Wall clock time and date at job start Tue Mar 31 2020 13:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 H 1.09005 * 109.49551 * 54.93187 * 3 2 1 5 5 C 1.53192 * 109.49552 * 294.83570 * 3 2 1 6 6 N 1.46924 * 108.77673 * 185.41147 * 5 3 2 7 7 C 1.34778 * 120.63135 * 233.62979 * 6 5 3 8 8 O 1.21277 * 120.00256 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99703 * 179.97438 * 7 6 5 10 10 C 1.50705 * 109.47044 * 180.02562 * 9 7 6 11 11 C 1.33387 * 125.20002 * 90.00033 * 10 9 7 12 12 C 1.38430 * 114.91872 * 179.97438 * 11 10 9 13 13 C 1.33388 * 114.92324 * 359.97438 * 12 11 10 14 14 S 1.75885 * 125.20524 * 269.69760 * 10 9 7 15 15 C 1.46927 * 118.73818 * 53.61306 * 6 5 3 16 16 C 1.53175 * 108.76379 * 306.38799 * 15 6 5 17 17 C 1.53035 * 109.49966 * 175.00090 * 3 2 1 18 18 H 1.09001 * 109.45723 * 301.32106 * 17 3 2 19 19 N 1.46496 * 109.46332 * 61.29000 * 17 3 2 20 20 C 1.36934 * 120.00548 * 205.02698 * 19 17 3 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 H 1.08997 * 109.47452 * 60.00279 * 1 2 3 29 29 H 1.09004 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47614 * 300.00345 * 1 2 3 31 31 H 1.08998 * 109.47569 * 239.99667 * 2 1 3 32 32 H 1.09000 * 109.47170 * 119.99275 * 2 1 3 33 33 H 1.08999 * 109.58980 * 305.20515 * 5 3 2 34 34 H 1.09006 * 109.58765 * 65.48509 * 5 3 2 35 35 H 1.08996 * 109.47658 * 299.99942 * 9 7 6 36 36 H 1.08998 * 109.47208 * 60.00389 * 9 7 6 37 37 H 1.07997 * 122.54323 * 359.95916 * 11 10 9 38 38 H 1.07999 * 122.53740 * 180.02562 * 12 11 10 39 39 H 1.07995 * 125.20718 * 180.02562 * 13 12 11 40 40 H 1.08996 * 109.59058 * 66.17338 * 15 6 5 41 41 H 1.09000 * 109.58850 * 186.60928 * 15 6 5 42 42 H 1.08998 * 109.49961 * 294.68175 * 16 15 6 43 43 H 1.08995 * 109.47564 * 174.59305 * 16 15 6 44 44 H 0.96999 * 119.99694 * 25.03222 * 19 17 3 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9823 0.8410 5 6 1.6385 2.1267 -1.3105 6 7 2.2450 3.4643 -1.3508 7 6 1.4855 4.5565 -1.5675 8 8 0.2894 4.4406 -1.7310 9 6 2.1225 5.9217 -1.6053 10 6 1.0635 6.9632 -1.8604 11 6 0.3660 7.5977 -0.9170 12 6 -0.5550 8.5160 -1.3909 13 6 -0.6051 8.6276 -2.7192 14 16 0.5636 7.5334 -3.4474 15 6 3.6952 3.5888 -1.1500 16 6 4.0733 2.8883 0.1587 17 6 3.5651 1.4451 0.1257 18 1 3.8545 0.9372 1.0457 19 7 4.1506 0.7475 -1.0217 20 6 5.3882 0.1713 -0.9142 21 1 5.9325 0.2309 0.0168 22 6 5.9432 -0.4892 -2.0016 23 7 7.1326 -1.0434 -1.8980 24 14 5.0015 -0.5928 -3.6115 25 1 4.1591 -1.8157 -3.6145 26 1 4.1357 0.6050 -3.7565 27 1 5.9611 -0.6500 -4.7434 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.9964 1.5376 -2.1549 34 1 0.5530 2.2138 -1.3598 35 1 2.6070 6.1233 -0.6500 36 1 2.8644 5.9545 -2.4031 37 1 0.5088 7.4091 0.1368 38 1 -1.1848 9.0986 -0.7349 39 1 -1.2602 9.2911 -3.2640 40 1 4.2209 3.1189 -1.9812 41 1 3.9669 4.6428 -1.0919 42 1 3.6189 3.4150 0.9978 43 1 5.1574 2.8898 0.2716 44 1 3.6617 0.6938 -1.8577 45 1 7.5202 -1.5053 -2.6578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037778900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:30 Heat of formation + Delta-G solvation = -10.732808 kcal Electronic energy + Delta-G solvation = -25676.659736 eV Core-core repulsion = 22206.145515 eV Total energy + Delta-G solvation = -3470.514221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47060 -39.51328 -38.40968 -35.95491 -35.42968 -33.55908 -33.17839 -31.45540 -30.19577 -28.25091 -26.31197 -25.21330 -24.95119 -24.04490 -22.15284 -21.08384 -20.11869 -19.88328 -19.60269 -18.29750 -17.94109 -16.97521 -16.68494 -16.49015 -16.19829 -15.92604 -15.56018 -15.05131 -14.90659 -14.77844 -14.47330 -14.25751 -13.96460 -13.87192 -13.60775 -13.49684 -13.36631 -13.20777 -12.98778 -12.87709 -12.67118 -12.46696 -12.44490 -12.16107 -12.03357 -11.86524 -11.64422 -11.61059 -11.53188 -11.15476 -10.98986 -10.81252 -9.64097 -9.56363 -9.36648 -9.22481 -7.98127 -5.28497 0.07839 0.74204 1.12120 1.35676 1.37580 1.44145 1.59345 1.79502 2.11181 2.48825 3.34307 3.53467 3.61792 3.65826 3.85315 3.95689 4.00971 4.17657 4.24675 4.27018 4.31194 4.38916 4.43273 4.49380 4.58070 4.65319 4.71828 4.75771 4.81184 4.87892 4.96634 5.03277 5.15834 5.19472 5.22092 5.22659 5.29636 5.37125 5.39608 5.47924 5.61175 5.64610 5.85040 6.26285 6.42765 7.13024 7.13528 7.90262 8.08016 9.23858 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016345 B = 0.003507 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.668735 B = 7982.095258 C = 8607.398362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.093 4.093 4 H 0.090 0.910 5 C 0.120 3.880 6 N -0.604 5.604 7 C 0.514 3.486 8 O -0.574 6.574 9 C -0.067 4.067 10 C -0.170 4.170 11 C -0.136 4.136 12 C -0.142 4.142 13 C -0.215 4.215 14 S 0.073 5.927 15 C 0.113 3.887 16 C -0.143 4.143 17 C 0.176 3.824 18 H 0.050 0.950 19 N -0.743 5.743 20 C -0.209 4.209 21 H 0.063 0.937 22 C -0.059 4.059 23 N -0.984 5.984 24 Si 0.938 3.062 25 H -0.284 1.284 26 H -0.259 1.259 27 H -0.300 1.300 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.361 0.639 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 19.030 2.761 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.113 4.113 4 H 0.108 0.892 5 C -0.003 4.003 6 N -0.336 5.336 7 C 0.303 3.697 8 O -0.454 6.454 9 C -0.108 4.108 10 C -0.288 4.288 11 C -0.166 4.166 12 C -0.172 4.172 13 C -0.350 4.350 14 S 0.336 5.664 15 C -0.009 4.009 16 C -0.183 4.183 17 C 0.068 3.932 18 H 0.068 0.932 19 N -0.387 5.387 20 C -0.340 4.340 21 H 0.081 0.919 22 C -0.250 4.250 23 N -0.636 5.636 24 Si 0.767 3.233 25 H -0.211 1.211 26 H -0.184 1.184 27 H -0.227 1.227 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.168 0.832 38 H 0.179 0.821 39 H 0.202 0.798 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.071 18.588 1.274 23.964 hybrid contribution -0.303 -0.495 0.107 0.590 sum -15.374 18.093 1.381 23.783 Atomic orbital electron populations 1.21791 0.94686 1.01990 1.01961 1.21407 0.96190 0.95274 1.02023 1.21692 0.95434 0.96559 0.97619 0.89157 1.21551 0.99046 0.82319 0.97382 1.48191 1.08964 1.06198 1.70280 1.20953 0.86595 0.86629 0.75561 1.90672 1.16348 1.87033 1.51310 1.20272 0.96071 0.87343 1.07152 1.23983 1.04868 1.03900 0.96031 1.20371 0.97189 0.98030 1.01033 1.20435 1.00819 1.00740 0.95200 1.25900 1.05217 1.05594 0.98278 1.84338 1.35726 1.37011 1.09321 1.21794 0.78328 1.02430 0.98365 1.22369 1.01589 0.97204 0.97168 1.20438 0.90968 0.91670 0.90135 0.93221 1.42821 1.18238 1.65910 1.11688 1.19002 0.93020 1.24491 0.97525 0.91874 1.25267 0.97447 1.01391 1.00917 1.69851 1.18466 1.43553 1.31713 0.85676 0.78103 0.78431 0.81082 1.21075 1.18367 1.22738 0.93096 0.92151 0.91857 0.93496 0.91701 0.93510 0.89389 0.84137 0.86457 0.83192 0.82078 0.79808 0.92665 0.86935 0.89931 0.91489 0.80492 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.67 71.98 0.70 -2.73 16 2 C -0.11 -3.14 5.19 30.59 0.16 -2.98 16 3 C -0.09 -2.62 2.14 -10.72 -0.02 -2.65 16 4 H 0.09 2.27 8.14 -2.38 -0.02 2.26 16 5 C 0.12 3.56 5.03 86.36 0.43 4.00 16 6 N -0.60 -16.43 2.97 -818.94 -2.43 -18.86 16 7 C 0.51 13.86 7.69 87.66 0.67 14.53 16 8 O -0.57 -19.57 15.45 -3.02 -0.05 -19.61 16 9 C -0.07 -1.30 4.54 29.10 0.13 -1.17 16 10 C -0.17 -3.65 5.00 24.59 0.12 -3.53 16 11 C -0.14 -2.65 10.05 21.22 0.21 -2.44 16 12 C -0.14 -2.45 10.18 21.22 0.22 -2.24 16 13 C -0.21 -3.76 11.23 66.72 0.75 -3.01 16 14 S 0.07 1.54 23.33 -56.49 -1.32 0.22 16 15 C 0.11 2.89 6.08 86.36 0.53 3.41 16 16 C -0.14 -3.93 5.78 30.67 0.18 -3.76 16 17 C 0.18 5.83 2.53 45.02 0.11 5.95 16 18 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 19 N -0.74 -31.24 3.52 -322.84 -1.14 -32.38 16 20 C -0.21 -11.02 10.41 84.03 0.87 -10.14 16 21 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 22 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 23 N -0.98 -61.37 13.97 21.65 0.30 -61.06 16 24 Si 0.94 44.76 27.74 68.60 1.90 46.67 16 25 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 27 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 28 H 0.05 1.21 6.70 -2.39 -0.02 1.20 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.54 7.70 -2.39 -0.02 1.52 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.56 6.64 -2.39 -0.02 1.54 16 34 H 0.09 2.67 5.73 -2.38 -0.01 2.66 16 35 H 0.14 1.89 7.69 -2.39 -0.02 1.87 16 36 H 0.12 1.95 7.94 -2.39 -0.02 1.93 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.05 1.73 7.74 -2.39 -0.02 1.71 16 41 H 0.11 2.01 5.93 -2.39 -0.01 1.99 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.36 15.26 3.80 -92.71 -0.35 14.91 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.17 366.08 3.38 -65.79 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.58 Total: 28.85 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.53 Total: -9.62 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -3.27 Total: -112.30 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Total: -69.17 3.38 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037778900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.061 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds