 6.34256 6.34828 7.00818 7.42556 8.17783 8.42185 9.36541 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004454 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.180294 B = 6285.019313 C = 7772.760137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.126 3.874 6 N -0.597 5.597 7 C 0.587 3.413 8 O -0.568 6.568 9 C -0.304 4.304 10 S 0.206 5.794 11 C -0.225 4.225 12 C -0.151 4.151 13 C -0.032 4.032 14 C -0.092 4.092 15 C 0.113 3.887 16 C -0.140 4.140 17 C 0.173 3.827 18 H 0.050 0.950 19 N -0.723 5.723 20 C -0.226 4.226 21 H 0.075 0.925 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.962 3.038 25 H -0.290 1.290 26 H -0.303 1.303 27 H -0.272 1.272 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.199 0.801 36 H 0.174 0.826 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 17.134 -6.410 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.328 5.328 7 C 0.376 3.624 8 O -0.450 6.450 9 C -0.424 4.424 10 S 0.475 5.525 11 C -0.362 4.362 12 C -0.181 4.181 13 C -0.048 4.048 14 C -0.151 4.151 15 C -0.010 4.010 16 C -0.181 4.181 17 C 0.064 3.936 18 H 0.068 0.932 19 N -0.364 5.364 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.793 3.207 25 H -0.218 1.218 26 H -0.230 1.230 27 H -0.197 1.197 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.216 0.784 36 H 0.191 0.809 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.548 16.103 -5.603 17.930 hybrid contribution 0.066 -0.024 -0.003 0.070 sum -5.483 16.079 -5.606 17.889 Atomic orbital electron populations 1.21784 0.94738 1.01955 1.01847 1.21334 0.96072 0.94970 1.01889 1.21656 0.95852 0.96566 0.97021 0.89823 1.21582 0.98724 0.81347 0.98008 1.48035 1.08883 1.06295 1.69540 1.17332 0.85899 0.83200 0.75969 1.90743 1.14476 1.86215 1.53563 1.24333 1.05309 0.97358 1.15406 1.83656 1.19060 1.01357 1.48422 1.25776 1.04148 1.01516 1.04760 1.20108 0.95084 1.00702 1.02224 1.19778 0.97689 0.90441 0.96898 1.20540 0.93041 1.02880 0.98600 1.21893 0.78590 1.01471 0.99031 1.22390 1.01582 0.97911 0.96191 1.20438 0.91051 0.91182 0.90911 0.93155 1.42572 1.18317 1.64228 1.11322 1.19563 0.94262 1.25195 0.96790 0.90662 1.25355 1.01682 1.03164 0.96076 1.69806 1.39485 1.49807 1.02869 0.85301 0.80921 0.77416 0.77079 1.21766 1.23033 1.19699 0.93275 0.91844 0.92072 0.91768 0.93595 0.93050 0.89380 0.78375 0.80905 0.90458 0.88541 0.93083 0.88782 0.92451 0.90988 0.91121 0.79321 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.67 71.98 0.70 -3.16 16 2 C -0.10 -3.34 5.19 30.59 0.16 -3.18 16 3 C -0.09 -2.96 2.14 -10.71 -0.02 -2.99 16 4 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 5 C 0.13 4.42 5.04 86.36 0.43 4.86 16 6 N -0.60 -20.40 2.97 -823.72 -2.45 -22.85 16 7 C 0.59 20.26 7.08 86.42 0.61 20.87 16 8 O -0.57 -22.22 15.35 -4.37 -0.07 -22.29 16 9 C -0.30 -8.71 5.40 24.08 0.13 -8.58 16 10 S 0.21 4.88 20.05 -56.49 -1.13 3.75 16 11 C -0.22 -3.85 10.92 66.81 0.73 -3.12 16 12 C -0.15 -2.66 9.97 21.08 0.21 -2.45 16 13 C -0.03 -0.76 5.90 -20.42 -0.12 -0.88 16 14 C -0.09 -1.93 9.47 71.23 0.67 -1.25 16 15 C 0.11 3.75 5.37 86.36 0.46 4.21 16 16 C -0.14 -4.57 5.78 30.67 0.18 -4.39 16 17 C 0.17 6.36 2.53 45.02 0.11 6.48 16 18 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 19 N -0.72 -33.48 3.72 -322.80 -1.20 -34.68 16 20 C -0.23 -11.71 9.93 84.03 0.83 -10.88 16 21 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 23 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 24 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H 0.05 1.34 6.70 -2.39 -0.02 1.32 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.76 7.69 -2.39 -0.02 1.74 16 33 H 0.05 2.06 6.64 -2.39 -0.02 2.04 16 34 H 0.09 3.09 5.71 -2.39 -0.01 3.07 16 35 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 36 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.05 1.29 7.24 -2.39 -0.02 1.27 16 40 H 0.09 2.73 4.52 -11.73 -0.05 2.68 16 41 H 0.06 2.26 7.74 -2.39 -0.02 2.24 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.37 18.98 5.94 -92.71 -0.55 18.43 16 45 H 0.25 14.44 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -64.70 363.58 3.42 -61.28 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.40 Total: 32.85 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.56 Total: -7.87 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.37 Total: -114.66 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.07 Total: -22.29 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.13 Total: 3.75 kcal Total: -64.70 3.42 -61.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037757752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.638 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds