Wall clock time and date at job start Tue Mar 31 2020 13:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 H 1.09004 * 109.49919 * 304.93690 * 3 2 1 5 5 C 1.53190 * 109.49743 * 65.00203 * 3 2 1 6 6 N 1.46928 * 108.77664 * 174.61512 * 5 3 2 7 7 C 1.34778 * 120.62574 * 126.36728 * 6 5 3 8 8 O 1.21636 * 120.00276 * 4.16591 * 7 6 5 9 9 C 1.47196 * 119.99824 * 184.15685 * 7 6 5 10 10 C 1.44422 * 123.46074 * 308.41878 * 9 7 6 11 11 C 1.32770 * 113.08421 * 180.02562 * 10 9 7 12 12 S 1.75510 * 110.57340 * 0.26209 * 11 10 9 13 13 C 1.36009 * 123.45747 * 128.44057 * 9 7 6 14 14 C 1.50700 * 124.59160 * 0.02562 * 13 9 7 15 15 C 1.46920 * 118.74180 * 306.64838 * 6 5 3 16 16 C 1.52763 * 109.00984 * 53.30579 * 15 6 5 17 17 C 1.53034 * 109.52705 * 184.85867 * 3 2 1 18 18 H 1.09000 * 109.46136 * 58.66098 * 17 3 2 19 19 N 1.46502 * 109.46011 * 298.68948 * 17 3 2 20 20 C 1.36939 * 120.00228 * 154.99794 * 19 17 3 21 21 H 1.08001 * 119.99977 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99935 * 180.02562 * 20 19 17 23 23 N 1.31611 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99834 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47240 * 89.99592 * 24 22 20 26 26 H 1.48500 * 109.46854 * 209.99821 * 24 22 20 27 27 H 1.48501 * 109.46806 * 329.99612 * 24 22 20 28 28 H 1.09006 * 109.46455 * 299.99793 * 1 2 3 29 29 H 1.08996 * 109.47120 * 59.99219 * 1 2 3 30 30 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46837 * 240.00850 * 2 1 3 32 32 H 1.08991 * 109.47521 * 120.00171 * 2 1 3 33 33 H 1.09002 * 109.58553 * 54.83543 * 5 3 2 34 34 H 1.08999 * 109.70341 * 294.47901 * 5 3 2 35 35 H 1.08000 * 123.45907 * 359.97438 * 10 9 7 36 36 H 1.07992 * 124.71639 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47041 * 90.00549 * 14 13 9 38 38 H 1.09007 * 109.47033 * 209.99633 * 14 13 9 39 39 H 1.08996 * 109.47390 * 329.99771 * 14 13 9 40 40 H 1.09001 * 109.58607 * 173.14334 * 15 6 5 41 41 H 1.09000 * 109.58598 * 293.56888 * 15 6 5 42 42 H 1.08999 * 109.56624 * 185.55183 * 16 15 6 43 43 H 1.09005 * 109.38211 * 65.51611 * 16 15 6 44 44 H 0.96996 * 119.99662 * 334.99632 * 19 17 3 45 45 H 0.97005 * 120.00321 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2411 3.4659 1.3491 7 6 1.4805 4.5579 1.5626 8 8 0.2937 4.4357 1.7995 9 6 2.0862 5.8984 1.5094 10 6 3.2688 6.2679 2.2515 11 6 3.6361 7.5281 2.0517 12 16 2.5337 8.3232 0.9414 13 6 1.5894 6.9164 0.7566 14 6 0.3652 6.8162 -0.1166 15 6 3.6907 3.5913 1.1459 16 6 4.0734 2.8889 -0.1556 17 6 3.5655 1.4457 -0.1222 18 1 3.8573 0.9369 -1.0409 19 7 4.1486 0.7496 1.0275 20 6 5.3870 0.1743 0.9236 21 1 5.9340 0.2341 -0.0057 22 6 5.9393 -0.4856 2.0128 23 7 5.2729 -0.5581 3.1455 24 14 7.6288 -1.2697 1.8713 25 1 8.6672 -0.2814 2.2590 26 1 7.7051 -2.4473 2.7729 27 1 7.8572 -1.7037 0.4697 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9914 1.5400 2.1546 34 1 0.5498 2.2167 1.3567 35 1 3.7993 5.5892 2.9029 36 1 4.4920 7.9995 2.5117 37 1 -0.5173 7.0893 0.4622 38 1 0.4673 7.4936 -0.9646 39 1 0.2600 5.7937 -0.4790 40 1 3.9612 4.6454 1.0839 41 1 4.2180 3.1250 1.9781 42 1 5.1578 2.8906 -0.2661 43 1 3.6212 3.4144 -0.9968 44 1 3.6576 0.6963 1.8622 45 1 5.6590 -1.0189 3.9068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037843327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:17 Heat of formation + Delta-G solvation = -0.334097 kcal Electronic energy + Delta-G solvation = -26162.748565 eV Core-core repulsion = 22692.685266 eV Total energy + Delta-G solvation = -3470.063299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27414 -38.17675 -36.77417 -34.36909 -33.73927 -32.10853 -31.67819 -29.46293 -28.77989 -27.21662 -25.05699 -23.98848 -23.49040 -23.10880 -21.13578 -20.62291 -18.99223 -18.05073 -17.34434 -17.27037 -16.33403 -15.96132 -15.06051 -14.72916 -14.61840 -14.08271 -13.98150 -13.90730 -13.56468 -13.47910 -13.26052 -13.02461 -12.89195 -12.62250 -12.40182 -12.33124 -12.11355 -11.72984 -11.65508 -11.39728 -11.13797 -11.06458 -10.94225 -10.78981 -10.67316 -10.29587 -10.24846 -10.17475 -9.78499 -9.61560 -9.54440 -8.93979 -8.83893 -8.45189 -8.16919 -6.97942 -5.79733 -3.08048 0.82774 1.43761 1.81608 2.14098 3.09191 3.40470 3.43712 3.46706 3.47937 4.56684 4.60483 4.74394 5.04071 5.13402 5.21054 5.30570 5.36931 5.44250 5.47950 5.55881 5.57165 5.61664 5.70163 5.77144 5.84492 5.87244 5.88214 5.93897 6.01555 6.10656 6.16828 6.21694 6.23365 6.36247 6.40011 6.43809 6.57575 6.66043 6.72384 6.78331 6.95320 7.02933 7.67930 7.73730 8.38705 8.40679 9.50474 10.07287 10.42562 11.42638 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.004127 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.787518 B = 6782.458571 C = 8148.972951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.578 3.422 8 O -0.547 6.547 9 C -0.152 4.152 10 C -0.101 4.101 11 C -0.233 4.233 12 S 0.160 5.840 13 C -0.162 4.162 14 C -0.082 4.082 15 C 0.109 3.891 16 C -0.149 4.149 17 C 0.178 3.822 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 15.236 -6.243 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.364 3.636 8 O -0.427 6.427 9 C -0.169 4.169 10 C -0.130 4.130 11 C -0.368 4.368 12 S 0.425 5.575 13 C -0.281 4.281 14 C -0.140 4.140 15 C -0.013 4.013 16 C -0.190 4.190 17 C 0.068 3.932 18 H 0.068 0.932 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.209 1.209 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.328 16.520 -6.738 19.288 hybrid contribution 1.211 -1.958 0.939 2.487 sum -6.117 14.562 -5.799 16.825 Atomic orbital electron populations 1.21854 0.96825 1.01040 1.01336 1.21415 0.94264 0.95719 1.03386 1.21741 0.97416 0.96121 0.96956 0.91660 1.21710 0.98746 0.81487 0.98377 1.48033 1.08816 1.06244 1.69133 1.17628 0.85755 0.83391 0.76845 1.90757 1.15455 1.86639 1.49831 1.20164 0.98415 0.95335 1.03003 1.21295 0.95218 0.96077 1.00413 1.25369 1.05897 0.98637 1.06852 1.82891 1.19462 1.12102 1.43048 1.24275 1.02845 0.97487 1.03511 1.20359 0.92914 1.03579 0.97193 1.21836 0.79004 1.00617 0.99889 1.22444 1.01743 0.99185 0.95653 1.20222 0.89726 0.90662 0.92589 0.93164 1.42471 1.18976 1.64044 1.10567 1.19215 0.93539 1.26972 0.97088 0.91291 1.24686 0.98476 1.01485 0.96033 1.69645 1.38006 1.48140 1.02249 0.86253 0.84481 0.78765 0.77047 1.21861 1.21902 1.20862 0.92772 0.93411 0.93152 0.92027 0.90457 0.90657 0.89585 0.83038 0.81433 0.90008 0.91276 0.90358 0.90452 0.89783 0.90780 0.93461 0.78095 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 2.04 5.02 -3.71 -0.02 2.02 16 6 N -0.59 -9.89 2.98 -174.38 -0.52 -10.41 16 7 C 0.58 9.83 6.71 -12.62 -0.08 9.75 16 8 O -0.55 -10.67 15.97 5.25 0.08 -10.59 16 9 C -0.15 -2.20 4.96 -104.63 -0.52 -2.72 16 10 C -0.10 -1.26 7.97 -39.02 -0.31 -1.58 16 11 C -0.23 -2.41 11.12 28.86 0.32 -2.09 16 12 S 0.16 1.57 22.97 -107.50 -2.47 -0.90 16 13 C -0.16 -2.02 6.34 -35.11 -0.22 -2.25 16 14 C -0.08 -0.91 9.71 36.01 0.35 -0.56 16 15 C 0.11 1.77 5.45 -3.93 -0.02 1.75 16 16 C -0.15 -2.49 5.76 -26.83 -0.15 -2.64 16 17 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -16.31 3.73 -53.39 -0.20 -16.50 16 20 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 24 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.05 0.74 6.70 -51.93 -0.35 0.40 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 33 H 0.08 1.43 6.64 -51.93 -0.34 1.09 16 34 H 0.09 1.48 5.75 -51.93 -0.30 1.18 16 35 H 0.15 1.86 7.56 -52.49 -0.40 1.46 16 36 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.98 7.50 -51.93 -0.39 0.59 16 40 H 0.08 1.12 4.62 -51.93 -0.24 0.88 16 41 H 0.08 1.58 7.74 -51.93 -0.40 1.18 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.38 9.38 5.94 -40.82 -0.24 9.14 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -29.60 365.12 -9.78 -39.39 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.83 Total: 10.35 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.05 Total: -7.31 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.01 Total: -53.04 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.60 -9.78 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037843327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.054 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds