Wall clock time and date at job start Tue Mar 31 2020 13:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47049 * 2 1 4 4 H 1.08999 * 109.50255 * 55.06245 * 3 2 1 5 5 C 1.53196 * 109.49872 * 294.99497 * 3 2 1 6 6 N 1.46921 * 108.77536 * 185.41336 * 5 3 2 7 7 C 1.34775 * 120.63249 * 233.62814 * 6 5 3 8 8 O 1.21704 * 119.99866 * 356.41735 * 7 6 5 9 9 C 1.46588 * 120.00188 * 176.41400 * 7 6 5 10 10 C 1.36646 * 125.45745 * 224.78263 * 9 7 6 11 11 C 1.37471 * 113.29508 * 179.83587 * 10 9 7 12 12 C 1.33821 * 115.10293 * 0.45935 * 11 10 9 13 13 C 1.50699 * 124.52672 * 179.76777 * 12 11 10 14 14 S 1.70621 * 110.95250 * 359.74485 * 12 11 10 15 15 C 1.46924 * 118.73879 * 53.61625 * 6 5 3 16 16 C 1.53192 * 108.77351 * 306.38515 * 15 6 5 17 17 C 1.53040 * 109.49604 * 175.16049 * 3 2 1 18 18 H 1.08998 * 109.46005 * 61.29595 * 17 3 2 19 19 N 1.46498 * 109.45996 * 301.33511 * 17 3 2 20 20 C 1.36934 * 119.99802 * 155.00149 * 19 17 3 21 21 H 1.08000 * 120.00765 * 359.97438 * 20 19 17 22 22 C 1.38824 * 119.99798 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99887 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99798 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47314 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46799 * 120.00040 * 24 22 20 27 27 H 1.48493 * 109.47054 * 239.99936 * 24 22 20 28 28 H 1.08998 * 109.47307 * 300.00411 * 1 2 3 29 29 H 1.09001 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47175 * 60.00472 * 1 2 3 31 31 H 1.09000 * 109.46453 * 120.00062 * 2 1 3 32 32 H 1.08998 * 109.47307 * 239.99589 * 2 1 3 33 33 H 1.09000 * 109.58570 * 305.20462 * 5 3 2 34 34 H 1.09008 * 109.58218 * 65.48520 * 5 3 2 35 35 H 1.07997 * 123.35325 * 0.02562 * 10 9 7 36 36 H 1.08000 * 122.45293 * 180.17752 * 11 10 9 37 37 H 1.08993 * 109.47121 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46960 * 300.00081 * 13 12 11 39 39 H 1.09000 * 109.47055 * 59.99644 * 13 12 11 40 40 H 1.09006 * 109.59111 * 66.17303 * 15 6 5 41 41 H 1.09002 * 109.58981 * 186.60116 * 15 6 5 42 42 H 1.09003 * 109.49911 * 174.58764 * 16 15 6 43 43 H 1.08999 * 109.49646 * 294.65491 * 16 15 6 44 44 H 0.96997 * 120.00065 * 334.99499 * 19 17 3 45 45 H 0.96997 * 120.00297 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6351 2.1279 -1.3089 6 7 2.2415 3.4655 -1.3494 7 6 1.4816 4.5579 -1.5630 8 8 0.2919 4.4367 -1.7894 9 6 2.0878 5.8919 -1.5226 10 6 1.5618 6.9829 -0.8899 11 6 2.3416 8.1088 -1.0088 12 6 3.4627 7.9502 -1.7221 13 6 4.4661 9.0421 -1.9901 14 16 3.6047 6.3465 -2.2871 15 6 3.6922 3.5898 -1.1523 16 6 4.0741 2.8879 0.1548 17 6 3.5655 1.4448 0.1217 18 1 3.9989 0.9266 -0.7337 19 7 3.9577 0.7607 1.3564 20 6 5.1961 0.1849 1.4563 21 1 5.8836 0.2347 0.6249 22 6 5.5675 -0.4638 2.6261 23 7 4.7296 -0.5249 3.6392 24 14 7.2566 -1.2499 2.7622 25 1 8.0027 -1.0424 1.4951 26 1 8.0038 -0.6264 3.8839 27 1 7.1062 -2.7052 3.0160 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.8932 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.9908 1.5396 -2.1547 34 1 0.5495 2.2150 -1.3551 35 1 0.6281 6.9618 -0.3476 36 1 2.0671 9.0535 -0.5632 37 1 5.2825 8.6452 -2.5935 38 1 3.9810 9.8578 -2.5261 39 1 4.8609 9.4130 -1.0442 40 1 4.2157 3.1206 -1.9854 41 1 3.9642 4.6437 -1.0941 42 1 5.1585 2.8891 0.2650 43 1 3.6223 3.4142 0.9957 44 1 3.3402 0.7157 2.1030 45 1 4.9892 -0.9779 4.4567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037769859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:42 Heat of formation + Delta-G solvation = -0.371609 kcal Electronic energy + Delta-G solvation = -25418.696303 eV Core-core repulsion = 21948.631377 eV Total energy + Delta-G solvation = -3470.064926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19799 -38.29507 -37.42290 -34.76719 -33.81511 -32.24728 -31.72933 -29.54506 -29.08645 -27.30641 -25.01696 -23.97490 -23.58534 -22.81331 -21.05709 -20.77393 -19.58114 -18.50471 -17.91857 -17.10406 -16.22173 -16.13815 -15.18508 -15.05683 -14.76265 -14.26161 -14.07839 -13.86627 -13.73194 -13.35042 -13.32515 -13.18443 -13.09405 -12.77065 -12.51083 -12.35357 -12.10409 -12.01385 -11.73332 -11.67428 -11.30115 -11.04003 -10.95566 -10.83701 -10.71588 -10.37470 -10.20331 -10.14460 -9.94097 -9.73283 -9.61451 -8.95220 -8.81560 -8.54780 -8.47543 -6.97796 -5.79262 -3.07919 0.46801 1.24078 1.70074 2.33865 2.87116 3.21307 3.40783 3.46571 3.48817 4.48727 4.55862 4.58054 4.91193 5.01552 5.16194 5.19452 5.21170 5.24691 5.34424 5.38216 5.43601 5.55072 5.59715 5.60541 5.66561 5.67888 5.82940 5.87415 5.99576 6.01416 6.11386 6.14717 6.21944 6.31425 6.35159 6.38593 6.44948 6.55397 6.66715 6.81408 6.94725 7.04366 7.43282 7.67695 8.13751 8.38793 9.50506 10.07752 10.42805 11.43229 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003693 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.328584 B = 7579.611253 C = 9109.984950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.598 5.598 7 C 0.589 3.411 8 O -0.537 6.537 9 C -0.259 4.259 10 C -0.064 4.064 11 C -0.153 4.153 12 C -0.214 4.214 13 C -0.083 4.083 14 S 0.219 5.781 15 C 0.094 3.906 16 C -0.148 4.148 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.720 5.720 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 15.591 -12.446 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.329 5.329 7 C 0.376 3.624 8 O -0.415 6.415 9 C -0.379 4.379 10 C -0.096 4.096 11 C -0.183 4.183 12 C -0.333 4.333 13 C -0.142 4.142 14 S 0.487 5.513 15 C -0.030 4.030 16 C -0.190 4.190 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.857 14.666 -13.462 20.112 hybrid contribution -0.189 0.455 1.451 1.532 sum -3.047 15.122 -12.011 19.551 Atomic orbital electron populations 1.21849 0.96793 1.01071 1.01325 1.21446 0.94385 0.95578 1.03525 1.21792 0.97708 0.96328 0.96650 0.91128 1.21799 0.99471 0.80866 0.98032 1.48047 1.08602 1.06578 1.69709 1.17036 0.85835 0.82647 0.76912 1.90806 1.14886 1.86147 1.49697 1.24509 1.01997 0.98930 1.12463 1.20613 1.00256 0.90232 0.98527 1.19870 0.95027 1.00157 1.03293 1.24372 1.01800 1.01451 1.05660 1.20356 0.96015 0.95088 1.02707 1.83200 1.17603 1.00115 1.50418 1.22251 0.79297 1.01680 0.99790 1.22666 1.02292 0.99157 0.94859 1.20190 0.90740 0.90469 0.91300 0.93342 1.42412 1.16512 1.64367 1.12708 1.19261 0.91793 1.27228 0.98626 0.91164 1.24724 0.98115 1.01531 0.96433 1.69665 1.35197 1.48361 1.04722 0.86166 0.84050 0.78910 0.77344 1.20585 1.21956 1.21923 0.92976 0.93133 0.93207 0.89728 0.92405 0.91402 0.88981 0.83439 0.84080 0.91360 0.90466 0.90287 0.91051 0.90115 0.90413 0.92106 0.78182 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.79 5.31 -26.73 -0.14 -1.93 16 3 C -0.10 -1.72 1.93 -90.50 -0.17 -1.90 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.12 1.79 5.31 -3.71 -0.02 1.77 16 6 N -0.60 -8.90 2.97 -174.34 -0.52 -9.42 16 7 C 0.59 9.31 7.54 -12.89 -0.10 9.22 16 8 O -0.54 -9.96 16.51 5.19 0.09 -9.87 16 9 C -0.26 -3.47 5.49 -36.79 -0.20 -3.67 16 10 C -0.06 -0.77 10.24 -40.44 -0.41 -1.19 16 11 C -0.15 -1.53 10.00 -41.41 -0.41 -1.95 16 12 C -0.21 -2.03 6.28 -35.86 -0.23 -2.26 16 13 C -0.08 -0.54 10.33 36.00 0.37 -0.17 16 14 S 0.22 2.30 19.82 -107.50 -2.13 0.17 16 15 C 0.09 1.29 5.89 -3.71 -0.02 1.27 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.18 3.43 2.19 -67.89 -0.15 3.28 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 N -0.72 -17.01 4.33 -53.38 -0.23 -17.24 16 20 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 24 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.64 6.69 -51.93 -0.35 0.29 16 31 H 0.08 1.63 7.22 -51.93 -0.37 1.25 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.41 5.74 -51.92 -0.30 1.12 16 35 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.02 4.00 -30.16 -0.12 0.90 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.38 9.84 7.51 -40.82 -0.31 9.54 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -30.81 369.85 -9.95 -40.76 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.91 Total: 8.69 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.52 Total: -8.80 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.02 Total: -53.33 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.13 Total: 0.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.81 -9.95 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037769859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.392 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds