Wall clock time and date at job start Tue Mar 31 2020 13:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47224 * 2 1 4 4 H 1.08993 * 109.49940 * 54.93518 * 3 2 1 5 5 C 1.53200 * 109.49955 * 294.84014 * 3 2 1 6 6 N 1.46924 * 108.77587 * 185.41376 * 5 3 2 7 7 C 1.34777 * 120.63027 * 233.63073 * 6 5 3 8 8 O 1.21279 * 119.99781 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00025 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47161 * 180.02562 * 9 7 6 11 11 C 1.38417 * 122.54362 * 89.99774 * 10 9 7 12 12 C 1.33388 * 114.92628 * 179.97438 * 11 10 9 13 13 S 1.75894 * 109.59044 * 0.02562 * 12 11 10 14 14 C 1.33393 * 122.53703 * 269.70546 * 10 9 7 15 15 C 1.46925 * 118.73712 * 53.60850 * 6 5 3 16 16 C 1.53161 * 108.77227 * 306.38918 * 15 6 5 17 17 C 1.53043 * 109.49511 * 175.00539 * 3 2 1 18 18 H 1.08992 * 109.45900 * 301.31934 * 17 3 2 19 19 N 1.46496 * 109.46122 * 61.29842 * 17 3 2 20 20 C 1.36945 * 119.99718 * 205.02716 * 19 17 3 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 17 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 H 1.09006 * 109.46846 * 299.99530 * 1 2 3 29 29 H 1.09001 * 109.47667 * 59.99680 * 1 2 3 30 30 H 1.09001 * 109.47535 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46603 * 239.99976 * 2 1 3 32 32 H 1.08998 * 109.47029 * 120.00686 * 2 1 3 33 33 H 1.08998 * 109.58526 * 305.20582 * 5 3 2 34 34 H 1.09003 * 109.58452 * 65.48005 * 5 3 2 35 35 H 1.09004 * 109.46942 * 300.00281 * 9 7 6 36 36 H 1.09001 * 109.47464 * 59.99833 * 9 7 6 37 37 H 1.08003 * 122.54001 * 359.95783 * 11 10 9 38 38 H 1.07994 * 125.21021 * 180.02562 * 12 11 10 39 39 H 1.07996 * 125.20220 * 0.03182 * 14 10 9 40 40 H 1.09000 * 109.58821 * 66.18017 * 15 6 5 41 41 H 1.08997 * 109.58441 * 186.60018 * 15 6 5 42 42 H 1.09003 * 109.50425 * 294.68620 * 16 15 6 43 43 H 1.09003 * 109.47956 * 174.59174 * 16 15 6 44 44 H 0.96996 * 120.00499 * 25.02446 * 19 17 3 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9822 0.8409 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5672 8 8 0.2897 4.4406 -1.7316 9 6 2.1228 5.9216 -1.6062 10 6 1.0639 6.9631 -1.8608 11 6 0.3732 7.5886 -0.8373 12 6 -0.5301 8.4859 -1.2349 13 16 -0.5397 8.5745 -2.9916 14 6 0.7251 7.3562 -3.0897 15 6 3.6953 3.5887 -1.1499 16 6 4.0735 2.8881 0.1586 17 6 3.5653 1.4449 0.1256 18 1 3.8546 0.9369 1.0455 19 7 4.1506 0.7474 -1.0220 20 6 5.3883 0.1711 -0.9145 21 1 5.9328 0.2312 0.0161 22 6 5.9427 -0.4902 -2.0017 23 7 5.2791 -0.5630 -3.1361 24 14 7.6312 -1.2756 -1.8553 25 1 7.9935 -1.9146 -3.1459 26 1 8.6344 -0.2336 -1.5195 27 1 7.6077 -2.3037 -0.7840 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.9964 1.5377 -2.1549 34 1 0.5531 2.2138 -1.3597 35 1 2.6082 6.1234 -0.6512 36 1 2.8642 5.9540 -2.4045 37 1 0.5520 7.3667 0.2045 38 1 -1.1592 9.0689 -0.5787 39 1 1.1592 6.9818 -4.0049 40 1 4.2209 3.1189 -1.9812 41 1 3.9670 4.6426 -1.0919 42 1 3.6191 3.4147 0.9979 43 1 5.1577 2.8895 0.2714 44 1 3.6616 0.6937 -1.8580 45 1 5.6668 -1.0248 -3.8960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037778079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:52 Heat of formation + Delta-G solvation = 2.794235 kcal Electronic energy + Delta-G solvation = -25611.762525 eV Core-core repulsion = 22141.834881 eV Total energy + Delta-G solvation = -3469.927645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18644 -38.48216 -37.23568 -34.41230 -33.75417 -31.70754 -31.30387 -29.44229 -28.82683 -27.74636 -24.92843 -23.84303 -23.49296 -23.05087 -20.79650 -19.84949 -18.73456 -18.15904 -17.61022 -17.38500 -16.80941 -15.82362 -15.36738 -14.91729 -14.63489 -14.37147 -13.99573 -13.64125 -13.43876 -13.28547 -13.17951 -13.06836 -12.82327 -12.64614 -12.42652 -12.27307 -12.17841 -11.75203 -11.66802 -11.35377 -11.08865 -10.98228 -10.86492 -10.81152 -10.68657 -10.29894 -10.26396 -10.19867 -9.78659 -9.56305 -9.53940 -8.93621 -8.83632 -8.42163 -8.18833 -6.99271 -5.80641 -3.09179 0.96354 1.60767 1.91339 2.59321 2.88304 3.40260 3.41922 3.45751 3.46467 4.55775 4.73480 4.80743 4.89720 5.13440 5.18369 5.29159 5.31986 5.34668 5.43852 5.50802 5.55467 5.57562 5.59626 5.70697 5.80833 5.83956 5.92575 5.95150 6.10208 6.16130 6.20491 6.31395 6.36054 6.38114 6.41457 6.41552 6.57257 6.64779 6.71073 6.77770 6.94553 7.02550 7.66311 7.75904 8.37914 8.45295 9.49477 10.06353 10.41412 11.41612 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.003101 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.670157 B = 9027.907797 C = 9842.541052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.119 3.881 6 N -0.602 5.602 7 C 0.514 3.486 8 O -0.545 6.545 9 C -0.082 4.082 10 C -0.080 4.080 11 C -0.118 4.118 12 C -0.215 4.215 13 S 0.085 5.915 14 C -0.197 4.197 15 C 0.112 3.888 16 C -0.150 4.150 17 C 0.179 3.821 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.292 1.292 26 H -0.287 1.287 27 H -0.287 1.287 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 15.490 4.560 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.334 5.334 7 C 0.301 3.699 8 O -0.423 6.423 9 C -0.125 4.125 10 C -0.092 4.092 11 C -0.149 4.149 12 C -0.350 4.350 13 S 0.348 5.652 14 C -0.333 4.333 15 C -0.010 4.010 16 C -0.191 4.191 17 C 0.068 3.932 18 H 0.068 0.932 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.214 1.214 27 H -0.214 1.214 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.164 16.198 3.426 19.427 hybrid contribution 1.780 -1.358 0.822 2.385 sum -8.384 14.840 4.248 17.566 Atomic orbital electron populations 1.21853 0.96839 1.01002 1.01341 1.21416 0.94254 0.95801 1.03330 1.21741 0.97338 0.96097 0.97080 0.91666 1.21657 0.98758 0.81719 0.98164 1.48136 1.08664 1.06513 1.70127 1.20400 0.86969 0.85754 0.76756 1.90673 1.14895 1.86563 1.50207 1.20411 0.96844 0.90476 1.04741 1.18387 0.99756 0.98726 0.92342 1.20020 0.97254 0.97202 1.00387 1.25483 1.05732 1.06295 0.97517 1.84137 1.37579 1.40023 1.03422 1.25401 1.03055 1.03580 1.01260 1.21745 0.79238 1.00004 1.00024 1.22522 1.01778 0.99332 0.95494 1.20216 0.89754 0.90632 0.92581 0.93202 1.42473 1.19068 1.63971 1.10584 1.19168 0.93639 1.27063 0.97048 0.91334 1.24698 0.98527 1.01456 0.96034 1.69640 1.38171 1.48010 1.02234 0.86320 0.84378 0.79198 0.76563 1.21824 1.21368 1.21392 0.93419 0.92792 0.93185 0.90514 0.92070 0.90886 0.89685 0.87998 0.88005 0.84443 0.82034 0.82011 0.89682 0.91196 0.93334 0.90757 0.78083 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.65 2.14 -90.50 -0.19 -1.85 16 4 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 2.00 5.03 -3.71 -0.02 1.99 16 6 N -0.60 -9.43 2.97 -172.79 -0.51 -9.94 16 7 C 0.51 7.96 7.69 -10.99 -0.08 7.88 16 8 O -0.55 -10.26 15.45 5.56 0.09 -10.18 16 9 C -0.08 -0.96 4.30 -29.04 -0.12 -1.09 16 10 C -0.08 -0.97 4.29 -106.25 -0.46 -1.43 16 11 C -0.12 -1.34 9.98 -41.21 -0.41 -1.76 16 12 C -0.22 -2.21 11.23 29.04 0.33 -1.89 16 13 S 0.09 0.89 23.34 -107.50 -2.51 -1.62 16 14 C -0.20 -2.32 10.98 29.04 0.32 -2.01 16 15 C 0.11 1.68 6.08 -3.73 -0.02 1.66 16 16 C -0.15 -2.36 5.78 -26.62 -0.15 -2.51 16 17 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -16.14 3.72 -53.39 -0.20 -16.34 16 20 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 24 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 34 H 0.08 1.46 5.73 -51.93 -0.30 1.17 16 35 H 0.10 0.99 7.68 -51.93 -0.40 0.59 16 36 H 0.10 1.04 7.92 -51.93 -0.41 0.63 16 37 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.08 1.53 7.74 -51.93 -0.40 1.12 16 41 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.38 9.31 5.94 -40.82 -0.24 9.06 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -29.97 368.95 -9.81 -39.78 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.92 Total: 10.48 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.02 Total: -8.22 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.01 Total: -52.30 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.97 -9.81 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.578 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds