Wall clock time and date at job start Tue Mar 31 2020 13:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 H 1.08999 * 109.51990 * 54.92236 * 3 2 1 5 5 C 1.52761 * 109.56577 * 294.96949 * 3 2 1 6 6 N 1.46930 * 109.00700 * 185.55076 * 5 3 2 7 7 C 1.34777 * 120.63012 * 233.58026 * 6 5 3 8 8 O 1.21693 * 120.00029 * 6.19859 * 7 6 5 9 9 C 1.46579 * 119.99757 * 186.19706 * 7 6 5 10 10 C 1.36645 * 125.46108 * 210.54470 * 9 7 6 11 11 C 1.37468 * 113.30275 * 180.26861 * 10 9 7 12 12 C 1.33820 * 115.09846 * 359.50742 * 11 10 9 13 13 C 1.50697 * 124.52099 * 180.21610 * 12 11 10 14 14 S 1.70616 * 110.95276 * 0.47884 * 12 11 10 15 15 C 1.46930 * 118.73698 * 53.30917 * 6 5 3 16 16 C 1.53191 * 108.77500 * 306.64378 * 15 6 5 17 17 C 1.53033 * 109.31620 * 54.63419 * 16 15 6 18 18 H 1.09000 * 109.46369 * 178.61887 * 17 16 15 19 19 N 1.46498 * 109.45973 * 58.64263 * 17 16 15 20 20 C 1.36937 * 119.99986 * 85.00098 * 19 17 16 21 21 H 1.07996 * 120.00046 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99966 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99973 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47151 * 90.00044 * 24 22 20 26 26 H 1.48507 * 109.47026 * 209.99624 * 24 22 20 27 27 H 1.48496 * 109.47379 * 329.99838 * 24 22 20 28 28 H 1.09000 * 109.46849 * 299.99899 * 1 2 3 29 29 H 1.09001 * 109.47187 * 59.99893 * 1 2 3 30 30 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46955 * 240.00623 * 2 1 3 32 32 H 1.08995 * 109.47390 * 120.00469 * 2 1 3 33 33 H 1.08997 * 109.51283 * 65.66571 * 5 3 2 34 34 H 1.09001 * 109.43394 * 305.38398 * 5 3 2 35 35 H 1.08010 * 123.34707 * 0.02562 * 10 9 7 36 36 H 1.07997 * 122.45317 * 179.72988 * 11 10 9 37 37 H 1.09008 * 109.46760 * 180.27646 * 13 12 11 38 38 H 1.09001 * 109.47065 * 300.27430 * 13 12 11 39 39 H 1.08995 * 109.47397 * 60.28203 * 13 12 11 40 40 H 1.09002 * 109.58760 * 66.42700 * 15 6 5 41 41 H 1.08996 * 109.58391 * 186.71237 * 15 6 5 42 42 H 1.08998 * 109.49662 * 174.58909 * 16 15 6 43 43 H 1.09007 * 109.49586 * 294.68201 * 16 15 6 44 44 H 0.97001 * 120.00435 * 264.99925 * 19 17 16 45 45 H 0.96995 * 119.99748 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6377 2.1274 -1.3049 6 7 2.2451 3.4645 -1.3506 7 6 1.4856 4.5566 -1.5671 8 8 0.2738 4.4554 -1.6145 9 6 2.1193 5.8663 -1.7454 10 6 1.5697 7.0672 -1.3947 11 6 2.3803 8.1402 -1.6799 12 6 3.5578 7.8303 -2.2351 13 6 4.6079 8.8371 -2.6283 14 16 3.7084 6.1438 -2.4450 15 6 3.6953 3.5889 -1.1497 16 6 4.0737 2.8881 0.1589 17 6 3.5653 1.4451 0.1257 18 1 3.8546 0.9369 1.0456 19 7 4.1505 0.7477 -1.0220 20 6 5.3877 0.1708 -0.9146 21 1 5.9319 0.2295 0.0164 22 6 5.9425 -0.4896 -2.0023 23 7 5.2790 -0.5617 -3.1368 24 14 7.6305 -1.2760 -1.8559 25 1 7.4843 -2.6798 -1.3941 26 1 8.3015 -1.2581 -3.1806 27 1 8.4477 -0.5153 -0.8768 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.5524 2.2173 -1.3492 34 1 1.9922 1.5360 -2.1491 35 1 0.5937 7.1640 -0.9423 36 1 2.0897 9.1585 -1.4679 37 1 5.4640 8.3190 -3.0607 38 1 4.1925 9.5276 -3.3623 39 1 4.9270 9.3926 -1.7465 40 1 4.2209 3.1190 -1.9810 41 1 3.9673 4.6429 -1.0943 42 1 5.1578 2.8894 0.2719 43 1 3.6193 3.4148 0.9982 44 1 3.6616 0.6945 -1.8581 45 1 5.6665 -1.0234 -3.8967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037769863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:46 Heat of formation + Delta-G solvation = -13.443514 kcal Electronic energy + Delta-G solvation = -25838.665360 eV Core-core repulsion = 22368.033594 eV Total energy + Delta-G solvation = -3470.631766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47264 -39.52280 -38.48279 -35.95796 -35.38989 -33.43083 -32.97662 -31.06418 -30.24790 -28.36860 -26.31051 -25.40515 -25.16276 -24.33695 -22.33936 -21.98051 -20.25592 -19.49016 -19.14070 -18.92398 -17.28383 -17.04437 -16.64773 -16.27340 -16.14622 -15.70749 -15.52307 -14.99244 -14.82398 -14.78914 -14.53697 -14.35922 -14.10146 -14.01526 -13.71158 -13.34848 -13.16822 -13.04182 -12.84011 -12.81791 -12.67672 -12.64315 -12.42708 -12.26692 -12.09717 -11.85885 -11.65051 -11.56412 -11.45226 -11.15798 -11.10335 -10.81890 -9.81380 -9.52016 -9.40867 -8.90571 -7.86560 -5.12977 -0.45724 0.42102 0.92760 1.41788 1.51012 1.51948 1.59390 1.87029 2.10320 2.61481 3.44365 3.47394 3.79116 3.85134 3.89997 3.98345 4.05582 4.21085 4.29849 4.32032 4.40664 4.42833 4.46350 4.55856 4.65607 4.68748 4.76309 4.79410 4.84491 4.97735 5.00950 5.05961 5.10689 5.15089 5.18206 5.21322 5.24841 5.26964 5.39673 5.45763 5.50273 5.60715 5.63969 6.30873 6.34773 6.96884 7.42664 8.17601 8.42063 9.36710 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004482 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.759839 B = 6245.748524 C = 8032.306606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.083 0.917 5 C 0.126 3.874 6 N -0.597 5.597 7 C 0.586 3.414 8 O -0.576 6.576 9 C -0.305 4.305 10 C -0.050 4.050 11 C -0.163 4.163 12 C -0.200 4.200 13 C -0.086 4.086 14 S 0.221 5.779 15 C 0.110 3.890 16 C -0.140 4.140 17 C 0.173 3.827 18 H 0.052 0.948 19 N -0.723 5.723 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.070 4.070 23 N -0.968 5.968 24 Si 0.962 3.038 25 H -0.294 1.294 26 H -0.302 1.302 27 H -0.269 1.269 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 17.654 5.345 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.112 4.112 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.328 5.328 7 C 0.375 3.625 8 O -0.458 6.458 9 C -0.425 4.425 10 C -0.084 4.084 11 C -0.193 4.193 12 C -0.320 4.320 13 C -0.144 4.144 14 S 0.490 5.510 15 C -0.014 4.014 16 C -0.180 4.180 17 C 0.064 3.936 18 H 0.070 0.930 19 N -0.364 5.364 20 C -0.358 4.358 21 H 0.094 0.906 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.793 3.207 25 H -0.222 1.222 26 H -0.229 1.229 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.170 0.830 36 H 0.187 0.813 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.384 16.606 4.793 17.612 hybrid contribution -0.330 -0.049 -0.071 0.341 sum -3.715 16.557 4.722 17.613 Atomic orbital electron populations 1.21792 0.94782 1.01971 1.01838 1.21331 0.96034 0.94902 1.01938 1.21588 0.95959 0.96627 0.97049 0.89841 1.21505 0.98718 0.81296 0.98144 1.48017 1.08907 1.06385 1.69484 1.17380 0.85883 0.83301 0.75941 1.90742 1.14586 1.86197 1.54268 1.24414 1.02559 0.97187 1.18297 1.20903 1.00616 0.89744 0.97109 1.20100 0.93614 1.01173 1.04397 1.24981 1.01511 1.00707 1.04781 1.20530 0.94702 0.95926 1.03282 1.83670 1.11531 0.98986 1.56814 1.22019 0.78624 1.01361 0.99369 1.22392 1.01737 0.97900 0.96009 1.20436 0.90951 0.91163 0.91025 0.93001 1.42575 1.18410 1.64161 1.11300 1.19569 0.94287 1.25199 0.96768 0.90594 1.25355 1.01710 1.03150 0.96044 1.69802 1.39614 1.49724 1.02836 0.85303 0.80906 0.78355 0.76166 1.22157 1.22910 1.19427 0.91865 0.93291 0.92033 0.93552 0.91703 0.89438 0.92932 0.83038 0.81275 0.90924 0.88757 0.88561 0.92166 0.88649 0.90911 0.90915 0.79328 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.67 71.98 0.70 -3.20 16 2 C -0.10 -3.32 5.19 30.60 0.16 -3.16 16 3 C -0.09 -3.01 2.12 -10.86 -0.02 -3.04 16 4 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 5 C 0.13 4.44 5.02 86.22 0.43 4.88 16 6 N -0.60 -20.59 2.98 -824.55 -2.46 -23.05 16 7 C 0.59 20.58 7.58 86.42 0.66 21.24 16 8 O -0.58 -23.24 16.40 -4.33 -0.07 -23.31 16 9 C -0.30 -8.82 5.73 24.07 0.14 -8.69 16 10 C -0.05 -1.20 10.14 21.71 0.22 -0.98 16 11 C -0.16 -3.03 10.00 21.08 0.21 -2.82 16 12 C -0.20 -3.71 6.28 24.68 0.15 -3.55 16 13 C -0.09 -1.00 10.33 71.23 0.74 -0.26 16 14 S 0.22 5.34 19.25 -56.49 -1.09 4.25 16 15 C 0.11 3.62 5.27 86.36 0.45 4.07 16 16 C -0.14 -4.53 5.78 30.67 0.18 -4.35 16 17 C 0.17 6.34 2.53 45.02 0.11 6.46 16 18 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 19 N -0.72 -33.34 3.72 -322.82 -1.20 -34.54 16 20 C -0.23 -11.66 9.93 84.03 0.83 -10.83 16 21 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 23 N -0.97 -57.25 13.06 21.65 0.28 -56.96 16 24 Si 0.96 44.73 29.55 68.60 2.03 46.76 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.34 6.70 -2.39 -0.02 1.33 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.77 7.70 -2.39 -0.02 1.75 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 3.10 5.71 -2.39 -0.01 3.09 16 34 H 0.05 2.11 6.64 -2.39 -0.02 2.09 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.07 0.82 8.11 -2.38 -0.02 0.80 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 2.35 7.74 -2.39 -0.02 2.33 16 41 H 0.10 2.75 3.98 -18.75 -0.07 2.68 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.37 18.91 5.95 -92.71 -0.55 18.36 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -64.80 365.36 3.30 -61.50 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.38 Total: 32.96 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.43 Total: -7.62 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -3.37 Total: -114.55 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.07 Total: -23.31 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -1.09 Total: 4.25 kcal Total: -64.80 3.30 -61.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037769863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.059 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds