Wall clock time and date at job start Tue Mar 31 2020 13:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46713 * 2 1 4 4 H 1.09002 * 109.49674 * 304.93726 * 3 2 1 5 5 C 1.53187 * 109.50069 * 64.99808 * 3 2 1 6 6 N 1.46923 * 108.77984 * 174.58710 * 5 3 2 7 7 C 1.34772 * 120.63517 * 126.41632 * 6 5 3 8 8 O 1.21704 * 119.99651 * 354.35540 * 7 6 5 9 9 C 1.46576 * 120.00490 * 174.35934 * 7 6 5 10 10 S 1.75837 * 125.45806 * 318.79141 * 9 7 6 11 11 C 1.70610 * 91.56462 * 179.97438 * 10 9 7 12 12 C 1.33818 * 110.95574 * 359.97438 * 11 10 9 13 13 C 1.36652 * 125.46187 * 138.48223 * 9 7 6 14 14 C 1.50698 * 123.34934 * 0.02562 * 13 9 7 15 15 C 1.46934 * 118.73775 * 306.39491 * 6 5 3 16 16 C 1.53197 * 108.77291 * 53.60612 * 15 6 5 17 17 C 1.53035 * 109.31242 * 305.36363 * 16 15 6 18 18 H 1.08995 * 109.46541 * 301.34748 * 17 16 15 19 19 N 1.46509 * 109.45860 * 181.38593 * 17 16 15 20 20 C 1.36938 * 119.99786 * 84.93561 * 19 17 16 21 21 H 1.07997 * 119.99627 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99741 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99680 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00046 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47452 * 90.00198 * 24 22 20 26 26 H 1.48508 * 109.47146 * 210.00305 * 24 22 20 27 27 H 1.48506 * 109.47133 * 329.99950 * 24 22 20 28 28 H 1.09008 * 109.46843 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47471 * 60.00505 * 1 2 3 30 30 H 1.09002 * 109.47360 * 299.99520 * 1 2 3 31 31 H 1.08992 * 109.47471 * 119.99495 * 2 1 3 32 32 H 1.09002 * 109.47360 * 240.00480 * 2 1 3 33 33 H 1.08997 * 109.58937 * 294.37744 * 5 3 2 34 34 H 1.09005 * 109.58237 * 54.65818 * 5 3 2 35 35 H 1.07998 * 124.52669 * 180.02562 * 11 10 9 36 36 H 1.07997 * 122.45067 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47266 * 89.99636 * 14 13 9 38 38 H 1.08995 * 109.47290 * 209.99987 * 14 13 9 39 39 H 1.09008 * 109.47282 * 329.99702 * 14 13 9 40 40 H 1.08998 * 109.58508 * 173.39351 * 15 6 5 41 41 H 1.08999 * 109.58439 * 293.82307 * 15 6 5 42 42 H 1.08998 * 109.49787 * 65.31708 * 16 15 6 43 43 H 1.08999 * 109.49697 * 185.37882 * 16 15 6 44 44 H 0.96998 * 119.99664 * 264.93329 * 19 17 16 45 45 H 0.97006 * 119.99552 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6349 2.1281 1.3087 6 7 2.2412 3.4658 1.3493 7 6 1.4814 4.5580 1.5637 8 8 0.2702 4.4544 1.6235 9 6 2.1135 5.8706 1.7247 10 16 3.5815 6.1906 2.6382 11 6 3.5097 7.8529 2.2609 12 6 2.4447 8.1249 1.4976 13 6 1.6597 7.0408 1.1842 14 6 0.4201 7.1340 0.3323 15 6 3.6920 3.5901 1.1521 16 6 4.0739 2.8882 -0.1549 17 6 3.5655 1.4451 -0.1217 18 1 3.9988 0.9270 0.7337 19 7 3.9577 0.7610 -1.3565 20 6 5.1962 0.1852 -1.4564 21 1 5.8838 0.2358 -0.6251 22 6 5.5680 -0.4626 -2.6264 23 7 6.7585 -1.0155 -2.7226 24 14 4.3788 -0.5495 -4.0643 25 1 4.5810 0.6283 -4.9458 26 1 4.6256 -1.7938 -4.8364 27 1 2.9842 -0.5522 -3.5539 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5137 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 0.5496 2.2174 1.3538 34 1 1.9885 1.5385 2.1546 35 1 4.2283 8.5876 2.5930 36 1 2.2205 9.1225 1.1499 37 1 -0.4442 7.3259 0.9682 38 1 0.5319 7.9478 -0.3841 39 1 0.2759 6.1957 -0.2034 40 1 3.9638 4.6441 1.0939 41 1 4.2154 3.1210 1.9852 42 1 3.6216 3.4140 -0.9958 43 1 5.1582 2.8900 -0.2655 44 1 3.3402 0.7159 -2.1031 45 1 7.0182 -1.4685 -3.5402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037757753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:36 Heat of formation + Delta-G solvation = 3.910197 kcal Electronic energy + Delta-G solvation = -25776.564277 eV Core-core repulsion = 22306.685024 eV Total energy + Delta-G solvation = -3469.879253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32768 -38.55728 -37.44597 -34.87622 -33.91736 -31.80610 -31.17571 -29.93660 -29.50349 -27.93339 -25.20376 -24.03094 -23.62268 -22.52690 -20.95843 -20.80824 -19.74975 -18.43312 -18.04632 -17.47416 -16.34800 -15.94458 -15.42925 -15.02425 -14.81142 -14.32205 -14.06751 -13.80820 -13.74873 -13.50512 -13.28820 -13.25407 -12.82862 -12.75080 -12.52566 -12.42497 -12.26951 -12.02268 -11.84907 -11.73698 -11.43035 -11.13290 -11.04194 -10.96433 -10.80109 -10.43502 -10.33814 -10.22245 -9.95239 -9.76410 -9.59691 -8.98937 -8.94033 -8.54531 -8.50508 -7.29244 -5.80102 -3.15433 0.43148 1.25911 1.71868 2.26398 2.85195 3.15204 3.35198 3.38705 3.43860 4.46801 4.56507 4.66755 4.92864 5.02071 5.04582 5.09097 5.16218 5.21633 5.31150 5.36310 5.46733 5.51103 5.55023 5.57255 5.59660 5.74446 5.76618 5.79141 5.91241 5.99335 6.02417 6.08399 6.15292 6.21922 6.24750 6.27321 6.33001 6.45321 6.54296 6.69840 6.78637 6.93020 7.38990 7.95648 8.10445 8.39094 9.17365 9.90223 10.10220 11.38209 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.003816 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.067567 B = 7335.452667 C = 8143.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.601 5.601 7 C 0.591 3.409 8 O -0.533 6.533 9 C -0.265 4.265 10 S 0.216 5.784 11 C -0.243 4.243 12 C -0.145 4.145 13 C -0.035 4.035 14 C -0.095 4.095 15 C 0.096 3.904 16 C -0.148 4.148 17 C 0.188 3.812 18 H 0.057 0.943 19 N -0.745 5.745 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.276 1.276 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 16.031 10.971 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.333 5.333 7 C 0.378 3.622 8 O -0.412 6.412 9 C -0.385 4.385 10 S 0.485 5.515 11 C -0.380 4.380 12 C -0.176 4.176 13 C -0.050 4.050 14 C -0.153 4.153 15 C -0.028 4.028 16 C -0.190 4.190 17 C 0.079 3.921 18 H 0.075 0.925 19 N -0.386 5.386 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.185 0.815 36 H 0.160 0.840 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.007 14.965 11.912 21.142 hybrid contribution -1.385 1.006 -2.011 2.641 sum -10.393 15.971 9.901 21.473 Atomic orbital electron populations 1.21853 0.96613 1.01172 1.01455 1.21466 0.94561 0.95626 1.03469 1.21830 0.97624 0.96310 0.97061 0.91206 1.21759 0.99567 0.80985 0.97799 1.48044 1.08669 1.06522 1.70053 1.16970 0.86173 0.82354 0.76684 1.90795 1.13222 1.85478 1.51709 1.24415 1.03567 0.97988 1.12548 1.83262 1.20280 0.99638 1.48368 1.25351 1.04068 1.02310 1.06302 1.19859 0.95722 1.00105 1.01916 1.19417 0.97527 0.90457 0.97564 1.20524 0.93664 1.02999 0.98130 1.22174 0.79223 1.01804 0.99608 1.22621 1.02687 0.98632 0.95012 1.20165 0.90655 0.90611 0.90716 0.92453 1.42772 1.16515 1.66234 1.13114 1.19051 0.90393 1.27305 1.00458 0.89179 1.24641 0.96379 1.00246 0.97645 1.69696 1.19234 1.41584 1.27603 0.86608 0.81165 0.77325 0.83751 1.21189 1.21788 1.20260 0.93042 0.93082 0.92928 0.91906 0.90396 0.88890 0.91227 0.81514 0.83992 0.90378 0.91409 0.90986 0.89980 0.90952 0.92240 0.89899 0.80602 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.85 16 3 C -0.11 -1.67 1.92 -90.50 -0.17 -1.84 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.69 5.33 -3.72 -0.02 1.67 16 6 N -0.60 -8.46 2.97 -174.35 -0.52 -8.98 16 7 C 0.59 8.84 7.05 -12.90 -0.09 8.75 16 8 O -0.53 -9.25 15.42 5.19 0.08 -9.17 16 9 C -0.27 -3.40 5.38 -36.79 -0.20 -3.60 16 10 S 0.22 2.14 20.09 -107.50 -2.16 -0.02 16 11 C -0.24 -2.12 10.92 29.18 0.32 -1.80 16 12 C -0.14 -1.37 9.97 -41.41 -0.41 -1.79 16 13 C -0.03 -0.41 5.90 -105.48 -0.62 -1.03 16 14 C -0.09 -1.01 9.49 36.00 0.34 -0.67 16 15 C 0.10 1.26 5.63 -3.70 -0.02 1.24 16 16 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 17 C 0.19 3.37 2.19 -67.89 -0.15 3.22 16 18 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 19 N -0.74 -16.58 4.14 -53.38 -0.22 -16.80 16 20 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 24 Si 0.88 21.71 27.73 -169.99 -4.71 16.99 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 33 H 0.09 1.34 5.71 -51.93 -0.30 1.04 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.90 7.27 -51.92 -0.38 0.52 16 40 H 0.08 1.00 4.55 -38.01 -0.17 0.82 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.36 8.10 5.37 -40.82 -0.22 7.88 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -31.51 364.21 -9.36 -40.86 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.87 Total: 7.91 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.21 Total: -8.42 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.04 Total: -53.65 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.16 Total: -0.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.51 -9.36 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037757753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.772 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds