Wall clock time and date at job start Tue Mar 31 2020 13:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49848 * 304.94106 * 3 2 1 5 5 C 1.53196 * 109.49558 * 65.00293 * 3 2 1 6 6 N 1.46927 * 108.77402 * 174.58582 * 5 3 2 7 7 C 1.34775 * 120.62981 * 126.37214 * 6 5 3 8 8 O 1.21278 * 120.00231 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99753 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.46792 * 179.97438 * 9 7 6 11 11 C 1.38424 * 122.53603 * 269.73180 * 10 9 7 12 12 C 1.33388 * 114.92016 * 179.76449 * 11 10 9 13 13 S 1.75878 * 109.59541 * 0.47510 * 12 11 10 14 14 C 1.33383 * 122.54558 * 90.02190 * 10 9 7 15 15 C 1.46928 * 118.73870 * 306.39241 * 6 5 3 16 16 C 1.53192 * 108.77671 * 53.60746 * 15 6 5 17 17 C 1.53038 * 109.31135 * 305.36432 * 16 15 6 18 18 H 1.08998 * 109.46538 * 301.34500 * 17 16 15 19 19 N 1.46505 * 109.46004 * 181.38218 * 17 16 15 20 20 C 1.36939 * 119.99594 * 84.93171 * 19 17 16 21 21 H 1.08000 * 119.99824 * 0.02562 * 20 19 17 22 22 C 1.38809 * 119.99979 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99938 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00145 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46880 * 60.00064 * 24 22 20 26 26 H 1.48505 * 109.46878 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47254 * 299.99837 * 24 22 20 28 28 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 32 32 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 33 33 H 1.08998 * 109.58426 * 294.37195 * 5 3 2 34 34 H 1.08998 * 109.58865 * 54.79946 * 5 3 2 35 35 H 1.09002 * 109.46829 * 299.99243 * 9 7 6 36 36 H 1.08995 * 109.47449 * 59.99518 * 9 7 6 37 37 H 1.08000 * 122.54012 * 359.97438 * 11 10 9 38 38 H 1.08001 * 125.20565 * 180.20778 * 12 11 10 39 39 H 1.08007 * 125.20016 * 0.02562 * 14 10 9 40 40 H 1.09000 * 109.58405 * 173.39785 * 15 6 5 41 41 H 1.09008 * 109.58394 * 293.82062 * 15 6 5 42 42 H 1.08998 * 109.49434 * 65.31687 * 16 15 6 43 43 H 1.09001 * 109.49503 * 185.41206 * 16 15 6 44 44 H 0.96995 * 120.00082 * 264.94137 * 19 17 16 45 45 H 0.97005 * 120.00111 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6351 2.1279 1.3089 6 7 2.2416 3.4656 1.3494 7 6 1.4816 4.5579 1.5631 8 8 0.2851 4.4422 1.7236 9 6 2.1185 5.9232 1.6013 10 6 1.0589 6.9649 1.8527 11 6 0.3739 7.5927 0.8266 12 6 -0.5348 8.4859 1.2215 13 16 -0.5473 8.5775 2.9779 14 6 0.7139 7.3558 3.0804 15 6 3.6923 3.5898 1.1522 16 6 4.0741 2.8879 -0.1548 17 6 3.5656 1.4449 -0.1217 18 1 3.9990 0.9266 0.7337 19 7 3.9578 0.7607 -1.3564 20 6 5.1962 0.1849 -1.4564 21 1 5.8836 0.2348 -0.6249 22 6 5.5680 -0.4628 -2.6264 23 7 4.7300 -0.5241 -3.6395 24 14 7.2570 -1.2489 -2.7626 25 1 7.4045 -2.2899 -1.7138 26 1 7.4064 -1.8721 -4.1023 27 1 8.3026 -0.2104 -2.5798 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 0.5498 2.2173 1.3539 34 1 1.9909 1.5397 2.1547 35 1 2.8583 5.9567 2.4011 36 1 2.6056 6.1238 0.6471 37 1 0.5586 7.3735 -0.2146 38 1 -1.1633 9.0673 0.5633 39 1 1.1437 6.9800 3.9972 40 1 3.9642 4.6437 1.0941 41 1 4.2158 3.1207 1.9854 42 1 3.6219 3.4138 -0.9956 43 1 5.1586 2.8892 -0.2650 44 1 3.3402 0.7158 -2.1030 45 1 4.9897 -0.9771 -4.4570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037778078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:43 Heat of formation + Delta-G solvation = 0.792200 kcal Electronic energy + Delta-G solvation = -25229.988782 eV Core-core repulsion = 21759.974323 eV Total energy + Delta-G solvation = -3470.014459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29186 -38.48220 -37.29371 -34.72097 -33.80704 -31.74682 -31.41021 -29.51045 -29.04524 -27.78341 -25.02166 -23.90984 -23.30146 -22.64090 -20.83072 -20.02435 -19.20437 -18.59323 -17.69311 -17.17225 -17.00167 -15.96142 -15.43763 -15.02856 -14.91015 -14.14572 -13.94693 -13.68362 -13.48191 -13.30439 -13.23845 -13.14324 -12.95510 -12.73129 -12.55780 -12.32331 -12.11641 -11.78492 -11.75540 -11.60638 -11.28792 -10.95229 -10.92364 -10.86016 -10.69648 -10.34746 -10.24737 -10.16124 -9.78959 -9.67398 -9.60368 -8.92597 -8.89979 -8.49497 -8.44675 -6.98665 -5.79589 -3.08397 0.89349 1.54008 1.84563 2.51017 2.72015 3.22946 3.40803 3.45738 3.46714 4.55384 4.62456 4.68727 4.78721 5.01288 5.11147 5.21896 5.23017 5.28402 5.33968 5.35525 5.45425 5.51454 5.57052 5.59869 5.68402 5.69753 5.88899 5.90517 6.01912 6.12695 6.15411 6.23854 6.30702 6.32692 6.36288 6.39947 6.45703 6.57628 6.67895 6.82177 6.95486 7.04780 7.54016 7.65868 8.28225 8.38627 9.50000 10.07520 10.42371 11.42748 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021230 B = 0.002712 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.591746 B =10320.685427 C =10975.726015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.607 5.607 7 C 0.516 3.484 8 O -0.540 6.540 9 C -0.083 4.083 10 C -0.080 4.080 11 C -0.119 4.119 12 C -0.213 4.213 13 S 0.086 5.914 14 C -0.200 4.200 15 C 0.106 3.894 16 C -0.152 4.152 17 C 0.184 3.816 18 H 0.047 0.953 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 15.543 12.812 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.341 5.341 7 C 0.303 3.697 8 O -0.418 6.418 9 C -0.125 4.125 10 C -0.093 4.093 11 C -0.149 4.149 12 C -0.348 4.348 13 S 0.349 5.651 14 C -0.335 4.335 15 C -0.018 4.018 16 C -0.193 4.193 17 C 0.073 3.927 18 H 0.065 0.935 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.875 16.249 13.965 23.191 hybrid contribution 1.698 -1.307 -1.541 2.639 sum -7.177 14.942 12.424 20.715 Atomic orbital electron populations 1.21843 0.96829 1.01013 1.01299 1.21451 0.94359 0.95743 1.03431 1.21779 0.97599 0.96234 0.96785 0.91266 1.21731 0.99406 0.81488 0.97682 1.48184 1.08477 1.06723 1.70674 1.20444 0.86998 0.85751 0.76508 1.90688 1.14786 1.86495 1.49784 1.20420 0.96856 0.90361 1.04872 1.18375 0.99762 0.98756 0.92357 1.20054 0.97159 0.97234 1.00503 1.25504 1.05545 1.06255 0.97483 1.84144 1.37734 1.39711 1.03488 1.25367 1.03309 1.03693 1.01140 1.21892 0.79462 1.01142 0.99274 1.22688 1.02194 0.99324 0.95137 1.20180 0.90778 0.90516 0.91198 0.93471 1.42407 1.16467 1.64438 1.12736 1.19162 0.91813 1.27467 0.98556 0.91308 1.24724 0.98119 1.01528 0.96442 1.69647 1.35319 1.48309 1.04735 0.86307 0.84164 0.79189 0.76738 1.21319 1.21762 1.21333 0.93231 0.93016 0.93186 0.92489 0.89816 0.89223 0.91819 0.88064 0.87738 0.84292 0.81941 0.82100 0.90454 0.91452 0.92178 0.90558 0.78205 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.95 16 3 C -0.10 -1.68 1.93 -90.50 -0.17 -1.85 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.72 5.32 -3.71 -0.02 1.70 16 6 N -0.61 -8.19 2.97 -172.76 -0.51 -8.71 16 7 C 0.52 7.15 7.69 -10.98 -0.08 7.07 16 8 O -0.54 -9.42 15.45 5.56 0.09 -9.34 16 9 C -0.08 -0.85 4.30 -29.03 -0.12 -0.98 16 10 C -0.08 -0.90 4.29 -106.25 -0.46 -1.35 16 11 C -0.12 -1.31 9.98 -41.21 -0.41 -1.72 16 12 C -0.21 -2.10 11.23 29.04 0.33 -1.77 16 13 S 0.09 0.83 23.34 -107.50 -2.51 -1.68 16 14 C -0.20 -2.10 10.98 29.04 0.32 -1.78 16 15 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 16 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 17 C 0.18 3.35 2.19 -67.89 -0.15 3.21 16 18 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 19 N -0.72 -16.86 4.33 -53.38 -0.23 -17.09 16 20 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 24 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.61 7.22 -51.93 -0.37 1.24 16 33 H 0.09 1.38 5.72 -51.93 -0.30 1.08 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.81 7.92 -51.93 -0.41 0.40 16 36 H 0.10 0.93 7.68 -51.93 -0.40 0.54 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 40 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 41 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.38 9.78 7.51 -40.82 -0.31 9.47 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -31.05 372.56 -9.89 -40.94 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.06 Total: 9.50 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.98 Total: -9.36 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.02 Total: -52.42 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.05 -9.89 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.733 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds