Wall clock time and date at job start Tue Mar 31 2020 13:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 H 1.08994 * 109.50093 * 304.93690 * 3 2 1 5 5 C 1.53191 * 109.49718 * 65.00516 * 3 2 1 6 6 N 1.46925 * 108.77902 * 174.58881 * 5 3 2 7 7 C 1.34778 * 120.63358 * 126.36757 * 6 5 3 8 8 O 1.21276 * 119.99929 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99917 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.46887 * 179.97438 * 9 7 6 11 11 C 1.38427 * 122.53904 * 89.99758 * 10 9 7 12 12 C 1.33394 * 114.91995 * 179.97438 * 11 10 9 13 13 S 1.75878 * 109.59471 * 0.02562 * 12 11 10 14 14 C 1.33386 * 122.54302 * 269.97239 * 10 9 7 15 15 C 1.46929 * 118.73310 * 306.63755 * 6 5 3 16 16 C 1.52757 * 109.00790 * 53.31338 * 15 6 5 17 17 C 1.53040 * 109.38279 * 305.58293 * 16 15 6 18 18 H 1.09003 * 109.44814 * 181.25386 * 17 16 15 19 19 N 1.46498 * 109.46269 * 301.22490 * 17 16 15 20 20 C 1.36941 * 119.99470 * 275.06958 * 19 17 16 21 21 H 1.08002 * 120.00464 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99672 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00133 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99898 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47050 * 59.99557 * 24 22 20 26 26 H 1.48498 * 109.47105 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46981 * 299.99601 * 24 22 20 28 28 H 1.08992 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46987 * 300.00028 * 1 2 3 30 30 H 1.08998 * 109.47265 * 59.99443 * 1 2 3 31 31 H 1.09000 * 109.47388 * 240.00330 * 2 1 3 32 32 H 1.08996 * 109.47678 * 120.00221 * 2 1 3 33 33 H 1.08998 * 109.59231 * 54.79383 * 5 3 2 34 34 H 1.09005 * 109.70292 * 294.44487 * 5 3 2 35 35 H 1.08995 * 109.47317 * 59.99257 * 9 7 6 36 36 H 1.09005 * 109.47020 * 299.99415 * 9 7 6 37 37 H 1.08000 * 122.54454 * 0.24915 * 11 10 9 38 38 H 1.07996 * 125.20125 * 179.97438 * 12 11 10 39 39 H 1.08002 * 125.19644 * 0.02562 * 14 10 9 40 40 H 1.09006 * 109.58363 * 173.14309 * 15 6 5 41 41 H 1.08996 * 109.59113 * 293.56711 * 15 6 5 42 42 H 1.09004 * 109.56353 * 185.55265 * 16 15 6 43 43 H 1.09002 * 109.36422 * 65.49538 * 16 15 6 44 44 H 0.96997 * 120.00162 * 95.06429 * 19 17 16 45 45 H 0.97001 * 119.99939 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9817 -0.8423 5 6 1.6352 2.1279 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4815 4.5580 1.5630 8 8 0.2850 4.4422 1.7235 9 6 2.1184 5.9233 1.6013 10 6 1.0588 6.9649 1.8526 11 6 0.7005 7.3701 3.1268 12 6 -0.2538 8.3010 3.1730 13 16 -0.7542 8.7144 1.5384 14 6 0.3954 7.5666 0.8642 15 6 3.6914 3.5903 1.1468 16 6 4.0741 2.8880 -0.1547 17 6 3.5656 1.4449 -0.1217 18 1 3.8574 0.9362 -1.0405 19 7 4.1480 0.7484 1.0281 20 6 5.3861 0.1727 0.9244 21 1 5.9331 0.2317 -0.0049 22 6 5.9378 -0.4878 2.0137 23 7 5.2710 -0.5602 3.1462 24 14 7.6264 -1.2738 1.8722 25 1 8.6308 -0.2323 1.5377 26 1 7.9859 -1.9106 3.1646 27 1 7.6052 -2.3029 0.8018 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.9908 1.5397 2.1547 34 1 0.5498 2.2172 1.3565 35 1 2.6056 6.1238 0.6472 36 1 2.8582 5.9568 2.4012 37 1 1.1619 6.9667 4.0161 38 1 -0.6580 8.7339 4.0761 39 1 0.5416 7.3775 -0.1891 40 1 3.9624 4.6444 1.0849 41 1 4.2183 3.1238 1.9791 42 1 5.1585 2.8891 -0.2649 43 1 3.6219 3.4139 -0.9956 44 1 3.6566 0.6952 1.8627 45 1 5.6566 -1.0214 3.9075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037778080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:58 Heat of formation + Delta-G solvation = 2.787102 kcal Electronic energy + Delta-G solvation = -25611.425190 eV Core-core repulsion = 22141.497236 eV Total energy + Delta-G solvation = -3469.927954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19247 -38.48667 -37.23668 -34.41718 -33.75710 -31.71500 -31.30626 -29.45819 -28.83275 -27.74381 -24.93149 -23.84127 -23.49457 -23.04651 -20.79906 -19.83883 -18.73781 -18.20114 -17.58271 -17.36745 -16.80577 -15.87211 -15.30479 -15.01117 -14.57189 -14.35422 -14.00279 -13.60531 -13.51765 -13.27988 -13.20057 -13.08431 -12.73082 -12.69338 -12.42671 -12.28808 -12.17640 -11.74237 -11.68391 -11.35367 -11.08701 -10.97620 -10.86728 -10.81140 -10.69067 -10.29979 -10.26443 -10.19921 -9.78733 -9.56423 -9.54155 -8.93743 -8.83498 -8.42232 -8.19049 -6.99387 -5.80697 -3.09198 0.96191 1.60580 1.90991 2.59665 2.88191 3.40228 3.41832 3.45722 3.46430 4.55723 4.73943 4.79708 4.89300 5.14115 5.18668 5.29670 5.31096 5.34635 5.41961 5.52227 5.55426 5.57570 5.60211 5.70595 5.81229 5.83864 5.92148 5.96378 6.10126 6.16154 6.20500 6.30749 6.36211 6.39288 6.40775 6.41489 6.57208 6.64537 6.70970 6.77581 6.94487 7.02479 7.66240 7.75766 8.37825 8.45156 9.49416 10.06271 10.41391 11.41568 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.003093 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.370062 B = 9051.626470 C = 9866.850560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.119 3.881 6 N -0.602 5.602 7 C 0.514 3.486 8 O -0.545 6.545 9 C -0.083 4.083 10 C -0.078 4.078 11 C -0.118 4.118 12 C -0.214 4.214 13 S 0.083 5.917 14 C -0.199 4.199 15 C 0.112 3.888 16 C -0.150 4.150 17 C 0.179 3.821 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 15.447 -4.349 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.334 5.334 7 C 0.301 3.699 8 O -0.423 6.423 9 C -0.125 4.125 10 C -0.091 4.091 11 C -0.149 4.149 12 C -0.349 4.349 13 S 0.347 5.653 14 C -0.334 4.334 15 C -0.010 4.010 16 C -0.192 4.192 17 C 0.068 3.932 18 H 0.068 0.932 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.353 16.319 -4.897 19.936 hybrid contribution 2.017 -1.515 0.829 2.655 sum -8.337 14.803 -4.067 17.469 Atomic orbital electron populations 1.21849 0.96835 1.01006 1.01344 1.21416 0.94259 0.95793 1.03334 1.21740 0.97329 0.96103 0.97080 0.91682 1.21662 0.98747 0.81716 0.98179 1.48136 1.08653 1.06508 1.70136 1.20396 0.86964 0.85753 0.76754 1.90673 1.14852 1.86565 1.50240 1.20413 0.96883 0.90472 1.04720 1.18394 0.99618 0.98542 0.92540 1.20053 0.98850 0.98087 0.97864 1.25487 1.04025 1.05238 1.00157 1.84115 1.40468 1.41432 0.99318 1.25363 1.01917 1.03164 1.02985 1.21659 0.79276 0.99990 1.00083 1.22452 1.01797 0.99349 0.95560 1.20214 0.89764 0.90633 0.92565 0.93203 1.42472 1.18998 1.64022 1.10594 1.19170 0.93596 1.27117 0.97053 0.91334 1.24700 0.98522 1.01451 0.96040 1.69638 1.38123 1.48031 1.02255 0.86320 0.84372 0.79204 0.76562 1.21370 1.21822 1.21387 0.93180 0.92793 0.93417 0.92075 0.90499 0.90872 0.89684 0.88098 0.87889 0.84325 0.81998 0.82112 0.91213 0.89688 0.90712 0.93385 0.78076 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.65 2.14 -90.50 -0.19 -1.85 16 4 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 2.00 5.03 -3.71 -0.02 1.98 16 6 N -0.60 -9.43 2.98 -173.03 -0.52 -9.94 16 7 C 0.51 7.96 7.69 -10.98 -0.08 7.88 16 8 O -0.55 -10.26 15.45 5.56 0.09 -10.17 16 9 C -0.08 -0.97 4.30 -29.04 -0.12 -1.09 16 10 C -0.08 -0.96 4.29 -106.25 -0.46 -1.41 16 11 C -0.12 -1.38 9.98 -41.20 -0.41 -1.79 16 12 C -0.21 -2.24 11.23 29.04 0.33 -1.92 16 13 S 0.08 0.86 23.34 -107.50 -2.51 -1.65 16 14 C -0.20 -2.28 10.98 29.04 0.32 -1.96 16 15 C 0.11 1.68 6.06 -3.93 -0.02 1.66 16 16 C -0.15 -2.37 5.76 -26.83 -0.15 -2.52 16 17 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -16.14 3.72 -53.38 -0.20 -16.34 16 20 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.74 13.06 55.49 0.72 -26.01 16 24 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 33 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16 34 H 0.08 1.46 5.73 -51.93 -0.30 1.17 16 35 H 0.10 0.98 7.66 -51.93 -0.40 0.58 16 36 H 0.10 1.05 7.94 -51.93 -0.41 0.64 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.07 0.82 5.94 -51.93 -0.31 0.52 16 41 H 0.08 1.52 7.74 -51.93 -0.40 1.12 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.38 9.31 5.94 -40.82 -0.24 9.06 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -29.96 368.91 -9.82 -39.78 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.92 Total: 10.53 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.02 Total: -8.24 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.01 Total: -52.29 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.96 -9.82 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.565 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds