Wall clock time and date at job start Tue Mar 31 2020 13:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47357 * 2 1 4 4 H 1.09002 * 109.52199 * 305.08416 * 3 2 1 5 5 C 1.53198 * 109.49442 * 65.16336 * 3 2 1 6 6 N 1.46926 * 108.77184 * 174.58809 * 5 3 2 7 7 C 1.34774 * 120.62544 * 126.37169 * 6 5 3 8 8 O 1.21638 * 120.00707 * 354.38647 * 7 6 5 9 9 C 1.47198 * 119.99692 * 174.38833 * 7 6 5 10 10 C 1.36011 * 123.45822 * 315.32391 * 9 7 6 11 11 S 1.70450 * 110.81636 * 179.97438 * 10 9 7 12 12 C 1.75510 * 92.44282 * 0.02562 * 11 10 9 13 13 C 1.32764 * 110.57492 * 359.73625 * 12 11 10 14 14 C 1.50706 * 123.45867 * 180.22922 * 13 12 11 15 15 C 1.46926 * 118.74020 * 306.38821 * 6 5 3 16 16 C 1.53169 * 108.76595 * 53.61364 * 15 6 5 17 17 C 1.53034 * 109.49770 * 185.00275 * 3 2 1 18 18 H 1.08998 * 109.46329 * 58.67915 * 17 3 2 19 19 N 1.46499 * 109.45920 * 298.70247 * 17 3 2 20 20 C 1.36943 * 119.99743 * 154.97454 * 19 17 3 21 21 H 1.07998 * 119.99899 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99644 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00199 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47198 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.46848 * 300.00338 * 24 22 20 27 27 H 1.48502 * 109.46877 * 59.99783 * 24 22 20 28 28 H 1.08992 * 109.47227 * 59.99723 * 1 2 3 29 29 H 1.09004 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47026 * 299.99520 * 1 2 3 31 31 H 1.09003 * 109.46773 * 240.00098 * 2 1 3 32 32 H 1.08992 * 109.47227 * 120.00277 * 2 1 3 33 33 H 1.09007 * 109.58611 * 294.37349 * 5 3 2 34 34 H 1.08994 * 109.58813 * 54.79802 * 5 3 2 35 35 H 1.07999 * 124.59010 * 359.97438 * 10 9 7 36 36 H 1.07999 * 124.71173 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.47081 * 270.23660 * 14 13 12 38 38 H 1.09001 * 109.46736 * 30.23576 * 14 13 12 39 39 H 1.09000 * 109.47284 * 150.23247 * 14 13 12 40 40 H 1.08993 * 109.58221 * 173.39759 * 15 6 5 41 41 H 1.08994 * 109.58857 * 293.68506 * 15 6 5 42 42 H 1.08995 * 109.47570 * 185.40586 * 16 15 6 43 43 H 1.09000 * 109.49969 * 65.31797 * 16 15 6 44 44 H 0.96999 * 120.00352 * 334.97685 * 19 17 3 45 45 H 0.97002 * 119.99885 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6386 2.1267 1.3106 6 7 2.2452 3.4643 1.3508 7 6 1.4857 4.5564 1.5674 8 8 0.2754 4.4529 1.6302 9 6 2.1209 5.8745 1.7281 10 6 3.2217 6.0876 2.4980 11 16 3.6844 7.7274 2.4527 12 6 2.3669 8.1471 1.3718 13 6 1.6425 7.0733 1.0802 14 6 0.4415 7.1032 0.1703 15 6 3.6954 3.5887 1.1499 16 6 4.0735 2.8882 -0.1587 17 6 3.5652 1.4450 -0.1258 18 1 3.8546 0.9371 -1.0458 19 7 4.1507 0.7474 1.0217 20 6 5.3883 0.1712 0.9141 21 1 5.9329 0.2314 -0.0166 22 6 5.9429 -0.4902 2.0013 23 7 5.2790 -0.5639 3.1354 24 14 7.6314 -1.2756 1.8547 25 1 7.9938 -1.9147 3.1452 26 1 7.6078 -2.3035 0.7832 27 1 8.6346 -0.2334 1.5189 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5533 2.2161 1.3586 34 1 1.9965 1.5376 2.1549 35 1 3.7333 5.3214 3.0616 36 1 2.1751 9.1399 0.9924 37 1 -0.4543 7.3048 0.7576 38 1 0.5707 7.8870 -0.5761 39 1 0.3397 6.1395 -0.3287 40 1 3.9670 4.6427 1.0920 41 1 4.2210 3.1211 1.9823 42 1 5.1575 2.8897 -0.2716 43 1 3.6190 3.4149 -0.9978 44 1 3.6618 0.6937 1.8578 45 1 5.6666 -1.0258 3.8952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037820382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:02 Heat of formation + Delta-G solvation = -0.268991 kcal Electronic energy + Delta-G solvation = -26127.021669 eV Core-core repulsion = 22656.961193 eV Total energy + Delta-G solvation = -3470.060476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28977 -38.25428 -36.89583 -34.46964 -33.74288 -31.75022 -31.19981 -29.41946 -28.60130 -27.63934 -25.51554 -23.80052 -23.74575 -23.16661 -20.82587 -20.52966 -18.77168 -18.13175 -17.50236 -17.31048 -16.62005 -15.71812 -14.97926 -14.80766 -14.57943 -14.00406 -13.93399 -13.82182 -13.52835 -13.30936 -13.28949 -13.15418 -12.82952 -12.56560 -12.40810 -12.27980 -12.09682 -11.88554 -11.65535 -11.39710 -11.10123 -11.02206 -10.95517 -10.79710 -10.70241 -10.29381 -10.26157 -10.19974 -9.78344 -9.61775 -9.54755 -8.97430 -8.84560 -8.41471 -8.17205 -6.98784 -5.80491 -3.08808 0.81121 1.49802 1.84109 2.08139 3.09768 3.40496 3.43631 3.46024 3.46545 4.56088 4.63324 4.79178 5.05613 5.15608 5.29404 5.29525 5.35498 5.41064 5.53949 5.56490 5.58794 5.63125 5.70788 5.71532 5.81313 5.83112 5.86832 5.93281 6.09394 6.15800 6.16564 6.20730 6.33488 6.36409 6.40340 6.42755 6.57446 6.65756 6.71677 6.78408 6.94961 7.02289 7.66804 7.72161 8.38068 8.39794 9.49714 10.06477 10.41781 11.41821 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.004281 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.073935 B = 6539.266156 C = 8093.415794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.576 3.424 8 O -0.545 6.545 9 C -0.142 4.142 10 C -0.207 4.207 11 S 0.171 5.829 12 C -0.245 4.245 13 C -0.057 4.057 14 C -0.090 4.090 15 C 0.108 3.892 16 C -0.149 4.149 17 C 0.178 3.822 18 H 0.051 0.949 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.292 1.292 26 H -0.287 1.287 27 H -0.287 1.287 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 15.151 -4.835 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.362 3.638 8 O -0.425 6.425 9 C -0.160 4.160 10 C -0.345 4.345 11 S 0.438 5.562 12 C -0.379 4.379 13 C -0.069 4.069 14 C -0.149 4.149 15 C -0.014 4.014 16 C -0.190 4.190 17 C 0.068 3.932 18 H 0.069 0.931 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.214 1.214 27 H -0.214 1.214 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.191 0.809 36 H 0.184 0.816 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.693 15.831 -4.143 17.326 hybrid contribution -0.039 -1.380 -0.313 1.415 sum -5.732 14.451 -4.456 16.173 Atomic orbital electron populations 1.21851 0.96806 1.01009 1.01370 1.21416 0.94279 0.95727 1.03360 1.21742 0.97362 0.96116 0.97014 0.91567 1.21719 0.98840 0.81328 0.98389 1.48021 1.08849 1.06313 1.69236 1.17640 0.86264 0.83137 0.76756 1.90751 1.13593 1.86040 1.52091 1.20165 0.97739 0.94903 1.03173 1.25723 1.00656 1.02753 1.05331 1.82983 1.28782 0.99695 1.44704 1.25230 1.02078 1.02792 1.07837 1.19806 0.98045 0.90312 0.98727 1.20454 0.94274 1.02857 0.97304 1.21917 0.79060 1.00561 0.99873 1.22510 1.01732 0.99215 0.95524 1.20227 0.89751 0.90626 0.92609 0.93142 1.42465 1.19069 1.63958 1.10566 1.19175 0.93631 1.27004 0.97057 0.91337 1.24687 0.98502 1.01452 0.96021 1.69638 1.38152 1.48061 1.02260 0.86326 0.84399 0.79209 0.76572 1.21815 1.21369 1.21390 0.93376 0.93177 0.92785 0.92033 0.90500 0.89486 0.90666 0.80879 0.81632 0.90632 0.91635 0.91104 0.90707 0.89866 0.90782 0.93353 0.78117 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.68 2.14 -90.50 -0.19 -1.87 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.04 5.04 -3.71 -0.02 2.02 16 6 N -0.59 -9.86 2.97 -174.13 -0.52 -10.38 16 7 C 0.58 9.76 6.91 -12.62 -0.09 9.67 16 8 O -0.55 -10.53 15.65 5.24 0.08 -10.45 16 9 C -0.14 -2.05 5.02 -104.63 -0.53 -2.57 16 10 C -0.21 -2.62 8.45 29.93 0.25 -2.37 16 11 S 0.17 1.71 23.02 -107.50 -2.48 -0.76 16 12 C -0.24 -2.51 10.91 28.86 0.31 -2.20 16 13 C -0.06 -0.72 6.00 -104.06 -0.62 -1.34 16 14 C -0.09 -1.01 9.55 36.01 0.34 -0.67 16 15 C 0.11 1.75 5.11 -3.72 -0.02 1.73 16 16 C -0.15 -2.48 5.78 -26.62 -0.15 -2.64 16 17 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -16.26 3.73 -53.38 -0.20 -16.46 16 20 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 21 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 24 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.42 7.70 -51.93 -0.40 1.03 16 33 H 0.09 1.49 5.72 -51.93 -0.30 1.20 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 35 H 0.17 2.15 7.38 -52.49 -0.39 1.76 16 36 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.07 0.91 7.42 -51.93 -0.39 0.53 16 40 H 0.07 1.08 5.00 -51.93 -0.26 0.82 16 41 H 0.08 1.55 7.74 -51.93 -0.40 1.14 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.38 9.33 5.94 -40.82 -0.24 9.09 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -29.32 364.67 -9.66 -38.98 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.84 Total: 10.45 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.91 Total: -7.38 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.01 Total: -52.89 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.48 Total: -0.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.32 -9.66 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037820382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.711 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds