Wall clock time and date at job start Tue Mar 31 2020 13:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 H 1.08999 * 109.51990 * 54.92236 * 3 2 1 5 5 C 1.52761 * 109.56577 * 294.96949 * 3 2 1 6 6 N 1.46930 * 109.00700 * 185.55076 * 5 3 2 7 7 C 1.34777 * 120.63012 * 233.58026 * 6 5 3 8 8 O 1.21693 * 120.00029 * 6.19859 * 7 6 5 9 9 C 1.46579 * 119.99757 * 186.19706 * 7 6 5 10 10 C 1.36645 * 125.46108 * 210.54470 * 9 7 6 11 11 C 1.37468 * 113.30275 * 180.26861 * 10 9 7 12 12 C 1.33820 * 115.09846 * 359.50742 * 11 10 9 13 13 C 1.50697 * 124.52099 * 180.21610 * 12 11 10 14 14 S 1.70616 * 110.95276 * 0.47884 * 12 11 10 15 15 C 1.46930 * 118.73698 * 53.30917 * 6 5 3 16 16 C 1.53191 * 108.77500 * 306.64378 * 15 6 5 17 17 C 1.53033 * 109.31620 * 54.63419 * 16 15 6 18 18 H 1.09000 * 109.46369 * 178.61887 * 17 16 15 19 19 N 1.46498 * 109.45973 * 58.64263 * 17 16 15 20 20 C 1.36937 * 119.99986 * 85.00098 * 19 17 16 21 21 H 1.07996 * 120.00046 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99966 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99973 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47151 * 90.00044 * 24 22 20 26 26 H 1.48507 * 109.47026 * 209.99624 * 24 22 20 27 27 H 1.48496 * 109.47379 * 329.99838 * 24 22 20 28 28 H 1.09000 * 109.46849 * 299.99899 * 1 2 3 29 29 H 1.09001 * 109.47187 * 59.99893 * 1 2 3 30 30 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46955 * 240.00623 * 2 1 3 32 32 H 1.08995 * 109.47390 * 120.00469 * 2 1 3 33 33 H 1.08997 * 109.51283 * 65.66571 * 5 3 2 34 34 H 1.09001 * 109.43394 * 305.38398 * 5 3 2 35 35 H 1.08010 * 123.34707 * 0.02562 * 10 9 7 36 36 H 1.07997 * 122.45317 * 179.72988 * 11 10 9 37 37 H 1.09008 * 109.46760 * 180.27646 * 13 12 11 38 38 H 1.09001 * 109.47065 * 300.27430 * 13 12 11 39 39 H 1.08995 * 109.47397 * 60.28203 * 13 12 11 40 40 H 1.09002 * 109.58760 * 66.42700 * 15 6 5 41 41 H 1.08996 * 109.58391 * 186.71237 * 15 6 5 42 42 H 1.08998 * 109.49662 * 174.58909 * 16 15 6 43 43 H 1.09007 * 109.49586 * 294.68201 * 16 15 6 44 44 H 0.97001 * 120.00435 * 264.99925 * 19 17 16 45 45 H 0.96995 * 119.99748 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6377 2.1274 -1.3049 6 7 2.2451 3.4645 -1.3506 7 6 1.4856 4.5566 -1.5671 8 8 0.2738 4.4554 -1.6145 9 6 2.1193 5.8663 -1.7454 10 6 1.5697 7.0672 -1.3947 11 6 2.3803 8.1402 -1.6799 12 6 3.5578 7.8303 -2.2351 13 6 4.6079 8.8371 -2.6283 14 16 3.7084 6.1438 -2.4450 15 6 3.6953 3.5889 -1.1497 16 6 4.0737 2.8881 0.1589 17 6 3.5653 1.4451 0.1257 18 1 3.8546 0.9369 1.0456 19 7 4.1505 0.7477 -1.0220 20 6 5.3877 0.1708 -0.9146 21 1 5.9319 0.2295 0.0164 22 6 5.9425 -0.4896 -2.0023 23 7 5.2790 -0.5617 -3.1368 24 14 7.6305 -1.2760 -1.8559 25 1 7.4843 -2.6798 -1.3941 26 1 8.3015 -1.2581 -3.1806 27 1 8.4477 -0.5153 -0.8768 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.5524 2.2173 -1.3492 34 1 1.9922 1.5360 -2.1491 35 1 0.5937 7.1640 -0.9423 36 1 2.0897 9.1585 -1.4679 37 1 5.4640 8.3190 -3.0607 38 1 4.1925 9.5276 -3.3623 39 1 4.9270 9.3926 -1.7465 40 1 4.2209 3.1190 -1.9810 41 1 3.9673 4.6429 -1.0943 42 1 5.1578 2.8894 0.2719 43 1 3.6193 3.4148 0.9982 44 1 3.6616 0.6945 -1.8581 45 1 5.6665 -1.0234 -3.8967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037769863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:47 Heat of formation + Delta-G solvation = 2.270168 kcal Electronic energy + Delta-G solvation = -25837.983963 eV Core-core repulsion = 22368.033594 eV Total energy + Delta-G solvation = -3469.950370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10406 -38.28920 -37.32572 -34.47901 -33.76930 -32.12438 -31.69974 -29.50409 -28.83580 -27.26876 -24.94365 -23.90576 -23.56685 -23.32601 -21.06173 -20.73364 -18.92145 -18.24504 -17.67036 -17.28359 -15.98841 -15.94481 -15.14778 -14.93750 -14.68120 -14.17686 -14.09373 -13.95988 -13.64046 -13.29843 -13.26686 -13.16953 -12.99821 -12.58981 -12.46513 -12.29439 -12.14997 -11.93930 -11.63908 -11.41225 -11.14839 -11.06397 -10.88659 -10.78943 -10.61219 -10.28684 -10.27293 -10.18085 -9.79776 -9.73663 -9.55854 -8.96033 -8.70550 -8.39603 -8.22578 -6.99115 -5.80451 -3.08922 0.55029 1.42721 1.87722 2.40860 3.14909 3.36867 3.40403 3.46287 3.47609 4.56108 4.62654 4.71173 5.02061 5.11574 5.24974 5.27816 5.29039 5.33397 5.47075 5.48417 5.53072 5.57697 5.69762 5.70378 5.80141 5.80668 5.90808 5.94675 6.06488 6.11471 6.15240 6.17420 6.32494 6.34572 6.38099 6.41183 6.56525 6.62761 6.69790 6.76501 6.93075 6.99626 7.65074 7.67516 8.31713 8.37934 9.49722 10.06062 10.41388 11.41926 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004482 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.759839 B = 6245.748524 C = 8032.306606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.587 3.413 8 O -0.542 6.542 9 C -0.265 4.265 10 C -0.062 4.062 11 C -0.158 4.158 12 C -0.222 4.222 13 C -0.083 4.083 14 S 0.239 5.761 15 C 0.102 3.898 16 C -0.146 4.146 17 C 0.178 3.822 18 H 0.053 0.947 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 15.154 3.833 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.327 5.327 7 C 0.374 3.626 8 O -0.422 6.422 9 C -0.385 4.385 10 C -0.095 4.095 11 C -0.189 4.189 12 C -0.341 4.341 13 C -0.142 4.142 14 S 0.508 5.492 15 C -0.022 4.022 16 C -0.187 4.187 17 C 0.068 3.932 18 H 0.070 0.930 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.209 1.209 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.824 14.085 3.227 14.947 hybrid contribution -0.167 0.586 0.369 0.712 sum -3.991 14.671 3.596 15.623 Atomic orbital electron populations 1.21858 0.96799 1.01034 1.01391 1.21411 0.94284 0.95622 1.03409 1.21678 0.97409 0.96208 0.97068 0.91503 1.21647 0.98862 0.81074 0.98570 1.47990 1.08743 1.06488 1.69505 1.17004 0.86201 0.82431 0.76935 1.90778 1.13245 1.85499 1.52700 1.24610 1.00900 0.98000 1.14981 1.20621 1.00419 0.89785 0.98691 1.19838 0.94038 1.00362 1.04634 1.24572 1.00953 1.01698 1.06868 1.20348 0.95474 0.96375 1.01956 1.83647 1.12473 0.96666 1.56384 1.22106 0.79198 1.00197 1.00663 1.22500 1.01927 0.99213 0.95106 1.20229 0.89735 0.90531 0.92718 0.92954 1.42477 1.19157 1.63911 1.10534 1.19217 0.93624 1.26995 0.97042 0.91244 1.24690 0.98513 1.01447 0.96001 1.69645 1.38151 1.47987 1.02229 0.86253 0.84264 0.79381 0.76635 1.21839 1.21906 1.20852 0.93352 0.92783 0.93148 0.90459 0.91975 0.89395 0.90522 0.83501 0.84368 0.91308 0.90544 0.90495 0.89260 0.90829 0.90521 0.93206 0.78101 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 3 C -0.10 -1.70 2.12 -90.72 -0.19 -1.89 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.12 2.07 5.02 -3.93 -0.02 2.05 16 6 N -0.60 -10.13 2.98 -174.61 -0.52 -10.65 16 7 C 0.59 10.24 7.58 -12.90 -0.10 10.15 16 8 O -0.54 -10.80 16.40 5.20 0.09 -10.72 16 9 C -0.26 -3.92 5.73 -36.80 -0.21 -4.13 16 10 C -0.06 -0.81 10.14 -40.44 -0.41 -1.22 16 11 C -0.16 -1.72 10.00 -41.41 -0.41 -2.13 16 12 C -0.22 -2.38 6.28 -35.86 -0.23 -2.61 16 13 C -0.08 -0.64 10.33 36.00 0.37 -0.27 16 14 S 0.24 3.02 19.25 -107.50 -2.07 0.95 16 15 C 0.10 1.67 5.27 -3.71 -0.02 1.65 16 16 C -0.15 -2.44 5.78 -26.62 -0.15 -2.59 16 17 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 18 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 19 N -0.72 -16.20 3.72 -53.39 -0.20 -16.40 16 20 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 21 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 24 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.52 5.71 -51.93 -0.30 1.22 16 34 H 0.08 1.44 6.64 -51.93 -0.34 1.10 16 35 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.07 0.50 8.11 -51.92 -0.42 0.08 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 41 H 0.07 1.08 3.98 -26.21 -0.10 0.98 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.38 9.31 5.95 -40.82 -0.24 9.07 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -29.54 365.36 -9.82 -39.36 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.75 Total: 9.54 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.57 Total: -8.10 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.01 Total: -52.99 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.07 Total: 0.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.54 -9.82 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037769863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.625 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds