Wall clock time and date at job start Tue Mar 31 2020 13:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46713 * 2 1 4 4 H 1.09002 * 109.49674 * 304.93726 * 3 2 1 5 5 C 1.53187 * 109.50069 * 64.99808 * 3 2 1 6 6 N 1.46923 * 108.77984 * 174.58710 * 5 3 2 7 7 C 1.34772 * 120.63517 * 126.41632 * 6 5 3 8 8 O 1.21704 * 119.99651 * 354.35540 * 7 6 5 9 9 C 1.46576 * 120.00490 * 174.35934 * 7 6 5 10 10 S 1.75837 * 125.45806 * 318.79141 * 9 7 6 11 11 C 1.70610 * 91.56462 * 179.97438 * 10 9 7 12 12 C 1.33818 * 110.95574 * 359.97438 * 11 10 9 13 13 C 1.36652 * 125.46187 * 138.48223 * 9 7 6 14 14 C 1.50698 * 123.34934 * 0.02562 * 13 9 7 15 15 C 1.46934 * 118.73775 * 306.39491 * 6 5 3 16 16 C 1.53197 * 108.77291 * 53.60612 * 15 6 5 17 17 C 1.53035 * 109.31242 * 305.36363 * 16 15 6 18 18 H 1.08995 * 109.46541 * 301.34748 * 17 16 15 19 19 N 1.46509 * 109.45860 * 181.38593 * 17 16 15 20 20 C 1.36938 * 119.99786 * 84.93561 * 19 17 16 21 21 H 1.07997 * 119.99627 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99741 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99680 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00046 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47452 * 90.00198 * 24 22 20 26 26 H 1.48508 * 109.47146 * 210.00305 * 24 22 20 27 27 H 1.48506 * 109.47133 * 329.99950 * 24 22 20 28 28 H 1.09008 * 109.46843 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47471 * 60.00505 * 1 2 3 30 30 H 1.09002 * 109.47360 * 299.99520 * 1 2 3 31 31 H 1.08992 * 109.47471 * 119.99495 * 2 1 3 32 32 H 1.09002 * 109.47360 * 240.00480 * 2 1 3 33 33 H 1.08997 * 109.58937 * 294.37744 * 5 3 2 34 34 H 1.09005 * 109.58237 * 54.65818 * 5 3 2 35 35 H 1.07998 * 124.52669 * 180.02562 * 11 10 9 36 36 H 1.07997 * 122.45067 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47266 * 89.99636 * 14 13 9 38 38 H 1.08995 * 109.47290 * 209.99987 * 14 13 9 39 39 H 1.09008 * 109.47282 * 329.99702 * 14 13 9 40 40 H 1.08998 * 109.58508 * 173.39351 * 15 6 5 41 41 H 1.08999 * 109.58439 * 293.82307 * 15 6 5 42 42 H 1.08998 * 109.49787 * 65.31708 * 16 15 6 43 43 H 1.08999 * 109.49697 * 185.37882 * 16 15 6 44 44 H 0.96998 * 119.99664 * 264.93329 * 19 17 16 45 45 H 0.97006 * 119.99552 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6349 2.1281 1.3087 6 7 2.2412 3.4658 1.3493 7 6 1.4814 4.5580 1.5637 8 8 0.2702 4.4544 1.6235 9 6 2.1135 5.8706 1.7247 10 16 3.5815 6.1906 2.6382 11 6 3.5097 7.8529 2.2609 12 6 2.4447 8.1249 1.4976 13 6 1.6597 7.0408 1.1842 14 6 0.4201 7.1340 0.3323 15 6 3.6920 3.5901 1.1521 16 6 4.0739 2.8882 -0.1549 17 6 3.5655 1.4451 -0.1217 18 1 3.9988 0.9270 0.7337 19 7 3.9577 0.7610 -1.3565 20 6 5.1962 0.1852 -1.4564 21 1 5.8838 0.2358 -0.6251 22 6 5.5680 -0.4626 -2.6264 23 7 6.7585 -1.0155 -2.7226 24 14 4.3788 -0.5495 -4.0643 25 1 4.5810 0.6283 -4.9458 26 1 4.6256 -1.7938 -4.8364 27 1 2.9842 -0.5522 -3.5539 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5137 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 0.5496 2.2174 1.3538 34 1 1.9885 1.5385 2.1546 35 1 4.2283 8.5876 2.5930 36 1 2.2205 9.1225 1.1499 37 1 -0.4442 7.3259 0.9682 38 1 0.5319 7.9478 -0.3841 39 1 0.2759 6.1957 -0.2034 40 1 3.9638 4.6441 1.0939 41 1 4.2154 3.1210 1.9852 42 1 3.6216 3.4140 -0.9958 43 1 5.1582 2.8900 -0.2655 44 1 3.3402 0.7159 -2.1031 45 1 7.0182 -1.4685 -3.5402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037757753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:36 Heat of formation + Delta-G solvation = -14.404943 kcal Electronic energy + Delta-G solvation = -25777.358481 eV Core-core repulsion = 22306.685024 eV Total energy + Delta-G solvation = -3470.673457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47117 -39.62581 -38.52156 -36.32250 -35.39199 -33.63146 -31.98800 -31.56412 -30.57312 -29.00168 -26.62011 -25.25933 -24.62803 -23.98293 -22.28994 -21.90936 -21.12070 -19.60560 -19.27828 -18.91770 -17.46100 -16.96727 -16.74316 -16.34170 -15.99595 -15.89095 -15.27456 -15.06982 -14.75132 -14.74159 -14.61027 -14.45362 -14.19680 -13.93828 -13.81967 -13.56131 -13.23449 -13.15658 -12.99587 -12.89004 -12.78195 -12.58694 -12.55182 -12.19700 -12.04933 -11.85755 -11.83107 -11.63965 -11.57152 -11.16417 -11.12451 -10.88418 -9.88402 -9.64466 -9.35389 -9.20036 -7.99617 -5.31365 -0.39446 0.44560 0.96980 1.38259 1.39135 1.44797 1.46612 1.78574 2.10019 2.49422 3.32161 3.43069 3.54342 3.72400 3.93220 3.96569 3.97562 4.16504 4.24043 4.26136 4.35894 4.40719 4.43392 4.58540 4.61539 4.65390 4.72880 4.74255 4.76970 4.82627 4.96746 4.99583 5.01838 5.04334 5.12784 5.24055 5.29981 5.38777 5.43206 5.43970 5.46875 5.60169 5.80913 6.24533 6.27190 6.98869 7.10427 7.87042 8.05650 9.21944 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.003816 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.067567 B = 7335.452667 C = 8143.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.060 0.940 5 C 0.126 3.874 6 N -0.602 5.602 7 C 0.590 3.410 8 O -0.565 6.565 9 C -0.307 4.307 10 S 0.232 5.768 11 C -0.227 4.227 12 C -0.155 4.155 13 C -0.038 4.038 14 C -0.094 4.094 15 C 0.104 3.896 16 C -0.140 4.140 17 C 0.183 3.817 18 H 0.052 0.948 19 N -0.746 5.746 20 C -0.218 4.218 21 H 0.063 0.937 22 C -0.059 4.059 23 N -0.983 5.983 24 Si 0.944 3.056 25 H -0.284 1.284 26 H -0.299 1.299 27 H -0.254 1.254 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.199 0.801 36 H 0.168 0.832 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.362 0.638 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 18.212 11.900 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.116 4.116 4 H 0.078 0.922 5 C 0.003 3.997 6 N -0.333 5.333 7 C 0.379 3.621 8 O -0.447 6.447 9 C -0.427 4.427 10 S 0.501 5.499 11 C -0.364 4.364 12 C -0.186 4.186 13 C -0.053 4.053 14 C -0.153 4.153 15 C -0.019 4.019 16 C -0.181 4.181 17 C 0.075 3.925 18 H 0.070 0.930 19 N -0.389 5.389 20 C -0.349 4.349 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.634 5.634 24 Si 0.772 3.228 25 H -0.210 1.210 26 H -0.226 1.226 27 H -0.179 1.179 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.216 0.784 36 H 0.185 0.815 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.195 0.805 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.113 17.179 12.877 23.732 hybrid contribution -1.014 0.427 -2.184 2.446 sum -11.127 17.606 10.693 23.412 Atomic orbital electron populations 1.21794 0.94678 1.02077 1.01895 1.21419 0.96252 0.94876 1.02379 1.21687 0.95365 0.96852 0.97737 0.92177 1.21711 0.99611 0.81144 0.97216 1.48082 1.08862 1.06508 1.69894 1.17288 0.85853 0.83135 0.75822 1.90763 1.14584 1.86093 1.53216 1.24366 1.05847 0.97290 1.15200 1.83149 1.18477 1.00769 1.47524 1.25774 1.03952 1.02060 1.04632 1.20079 0.95605 1.00606 1.02262 1.19734 0.97695 0.90867 0.97034 1.20530 0.93688 1.02599 0.98434 1.22140 0.78948 1.02546 0.98268 1.22428 1.01553 0.97488 0.96628 1.20386 0.92539 0.91009 0.88570 0.92963 1.42782 1.14950 1.66418 1.14708 1.19014 0.91241 1.25549 0.99095 0.91884 1.25336 0.98052 1.01080 1.00598 1.69861 1.21543 1.43729 1.28312 0.85577 0.80178 0.76724 0.80298 1.21032 1.22575 1.17908 0.91933 0.93336 0.91788 0.91385 0.93046 0.88974 0.89670 0.78398 0.81494 0.90293 0.89041 0.93377 0.88482 0.89302 0.93081 0.91304 0.80502 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.67 71.98 0.70 -2.85 16 2 C -0.11 -3.24 5.31 30.60 0.16 -3.07 16 3 C -0.10 -2.90 1.92 -10.72 -0.02 -2.92 16 4 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 5 C 0.13 3.34 5.33 86.36 0.46 3.80 16 6 N -0.60 -16.28 2.97 -823.72 -2.45 -18.73 16 7 C 0.59 17.20 7.05 86.42 0.61 17.81 16 8 O -0.57 -19.52 15.42 -4.36 -0.07 -19.59 16 9 C -0.31 -7.44 5.38 24.08 0.13 -7.31 16 10 S 0.23 4.03 20.09 -56.49 -1.13 2.89 16 11 C -0.23 -3.12 10.92 66.81 0.73 -2.39 16 12 C -0.16 -2.45 9.97 21.08 0.21 -2.24 16 13 C -0.04 -0.81 5.90 -20.42 -0.12 -0.93 16 14 C -0.09 -1.91 9.49 71.24 0.68 -1.23 16 15 C 0.10 2.61 5.63 86.36 0.49 3.10 16 16 C -0.14 -4.46 5.66 30.67 0.17 -4.29 16 17 C 0.18 6.48 2.19 45.02 0.10 6.58 16 18 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 19 N -0.75 -33.22 4.14 -322.81 -1.34 -34.55 16 20 C -0.22 -11.87 10.41 84.03 0.87 -10.99 16 21 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 22 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 23 N -0.98 -62.01 13.97 21.65 0.30 -61.71 16 24 Si 0.94 45.28 27.73 68.60 1.90 47.18 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 27 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.40 6.70 -2.39 -0.02 1.39 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16 33 H 0.09 2.53 5.71 -2.39 -0.01 2.52 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.20 7.27 -2.38 -0.02 1.18 16 40 H 0.10 2.18 4.55 -11.24 -0.05 2.13 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.36 16.00 5.37 -92.71 -0.50 15.50 16 45 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -69.64 364.21 3.25 -66.39 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.39 Total: 28.00 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 5.63 Total: -9.89 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -3.48 Total: -114.98 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.07 Total: -19.59 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.13 Total: 2.89 kcal Total: -69.64 3.25 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037757753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.984 kcal (2) G-P(sol) polarization free energy of solvation -69.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds