Wall clock time and date at job start Tue Mar 31 2020 13:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.52999 * 109.46818 * 2 1 4 4 H 1.08996 * 109.50096 * 304.93704 * 3 2 1 5 5 C 1.53199 * 109.49562 * 64.99993 * 3 2 1 6 6 N 1.46929 * 108.77013 * 174.58331 * 5 3 2 7 7 C 1.34776 * 120.62549 * 126.41720 * 6 5 3 8 8 O 1.21635 * 120.00231 * 354.40918 * 7 6 5 9 9 C 1.47190 * 119.99904 * 174.40714 * 7 6 5 10 10 C 1.36011 * 123.46200 * 315.11676 * 9 7 6 11 11 S 1.70450 * 110.81684 * 179.89202 * 10 9 7 12 12 C 1.75504 * 92.44458 * 0.31716 * 11 10 9 13 13 C 1.32770 * 110.57691 * 359.82108 * 12 11 10 14 14 C 1.50703 * 123.45763 * 180.02562 * 13 12 11 15 15 C 1.46927 * 118.74082 * 306.38960 * 6 5 3 16 16 C 1.53192 * 108.77371 * 53.61381 * 15 6 5 17 17 C 1.53042 * 109.49484 * 184.83676 * 3 2 1 18 18 H 1.08996 * 109.46208 * 298.70228 * 17 3 2 19 19 N 1.46500 * 109.45826 * 58.66662 * 17 3 2 20 20 C 1.36935 * 119.99712 * 204.99663 * 19 17 3 21 21 H 1.08002 * 119.99959 * 0.02562 * 20 19 17 22 22 C 1.38809 * 119.99878 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00135 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00138 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47050 * 89.99943 * 24 22 20 26 26 H 1.48504 * 109.47080 * 210.00001 * 24 22 20 27 27 H 1.48499 * 109.46978 * 329.99957 * 24 22 20 28 28 H 1.09000 * 109.46622 * 60.00187 * 1 2 3 29 29 H 1.08993 * 109.46650 * 299.99486 * 1 2 3 30 30 H 1.09001 * 109.46650 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46862 * 120.00303 * 2 1 3 32 32 H 1.09001 * 109.46969 * 239.99951 * 2 1 3 33 33 H 1.08994 * 109.58902 * 294.37133 * 5 3 2 34 34 H 1.08999 * 109.58218 * 54.65809 * 5 3 2 35 35 H 1.07998 * 124.59119 * 0.02562 * 10 9 7 36 36 H 1.07997 * 124.70884 * 179.85285 * 12 11 10 37 37 H 1.08998 * 109.46738 * 269.97298 * 14 13 12 38 38 H 1.08996 * 109.47054 * 29.97697 * 14 13 12 39 39 H 1.09000 * 109.46814 * 149.97297 * 14 13 12 40 40 H 1.08998 * 109.58368 * 173.39983 * 15 6 5 41 41 H 1.08998 * 109.58569 * 293.68199 * 15 6 5 42 42 H 1.08998 * 109.49897 * 65.31267 * 16 15 6 43 43 H 1.08997 * 109.49605 * 185.41098 * 16 15 6 44 44 H 0.96999 * 119.99739 * 25.00080 * 19 17 3 45 45 H 0.97001 * 120.00263 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9817 -0.8423 5 6 1.6350 2.1280 1.3089 6 7 2.2415 3.4656 1.3494 7 6 1.4816 4.5579 1.5638 8 8 0.2711 4.4542 1.6246 9 6 2.1163 5.8761 1.7245 10 6 3.2133 6.0908 2.4993 11 16 3.6780 7.7300 2.4506 12 6 2.3613 8.1489 1.3684 13 6 1.6346 7.0757 1.0804 14 6 0.4310 7.1061 0.1739 15 6 3.6922 3.5899 1.1523 16 6 4.0741 2.8881 -0.1548 17 6 3.5656 1.4449 -0.1216 18 1 3.9990 0.9268 0.7338 19 7 3.9578 0.7608 -1.3563 20 6 5.1962 0.1851 -1.4562 21 1 5.8836 0.2350 -0.6247 22 6 5.5681 -0.4626 -2.6263 23 7 6.7582 -1.0165 -2.7222 24 14 4.3794 -0.5483 -4.0648 25 1 4.5829 0.6296 -4.9458 26 1 4.6258 -1.7926 -4.8371 27 1 2.9847 -0.5501 -3.5549 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.5497 2.2173 1.3539 34 1 1.9886 1.5384 2.1547 35 1 3.7224 5.3258 3.0667 36 1 2.1693 9.1416 0.9889 37 1 -0.4634 7.3050 0.7643 38 1 0.5570 7.8916 -0.5710 39 1 0.3291 6.1433 -0.3269 40 1 3.9640 4.6438 1.0941 41 1 4.2156 3.1230 1.9867 42 1 3.6219 3.4139 -0.9956 43 1 5.1585 2.8893 -0.2649 44 1 3.3403 0.7158 -2.1030 45 1 7.0179 -1.4695 -3.5397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037820383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:09 Heat of formation + Delta-G solvation = 1.796338 kcal Electronic energy + Delta-G solvation = -25799.805698 eV Core-core repulsion = 22329.834781 eV Total energy + Delta-G solvation = -3469.970917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46871 -38.33854 -37.06798 -34.90175 -33.90904 -31.84946 -31.38586 -29.91325 -28.99212 -27.77835 -25.65345 -23.98448 -23.86833 -22.29454 -20.85898 -20.67378 -19.72899 -18.43415 -17.77622 -17.52903 -16.82881 -15.94300 -15.12739 -15.10643 -14.56270 -14.22690 -14.00019 -13.77091 -13.65394 -13.46133 -13.44582 -13.27030 -12.89217 -12.72014 -12.53451 -12.44159 -12.26494 -11.99388 -11.83086 -11.81382 -11.42666 -11.17346 -11.04050 -11.01027 -10.79283 -10.42786 -10.33601 -10.22128 -9.84585 -9.75900 -9.59816 -9.07634 -8.91535 -8.61483 -8.44284 -7.29397 -5.80294 -3.15616 0.65239 1.35622 1.69648 1.93743 2.85036 3.21147 3.35040 3.38557 3.43660 4.47249 4.56305 4.58215 4.92325 4.96473 5.04203 5.12704 5.16952 5.22842 5.30504 5.37264 5.46744 5.50997 5.52954 5.55963 5.59239 5.60506 5.73711 5.78785 5.91943 5.99971 6.03167 6.04118 6.09690 6.21285 6.25772 6.28118 6.33470 6.46371 6.55524 6.70045 6.79551 6.93555 7.43737 7.95357 8.16740 8.38894 9.17224 9.90117 10.10169 11.38036 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003698 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.398636 B = 7568.935202 C = 8443.964478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.578 3.422 8 O -0.540 6.540 9 C -0.142 4.142 10 C -0.212 4.212 11 S 0.176 5.824 12 C -0.242 4.242 13 C -0.057 4.057 14 C -0.091 4.091 15 C 0.100 3.900 16 C -0.150 4.150 17 C 0.189 3.811 18 H 0.056 0.944 19 N -0.745 5.745 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.934 5.934 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.276 1.276 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 16.534 10.843 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.331 5.331 7 C 0.365 3.635 8 O -0.418 6.418 9 C -0.160 4.160 10 C -0.349 4.349 11 S 0.443 5.557 12 C -0.376 4.376 13 C -0.068 4.068 14 C -0.150 4.150 15 C -0.023 4.023 16 C -0.191 4.191 17 C 0.079 3.921 18 H 0.074 0.926 19 N -0.387 5.387 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.906 17.196 11.596 22.572 hybrid contribution -1.620 -1.007 -1.799 2.622 sum -10.526 16.189 9.797 21.653 Atomic orbital electron populations 1.21853 0.96617 1.01160 1.01455 1.21468 0.94562 0.95671 1.03434 1.21826 0.97600 0.96274 0.97091 0.91242 1.21746 0.99565 0.81195 0.97692 1.48056 1.08669 1.06462 1.69935 1.17657 0.86263 0.83120 0.76473 1.90769 1.13554 1.85961 1.51522 1.20139 0.97846 0.94800 1.03221 1.25654 1.00843 1.02916 1.05528 1.83009 1.28780 0.99531 1.44394 1.25259 1.01749 1.02942 1.07687 1.19816 0.98074 0.90233 0.98720 1.20471 0.94158 1.03035 0.97385 1.22075 0.79228 1.01869 0.99112 1.22631 1.02573 0.98664 0.95265 1.20163 0.90659 0.90652 0.90657 0.92551 1.42772 1.16501 1.66266 1.13124 1.19046 0.90414 1.27308 1.00432 0.89218 1.24641 0.96389 1.00238 0.97649 1.69692 1.19269 1.41568 1.27610 0.86605 0.81160 0.77329 0.83753 1.21179 1.21782 1.20263 0.93075 0.92935 0.93051 0.91944 0.90422 0.88955 0.91368 0.81058 0.81497 0.90573 0.91478 0.91059 0.89803 0.91386 0.92279 0.90053 0.80610 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.72 5.31 -26.73 -0.14 -1.86 16 3 C -0.11 -1.67 1.93 -90.50 -0.17 -1.84 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.68 5.33 -3.70 -0.02 1.66 16 6 N -0.60 -8.30 2.97 -174.12 -0.52 -8.81 16 7 C 0.58 8.53 6.92 -12.63 -0.09 8.45 16 8 O -0.54 -9.37 15.63 5.25 0.08 -9.29 16 9 C -0.14 -1.78 5.01 -104.63 -0.52 -2.30 16 10 C -0.21 -2.15 8.45 29.93 0.25 -1.90 16 11 S 0.18 1.46 23.02 -107.50 -2.48 -1.02 16 12 C -0.24 -2.21 10.91 28.86 0.31 -1.90 16 13 C -0.06 -0.65 6.00 -104.06 -0.62 -1.27 16 14 C -0.09 -0.97 9.55 36.01 0.34 -0.63 16 15 C 0.10 1.29 5.38 -3.71 -0.02 1.27 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.19 3.37 2.19 -67.89 -0.15 3.22 16 18 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 19 N -0.74 -16.64 4.14 -53.39 -0.22 -16.86 16 20 C -0.24 -6.51 10.41 -15.06 -0.16 -6.66 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 24 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.38 7.22 -51.93 -0.37 1.00 16 33 H 0.09 1.33 5.71 -51.93 -0.30 1.04 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.17 1.49 7.39 -52.49 -0.39 1.10 16 36 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.07 0.88 7.41 -51.93 -0.38 0.50 16 40 H 0.08 0.98 5.01 -51.93 -0.26 0.72 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.36 8.13 5.37 -40.82 -0.22 7.91 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -31.62 365.14 -9.37 -40.99 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.93 Total: 8.24 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.87 Total: -7.87 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.04 Total: -53.59 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.48 Total: -1.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.62 -9.37 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037820383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.787 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds