Wall clock time and date at job start Tue Mar 31 2020 13:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 H 1.08994 * 109.50093 * 304.93690 * 3 2 1 5 5 C 1.53191 * 109.49718 * 65.00516 * 3 2 1 6 6 N 1.46925 * 108.77902 * 174.58881 * 5 3 2 7 7 C 1.34778 * 120.63358 * 126.36757 * 6 5 3 8 8 O 1.21276 * 119.99929 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99917 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.46887 * 179.97438 * 9 7 6 11 11 C 1.38427 * 122.53904 * 89.99758 * 10 9 7 12 12 C 1.33394 * 114.91995 * 179.97438 * 11 10 9 13 13 S 1.75878 * 109.59471 * 0.02562 * 12 11 10 14 14 C 1.33386 * 122.54302 * 269.97239 * 10 9 7 15 15 C 1.46929 * 118.73310 * 306.63755 * 6 5 3 16 16 C 1.52757 * 109.00790 * 53.31338 * 15 6 5 17 17 C 1.53040 * 109.38279 * 305.58293 * 16 15 6 18 18 H 1.09003 * 109.44814 * 181.25386 * 17 16 15 19 19 N 1.46498 * 109.46269 * 301.22490 * 17 16 15 20 20 C 1.36941 * 119.99470 * 275.06958 * 19 17 16 21 21 H 1.08002 * 120.00464 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99672 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00133 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99898 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47050 * 59.99557 * 24 22 20 26 26 H 1.48498 * 109.47105 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46981 * 299.99601 * 24 22 20 28 28 H 1.08992 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46987 * 300.00028 * 1 2 3 30 30 H 1.08998 * 109.47265 * 59.99443 * 1 2 3 31 31 H 1.09000 * 109.47388 * 240.00330 * 2 1 3 32 32 H 1.08996 * 109.47678 * 120.00221 * 2 1 3 33 33 H 1.08998 * 109.59231 * 54.79383 * 5 3 2 34 34 H 1.09005 * 109.70292 * 294.44487 * 5 3 2 35 35 H 1.08995 * 109.47317 * 59.99257 * 9 7 6 36 36 H 1.09005 * 109.47020 * 299.99415 * 9 7 6 37 37 H 1.08000 * 122.54454 * 0.24915 * 11 10 9 38 38 H 1.07996 * 125.20125 * 179.97438 * 12 11 10 39 39 H 1.08002 * 125.19644 * 0.02562 * 14 10 9 40 40 H 1.09006 * 109.58363 * 173.14309 * 15 6 5 41 41 H 1.08996 * 109.59113 * 293.56711 * 15 6 5 42 42 H 1.09004 * 109.56353 * 185.55265 * 16 15 6 43 43 H 1.09002 * 109.36422 * 65.49538 * 16 15 6 44 44 H 0.96997 * 120.00162 * 95.06429 * 19 17 16 45 45 H 0.97001 * 119.99939 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9817 -0.8423 5 6 1.6352 2.1279 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4815 4.5580 1.5630 8 8 0.2850 4.4422 1.7235 9 6 2.1184 5.9233 1.6013 10 6 1.0588 6.9649 1.8526 11 6 0.7005 7.3701 3.1268 12 6 -0.2538 8.3010 3.1730 13 16 -0.7542 8.7144 1.5384 14 6 0.3954 7.5666 0.8642 15 6 3.6914 3.5903 1.1468 16 6 4.0741 2.8880 -0.1547 17 6 3.5656 1.4449 -0.1217 18 1 3.8574 0.9362 -1.0405 19 7 4.1480 0.7484 1.0281 20 6 5.3861 0.1727 0.9244 21 1 5.9331 0.2317 -0.0049 22 6 5.9378 -0.4878 2.0137 23 7 5.2710 -0.5602 3.1462 24 14 7.6264 -1.2738 1.8722 25 1 8.6308 -0.2323 1.5377 26 1 7.9859 -1.9106 3.1646 27 1 7.6052 -2.3029 0.8018 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.9908 1.5397 2.1547 34 1 0.5498 2.2172 1.3565 35 1 2.6056 6.1238 0.6472 36 1 2.8582 5.9568 2.4012 37 1 1.1619 6.9667 4.0161 38 1 -0.6580 8.7339 4.0761 39 1 0.5416 7.3775 -0.1891 40 1 3.9624 4.6444 1.0849 41 1 4.2183 3.1238 1.9791 42 1 5.1585 2.8891 -0.2649 43 1 3.6219 3.4139 -0.9956 44 1 3.6566 0.6952 1.8627 45 1 5.6566 -1.0214 3.9075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037778080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:57 Heat of formation + Delta-G solvation = -13.122784 kcal Electronic energy + Delta-G solvation = -25612.115094 eV Core-core repulsion = 22141.497236 eV Total energy + Delta-G solvation = -3470.617858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43744 -39.63036 -38.35696 -35.83782 -35.35187 -33.37772 -32.25965 -30.98557 -30.10236 -28.81930 -26.32458 -25.38814 -25.00169 -23.97981 -22.13191 -21.03178 -19.82672 -19.42243 -19.19422 -18.43154 -18.08240 -17.02928 -16.63276 -16.35239 -15.94277 -15.84138 -15.51328 -14.98063 -14.75706 -14.68157 -14.40568 -14.11297 -13.89524 -13.74289 -13.67851 -13.43965 -13.17421 -13.01876 -12.80671 -12.79564 -12.67652 -12.52624 -12.33197 -12.15563 -12.06184 -11.81612 -11.66383 -11.56023 -11.43275 -11.09506 -10.88817 -10.71457 -9.66620 -9.53533 -9.24649 -8.89320 -7.86456 -5.12408 0.13414 0.81152 1.09562 1.51122 1.52119 1.57915 1.67964 1.68802 2.24058 2.61594 3.47239 3.65297 3.83111 3.89594 3.96968 4.06660 4.09282 4.12595 4.31155 4.37381 4.41590 4.45883 4.49426 4.54097 4.62134 4.63922 4.73041 4.78155 4.88493 4.92130 5.02799 5.07766 5.13965 5.18660 5.24830 5.28738 5.35572 5.41781 5.49174 5.53333 5.56492 5.62977 5.71269 6.35206 6.53681 7.23042 7.42819 8.19817 8.43077 9.36635 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.003093 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.370062 B = 9051.626470 C = 9866.850560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.126 3.874 6 N -0.602 5.602 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.076 4.076 10 C -0.096 4.096 11 C -0.140 4.140 12 C -0.217 4.217 13 S 0.100 5.900 14 C -0.210 4.210 15 C 0.118 3.882 16 C -0.143 4.143 17 C 0.171 3.829 18 H 0.045 0.955 19 N -0.725 5.725 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.073 4.073 23 N -0.969 5.969 24 Si 0.963 3.037 25 H -0.278 1.278 26 H -0.303 1.303 27 H -0.283 1.283 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 17.334 -6.093 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.110 4.110 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.334 5.334 7 C 0.302 3.698 8 O -0.461 6.461 9 C -0.118 4.118 10 C -0.109 4.109 11 C -0.171 4.171 12 C -0.352 4.352 13 S 0.363 5.637 14 C -0.346 4.346 15 C -0.004 4.004 16 C -0.184 4.184 17 C 0.063 3.937 18 H 0.063 0.937 19 N -0.366 5.366 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.265 4.265 23 N -0.621 5.621 24 Si 0.793 3.207 25 H -0.204 1.204 26 H -0.230 1.230 27 H -0.210 1.210 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.200 0.800 39 H 0.192 0.808 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.206 0.794 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.364 18.238 -6.696 22.020 hybrid contribution 1.923 -2.053 1.318 3.107 sum -8.441 16.185 -5.378 19.030 Atomic orbital electron populations 1.21777 0.94871 1.01854 1.01780 1.21344 0.95974 0.95440 1.01667 1.21640 0.95920 0.96251 0.97236 0.89780 1.21443 0.98407 0.82422 0.97448 1.48183 1.08954 1.06147 1.70145 1.21078 0.86525 0.86795 0.75359 1.90655 1.16585 1.87188 1.51721 1.20450 0.96936 0.87621 1.06763 1.18545 1.00324 0.99073 0.92929 1.20256 0.99745 0.98932 0.98132 1.25831 1.03444 1.04721 1.01175 1.84050 1.39829 1.40776 0.99048 1.25652 1.01944 1.03271 1.03718 1.21631 0.78425 1.02042 0.98349 1.22325 1.01493 0.97527 0.97011 1.20456 0.90936 0.91768 0.90566 0.93664 1.42587 1.18178 1.64372 1.11438 1.19531 0.94288 1.25211 0.96723 0.90684 1.25374 1.01760 1.03264 0.96132 1.69799 1.39585 1.49844 1.02846 0.85367 0.81067 0.78440 0.75797 1.20436 1.23026 1.21009 0.92219 0.93388 0.91829 0.91962 0.93843 0.93796 0.90088 0.85400 0.86301 0.83915 0.79951 0.80816 0.87158 0.93076 0.91320 0.90416 0.79368 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.67 71.98 0.70 -3.17 16 2 C -0.11 -3.38 5.19 30.59 0.16 -3.22 16 3 C -0.09 -2.84 2.14 -10.71 -0.02 -2.87 16 4 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 5 C 0.13 4.24 5.03 86.36 0.43 4.68 16 6 N -0.60 -18.17 2.98 -819.73 -2.44 -20.61 16 7 C 0.51 15.08 7.69 87.66 0.67 15.75 16 8 O -0.58 -21.40 15.45 -3.02 -0.05 -21.44 16 9 C -0.08 -1.57 4.30 29.10 0.13 -1.45 16 10 C -0.10 -2.16 4.29 -20.92 -0.09 -2.25 16 11 C -0.14 -3.08 9.98 21.22 0.21 -2.87 16 12 C -0.22 -4.17 11.23 66.72 0.75 -3.42 16 13 S 0.10 1.86 23.34 -56.49 -1.32 0.54 16 14 C -0.21 -4.37 10.98 66.72 0.73 -3.64 16 15 C 0.12 3.32 6.06 86.22 0.52 3.84 16 16 C -0.14 -4.16 5.76 30.53 0.18 -3.99 16 17 C 0.17 6.05 2.53 45.02 0.11 6.16 16 18 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 19 N -0.72 -32.99 3.72 -322.79 -1.20 -34.19 16 20 C -0.23 -11.57 9.93 84.03 0.83 -10.74 16 21 H 0.08 3.70 7.83 -2.91 -0.02 3.67 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 23 N -0.97 -57.36 13.06 21.65 0.28 -57.07 16 24 Si 0.96 44.71 29.55 68.60 2.03 46.74 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.33 6.70 -2.39 -0.02 1.31 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.67 7.69 -2.39 -0.02 1.65 16 33 H 0.04 1.74 6.64 -2.39 -0.02 1.72 16 34 H 0.08 2.80 5.73 -2.38 -0.01 2.79 16 35 H 0.13 1.95 7.66 -2.39 -0.02 1.93 16 36 H 0.12 2.09 7.94 -2.38 -0.02 2.07 16 37 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.11 2.21 5.94 -2.38 -0.01 2.20 16 41 H 0.05 1.82 7.74 -2.39 -0.02 1.80 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.37 18.76 5.94 -92.71 -0.55 18.21 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -65.75 368.91 3.52 -62.23 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.44 Total: 34.53 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 5.78 Total: -10.72 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.36 Total: -111.87 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -65.75 3.52 -62.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.105 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds