Wall clock time and date at job start Tue Mar 31 2020 13:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 H 1.08996 * 109.52430 * 305.07910 * 3 2 1 5 5 C 1.53187 * 109.49861 * 65.16360 * 3 2 1 6 6 N 1.46918 * 108.77533 * 174.58622 * 5 3 2 7 7 C 1.34785 * 120.63251 * 126.41150 * 6 5 3 8 8 O 1.21283 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00126 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47367 * 179.97438 * 9 7 6 11 11 C 1.33394 * 125.19976 * 89.71443 * 10 9 7 12 12 C 1.38426 * 114.91750 * 179.86167 * 11 10 9 13 13 C 1.33389 * 114.92119 * 0.43437 * 12 11 10 14 14 S 1.75880 * 125.20397 * 270.02639 * 10 9 7 15 15 C 1.46925 * 118.73968 * 306.38910 * 6 5 3 16 16 C 1.53188 * 108.77613 * 53.60879 * 15 6 5 17 17 C 1.53042 * 109.49150 * 184.99699 * 3 2 1 18 18 H 1.08999 * 109.46023 * 58.67873 * 17 3 2 19 19 N 1.46492 * 109.46658 * 298.70154 * 17 3 2 20 20 C 1.36935 * 120.00376 * 155.00230 * 19 17 3 21 21 H 1.08003 * 119.99724 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99887 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.09002 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47029 * 300.00177 * 1 2 3 30 30 H 1.08996 * 109.47063 * 60.00219 * 1 2 3 31 31 H 1.08999 * 109.47029 * 239.99823 * 2 1 3 32 32 H 1.09005 * 109.46944 * 119.99531 * 2 1 3 33 33 H 1.09007 * 109.58824 * 294.36961 * 5 3 2 34 34 H 1.08996 * 109.58964 * 54.65095 * 5 3 2 35 35 H 1.09009 * 109.47189 * 300.00112 * 9 7 6 36 36 H 1.08996 * 109.47364 * 59.99704 * 9 7 6 37 37 H 1.07997 * 122.54184 * 0.02562 * 11 10 9 38 38 H 1.08001 * 122.54090 * 180.20227 * 12 11 10 39 39 H 1.08002 * 125.20860 * 179.79647 * 13 12 11 40 40 H 1.08999 * 109.58665 * 173.39949 * 15 6 5 41 41 H 1.09007 * 109.58384 * 293.67864 * 15 6 5 42 42 H 1.09002 * 109.49733 * 185.41830 * 16 15 6 43 43 H 1.08993 * 109.50070 * 65.31666 * 16 15 6 44 44 H 0.97009 * 119.99477 * 335.00815 * 19 17 3 45 45 H 0.97006 * 119.99732 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6386 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5681 8 8 0.2898 4.4405 1.7333 9 6 2.1226 5.9217 1.6059 10 6 1.0639 6.9631 1.8619 11 6 0.6778 7.3871 3.0663 12 6 -0.3119 8.3548 3.0542 13 6 -0.7359 8.7100 1.8404 14 16 0.1429 7.7996 0.6188 15 6 3.6952 3.5888 1.1498 16 6 4.0737 2.8882 -0.1589 17 6 3.5653 1.4450 -0.1257 18 1 3.8546 0.9370 -1.0456 19 7 4.1508 0.7475 1.0218 20 6 5.3886 0.1718 0.9145 21 1 5.9334 0.2323 -0.0160 22 6 5.9431 -0.4895 2.0017 23 7 7.1331 -1.0424 1.8987 24 14 5.0011 -0.5935 3.6115 25 1 4.1582 -1.8161 3.6137 26 1 4.1357 0.6046 3.7569 27 1 5.9604 -0.6515 4.7436 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.5532 2.2162 1.3585 34 1 1.9943 1.5364 2.1548 35 1 2.8652 5.9543 2.4032 36 1 2.6066 6.1235 0.6503 37 1 1.1069 7.0064 3.9813 38 1 -0.7131 8.7867 3.9592 39 1 -1.5015 9.4447 1.6385 40 1 3.9669 4.6428 1.0919 41 1 4.2209 3.1212 1.9824 42 1 5.1578 2.8894 -0.2719 43 1 3.6193 3.4147 -0.9981 44 1 3.6615 0.6935 1.8578 45 1 7.5204 -1.5048 2.6584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037778896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:21 Heat of formation + Delta-G solvation = -10.686224 kcal Electronic energy + Delta-G solvation = -25676.881026 eV Core-core repulsion = 22206.368825 eV Total energy + Delta-G solvation = -3470.512201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47184 -39.51695 -38.41394 -35.95530 -35.43039 -33.55966 -33.18048 -31.45667 -30.19743 -28.25443 -26.31457 -25.21491 -24.95250 -24.04373 -22.15695 -21.07057 -20.19203 -19.88241 -19.54914 -18.29410 -17.96046 -16.91246 -16.79028 -16.41724 -16.19454 -15.95107 -15.57725 -15.06212 -14.90928 -14.74172 -14.47277 -14.26457 -14.03136 -13.76012 -13.70024 -13.48351 -13.33341 -13.24245 -12.98217 -12.87407 -12.67289 -12.46737 -12.44822 -12.15844 -12.03267 -11.86434 -11.65415 -11.61323 -11.53468 -11.15714 -10.99080 -10.81262 -9.64255 -9.56693 -9.34576 -9.22544 -7.97836 -5.28378 0.07201 0.74509 1.11315 1.36061 1.38231 1.44826 1.59046 1.78666 2.10746 2.49270 3.34505 3.53235 3.61278 3.65643 3.84766 3.95019 4.00611 4.17641 4.25900 4.26773 4.30493 4.38767 4.43092 4.47908 4.57614 4.65284 4.71165 4.74342 4.80918 4.87660 4.96244 5.02879 5.15415 5.19129 5.21316 5.22532 5.29071 5.36860 5.39453 5.47569 5.59659 5.64200 5.85096 6.26429 6.42498 7.13151 7.13282 7.90187 8.08257 9.24140 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003463 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.745092 B = 8082.755636 C = 8640.865880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.094 4.094 4 H 0.089 0.911 5 C 0.120 3.880 6 N -0.604 5.604 7 C 0.514 3.486 8 O -0.574 6.574 9 C -0.068 4.068 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.144 4.144 13 C -0.215 4.215 14 S 0.089 5.911 15 C 0.113 3.887 16 C -0.144 4.144 17 C 0.176 3.824 18 H 0.049 0.951 19 N -0.742 5.742 20 C -0.210 4.210 21 H 0.063 0.937 22 C -0.059 4.059 23 N -0.984 5.984 24 Si 0.939 3.061 25 H -0.284 1.284 26 H -0.257 1.257 27 H -0.300 1.300 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.186 0.814 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 18.935 -2.089 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.107 0.893 5 C -0.003 4.003 6 N -0.336 5.336 7 C 0.303 3.697 8 O -0.454 6.454 9 C -0.109 4.109 10 C -0.289 4.289 11 C -0.171 4.171 12 C -0.174 4.174 13 C -0.350 4.350 14 S 0.353 5.647 15 C -0.009 4.009 16 C -0.184 4.184 17 C 0.068 3.932 18 H 0.067 0.933 19 N -0.386 5.386 20 C -0.341 4.341 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.636 5.636 24 Si 0.768 3.232 25 H -0.211 1.211 26 H -0.182 1.182 27 H -0.227 1.227 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.203 0.797 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.196 0.804 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.464 18.786 -3.683 24.609 hybrid contribution 0.127 -0.760 2.722 2.829 sum -15.337 18.026 -0.962 23.687 Atomic orbital electron populations 1.21792 0.94688 1.02003 1.01953 1.21408 0.96189 0.95224 1.02046 1.21695 0.95443 0.96600 0.97647 0.89323 1.21548 0.99041 0.82323 0.97369 1.48189 1.08976 1.06207 1.70260 1.20953 0.86591 0.86636 0.75561 1.90674 1.16350 1.87035 1.51296 1.20271 0.96265 0.87251 1.07077 1.23996 1.04252 1.03912 0.96706 1.20356 0.99540 0.99325 0.97926 1.20399 0.98676 0.99272 0.99060 1.25919 1.06852 1.06784 0.95475 1.84194 1.34091 1.35589 1.10833 1.21790 0.78346 1.02410 0.98343 1.22375 1.01595 0.97250 0.97181 1.20427 0.90955 0.91630 0.90152 0.93288 1.42808 1.18202 1.65918 1.11672 1.18998 0.93006 1.24538 0.97558 0.91947 1.25279 0.97453 1.01347 1.00974 1.69856 1.18446 1.43543 1.31754 0.85662 0.78094 0.78469 0.80982 1.21095 1.18238 1.22732 0.92114 0.93055 0.91927 0.91737 0.93403 0.89415 0.93328 0.84973 0.85630 0.83850 0.82351 0.79688 0.87011 0.92450 0.91455 0.90164 0.80446 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.68 71.98 0.70 -2.75 16 2 C -0.11 -3.14 5.19 30.60 0.16 -2.98 16 3 C -0.09 -2.67 2.14 -10.72 -0.02 -2.69 16 4 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 5 C 0.12 3.57 5.03 86.36 0.43 4.00 16 6 N -0.60 -16.43 2.97 -818.92 -2.43 -18.87 16 7 C 0.51 13.87 7.69 87.65 0.67 14.55 16 8 O -0.57 -19.56 15.45 -3.04 -0.05 -19.61 16 9 C -0.07 -1.31 4.54 29.10 0.13 -1.17 16 10 C -0.17 -3.68 5.00 24.59 0.12 -3.56 16 11 C -0.14 -2.91 10.05 21.22 0.21 -2.70 16 12 C -0.14 -2.58 10.18 21.22 0.22 -2.37 16 13 C -0.21 -3.71 11.23 66.72 0.75 -2.96 16 14 S 0.09 1.79 23.33 -56.49 -1.32 0.47 16 15 C 0.11 2.89 6.08 86.36 0.53 3.42 16 16 C -0.14 -4.01 5.78 30.67 0.18 -3.83 16 17 C 0.18 5.89 2.53 45.02 0.11 6.00 16 18 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 19 N -0.74 -31.17 3.53 -322.81 -1.14 -32.31 16 20 C -0.21 -11.05 10.41 84.03 0.87 -10.17 16 21 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 22 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 23 N -0.98 -61.30 13.97 21.65 0.30 -61.00 16 24 Si 0.94 44.53 27.73 68.60 1.90 46.43 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.26 -11.10 6.52 99.48 0.65 -10.45 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.22 6.70 -2.39 -0.02 1.21 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.57 7.70 -2.38 -0.02 1.55 16 33 H 0.09 2.66 5.73 -2.38 -0.01 2.65 16 34 H 0.05 1.60 6.64 -2.39 -0.02 1.59 16 35 H 0.13 2.01 7.94 -2.38 -0.02 2.00 16 36 H 0.13 1.88 7.69 -2.39 -0.02 1.86 16 37 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.11 2.01 5.93 -2.39 -0.01 1.99 16 41 H 0.06 1.78 7.75 -2.38 -0.02 1.76 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.36 15.20 3.81 -92.70 -0.35 14.84 16 45 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -68.77 366.10 3.37 -65.40 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.58 Total: 29.58 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.53 Total: -10.09 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -3.27 Total: -112.18 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.32 Total: 0.47 kcal Total: -68.77 3.37 -65.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.715 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds