Wall clock time and date at job start Tue Mar 31 2020 13:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 H 1.08996 * 109.52430 * 305.07910 * 3 2 1 5 5 C 1.53187 * 109.49861 * 65.16360 * 3 2 1 6 6 N 1.46918 * 108.77533 * 174.58622 * 5 3 2 7 7 C 1.34785 * 120.63251 * 126.41150 * 6 5 3 8 8 O 1.21283 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00126 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47367 * 179.97438 * 9 7 6 11 11 C 1.33394 * 125.19976 * 89.71443 * 10 9 7 12 12 C 1.38426 * 114.91750 * 179.86167 * 11 10 9 13 13 C 1.33389 * 114.92119 * 0.43437 * 12 11 10 14 14 S 1.75880 * 125.20397 * 270.02639 * 10 9 7 15 15 C 1.46925 * 118.73968 * 306.38910 * 6 5 3 16 16 C 1.53188 * 108.77613 * 53.60879 * 15 6 5 17 17 C 1.53042 * 109.49150 * 184.99699 * 3 2 1 18 18 H 1.08999 * 109.46023 * 58.67873 * 17 3 2 19 19 N 1.46492 * 109.46658 * 298.70154 * 17 3 2 20 20 C 1.36935 * 120.00376 * 155.00230 * 19 17 3 21 21 H 1.08003 * 119.99724 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99887 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.09002 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47029 * 300.00177 * 1 2 3 30 30 H 1.08996 * 109.47063 * 60.00219 * 1 2 3 31 31 H 1.08999 * 109.47029 * 239.99823 * 2 1 3 32 32 H 1.09005 * 109.46944 * 119.99531 * 2 1 3 33 33 H 1.09007 * 109.58824 * 294.36961 * 5 3 2 34 34 H 1.08996 * 109.58964 * 54.65095 * 5 3 2 35 35 H 1.09009 * 109.47189 * 300.00112 * 9 7 6 36 36 H 1.08996 * 109.47364 * 59.99704 * 9 7 6 37 37 H 1.07997 * 122.54184 * 0.02562 * 11 10 9 38 38 H 1.08001 * 122.54090 * 180.20227 * 12 11 10 39 39 H 1.08002 * 125.20860 * 179.79647 * 13 12 11 40 40 H 1.08999 * 109.58665 * 173.39949 * 15 6 5 41 41 H 1.09007 * 109.58384 * 293.67864 * 15 6 5 42 42 H 1.09002 * 109.49733 * 185.41830 * 16 15 6 43 43 H 1.08993 * 109.50070 * 65.31666 * 16 15 6 44 44 H 0.97009 * 119.99477 * 335.00815 * 19 17 3 45 45 H 0.97006 * 119.99732 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6386 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5681 8 8 0.2898 4.4405 1.7333 9 6 2.1226 5.9217 1.6059 10 6 1.0639 6.9631 1.8619 11 6 0.6778 7.3871 3.0663 12 6 -0.3119 8.3548 3.0542 13 6 -0.7359 8.7100 1.8404 14 16 0.1429 7.7996 0.6188 15 6 3.6952 3.5888 1.1498 16 6 4.0737 2.8882 -0.1589 17 6 3.5653 1.4450 -0.1257 18 1 3.8546 0.9370 -1.0456 19 7 4.1508 0.7475 1.0218 20 6 5.3886 0.1718 0.9145 21 1 5.9334 0.2323 -0.0160 22 6 5.9431 -0.4895 2.0017 23 7 7.1331 -1.0424 1.8987 24 14 5.0011 -0.5935 3.6115 25 1 4.1582 -1.8161 3.6137 26 1 4.1357 0.6046 3.7569 27 1 5.9604 -0.6515 4.7436 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.5532 2.2162 1.3585 34 1 1.9943 1.5364 2.1548 35 1 2.8652 5.9543 2.4032 36 1 2.6066 6.1235 0.6503 37 1 1.1069 7.0064 3.9813 38 1 -0.7131 8.7867 3.9592 39 1 -1.5015 9.4447 1.6385 40 1 3.9669 4.6428 1.0919 41 1 4.2209 3.1212 1.9824 42 1 5.1578 2.8894 -0.2719 43 1 3.6193 3.4147 -0.9981 44 1 3.6615 0.6935 1.8578 45 1 7.5204 -1.5048 2.6584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037778896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:22 Heat of formation + Delta-G solvation = 6.618357 kcal Electronic energy + Delta-G solvation = -25676.130643 eV Core-core repulsion = 22206.368825 eV Total energy + Delta-G solvation = -3469.761818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27798 -38.36164 -37.47483 -34.59412 -33.90377 -32.31322 -31.78302 -29.87619 -28.98985 -27.30614 -25.05925 -23.99172 -23.30987 -23.05751 -20.89684 -19.94157 -19.32032 -18.30919 -17.93044 -17.28955 -16.90562 -15.86186 -15.58513 -15.25381 -14.78428 -14.49123 -14.13475 -13.76351 -13.65731 -13.40058 -13.31907 -13.07687 -12.77454 -12.74080 -12.52241 -12.48390 -12.40179 -11.89904 -11.74729 -11.55705 -11.30198 -11.11811 -10.98308 -10.87672 -10.82819 -10.41153 -10.39444 -10.24318 -9.83872 -9.73699 -9.59131 -8.99328 -8.75451 -8.54808 -8.37918 -7.32169 -5.82616 -3.17962 0.86965 1.52436 1.89075 2.61359 2.70464 3.19477 3.30659 3.34158 3.40947 4.48130 4.52882 4.62320 4.90937 4.96641 4.99131 5.10148 5.18177 5.24947 5.29543 5.35766 5.45587 5.47191 5.50669 5.54496 5.61785 5.64221 5.75402 5.87251 5.98587 6.00682 6.03961 6.15369 6.17721 6.24833 6.28890 6.36105 6.42206 6.49192 6.53399 6.64004 6.73468 6.86617 7.56230 7.93760 8.26608 8.36581 9.14716 9.87380 10.07198 11.35789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003463 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.745092 B = 8082.755636 C = 8640.865880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.072 0.928 5 C 0.118 3.882 6 N -0.604 5.604 7 C 0.514 3.486 8 O -0.540 6.540 9 C -0.072 4.072 10 C -0.151 4.151 11 C -0.132 4.132 12 C -0.132 4.132 13 C -0.218 4.218 14 S 0.105 5.895 15 C 0.110 3.890 16 C -0.150 4.150 17 C 0.185 3.815 18 H 0.060 0.940 19 N -0.744 5.744 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.878 3.122 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.291 1.291 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 16.711 -2.124 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.004 4.004 6 N -0.337 5.337 7 C 0.301 3.699 8 O -0.417 6.417 9 C -0.113 4.113 10 C -0.268 4.268 11 C -0.162 4.162 12 C -0.162 4.162 13 C -0.354 4.354 14 S 0.369 5.631 15 C -0.012 4.012 16 C -0.191 4.191 17 C 0.075 3.925 18 H 0.078 0.922 19 N -0.387 5.387 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.708 3.292 25 H -0.210 1.210 26 H -0.205 1.205 27 H -0.218 1.218 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.546 16.516 -3.691 21.677 hybrid contribution -0.396 -0.119 2.839 2.869 sum -13.943 16.398 -0.852 21.541 Atomic orbital electron populations 1.21859 0.96605 1.01182 1.01496 1.21432 0.94501 0.95682 1.03291 1.21803 0.97414 0.96216 0.97215 0.90992 1.21666 0.99104 0.81744 0.97934 1.48147 1.08772 1.06449 1.70299 1.20363 0.87023 0.85691 0.76842 1.90690 1.14737 1.86456 1.49853 1.20212 0.96169 0.89809 1.05145 1.23838 1.03472 1.03190 0.96337 1.20066 0.99325 0.99135 0.97674 1.20113 0.98784 0.99332 0.98006 1.25565 1.06885 1.06895 0.96056 1.84186 1.33596 1.35135 1.10187 1.21788 0.79012 1.00387 1.00058 1.22503 1.02348 0.98846 0.95399 1.20187 0.89411 0.90678 0.92247 0.92160 1.42846 1.19744 1.65810 1.10335 1.19050 0.92122 1.26661 0.99207 0.89157 1.24633 0.96451 1.00287 0.97508 1.69692 1.16262 1.41186 1.30930 0.86672 0.79407 0.77840 0.85235 1.21035 1.20533 1.21765 0.93029 0.92871 0.93107 0.91476 0.91188 0.89289 0.91671 0.86994 0.87773 0.84506 0.84441 0.82076 0.90864 0.90079 0.90130 0.92886 0.80593 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.68 37.16 0.36 -1.59 16 2 C -0.11 -1.64 5.19 -26.73 -0.14 -1.78 16 3 C -0.11 -1.60 2.14 -90.50 -0.19 -1.79 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.84 5.03 -3.72 -0.02 1.82 16 6 N -0.60 -8.92 2.97 -172.78 -0.51 -9.43 16 7 C 0.51 7.56 7.69 -10.98 -0.08 7.48 16 8 O -0.54 -9.66 15.45 5.56 0.09 -9.58 16 9 C -0.07 -0.80 4.54 -29.04 -0.13 -0.94 16 10 C -0.15 -1.79 5.00 -36.00 -0.18 -1.97 16 11 C -0.13 -1.50 10.05 -41.21 -0.41 -1.92 16 12 C -0.13 -1.34 10.18 -41.21 -0.42 -1.76 16 13 C -0.22 -2.15 11.23 29.04 0.33 -1.82 16 14 S 0.11 1.16 23.33 -107.50 -2.51 -1.35 16 15 C 0.11 1.55 6.08 -3.71 -0.02 1.52 16 16 C -0.15 -2.25 5.78 -26.61 -0.15 -2.40 16 17 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 18 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 19 N -0.74 -15.76 3.53 -53.39 -0.19 -15.95 16 20 C -0.24 -6.24 10.41 -15.06 -0.16 -6.40 16 21 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -28.20 13.97 55.49 0.78 -27.43 16 24 Si 0.88 21.29 27.73 -169.99 -4.71 16.57 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 33 H 0.09 1.42 5.73 -51.93 -0.30 1.12 16 34 H 0.07 1.11 6.64 -51.93 -0.35 0.77 16 35 H 0.11 1.05 7.94 -51.92 -0.41 0.64 16 36 H 0.10 0.98 7.69 -51.93 -0.40 0.58 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 41 H 0.08 1.33 7.75 -51.93 -0.40 0.93 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.36 7.72 3.81 -40.82 -0.16 7.57 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.25 366.10 -9.93 -41.18 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.88 Total: 8.90 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.50 Total: -8.44 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.07 Total: -52.81 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.25 -9.93 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.796 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds