Wall clock time and date at job start Tue Mar 31 2020 13:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 H 1.09004 * 109.49919 * 304.93690 * 3 2 1 5 5 C 1.53190 * 109.49743 * 65.00203 * 3 2 1 6 6 N 1.46928 * 108.77664 * 174.61512 * 5 3 2 7 7 C 1.34778 * 120.62574 * 126.36728 * 6 5 3 8 8 O 1.21636 * 120.00276 * 4.16591 * 7 6 5 9 9 C 1.47196 * 119.99824 * 184.15685 * 7 6 5 10 10 C 1.44422 * 123.46074 * 308.41878 * 9 7 6 11 11 C 1.32770 * 113.08421 * 180.02562 * 10 9 7 12 12 S 1.75510 * 110.57340 * 0.26209 * 11 10 9 13 13 C 1.36009 * 123.45747 * 128.44057 * 9 7 6 14 14 C 1.50700 * 124.59160 * 0.02562 * 13 9 7 15 15 C 1.46920 * 118.74180 * 306.64838 * 6 5 3 16 16 C 1.52763 * 109.00984 * 53.30579 * 15 6 5 17 17 C 1.53034 * 109.52705 * 184.85867 * 3 2 1 18 18 H 1.09000 * 109.46136 * 58.66098 * 17 3 2 19 19 N 1.46502 * 109.46011 * 298.68948 * 17 3 2 20 20 C 1.36939 * 120.00228 * 154.99794 * 19 17 3 21 21 H 1.08001 * 119.99977 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99935 * 180.02562 * 20 19 17 23 23 N 1.31611 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99834 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47240 * 89.99592 * 24 22 20 26 26 H 1.48500 * 109.46854 * 209.99821 * 24 22 20 27 27 H 1.48501 * 109.46806 * 329.99612 * 24 22 20 28 28 H 1.09006 * 109.46455 * 299.99793 * 1 2 3 29 29 H 1.08996 * 109.47120 * 59.99219 * 1 2 3 30 30 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46837 * 240.00850 * 2 1 3 32 32 H 1.08991 * 109.47521 * 120.00171 * 2 1 3 33 33 H 1.09002 * 109.58553 * 54.83543 * 5 3 2 34 34 H 1.08999 * 109.70341 * 294.47901 * 5 3 2 35 35 H 1.08000 * 123.45907 * 359.97438 * 10 9 7 36 36 H 1.07992 * 124.71639 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47041 * 90.00549 * 14 13 9 38 38 H 1.09007 * 109.47033 * 209.99633 * 14 13 9 39 39 H 1.08996 * 109.47390 * 329.99771 * 14 13 9 40 40 H 1.09001 * 109.58607 * 173.14334 * 15 6 5 41 41 H 1.09000 * 109.58598 * 293.56888 * 15 6 5 42 42 H 1.08999 * 109.56624 * 185.55183 * 16 15 6 43 43 H 1.09005 * 109.38211 * 65.51611 * 16 15 6 44 44 H 0.96996 * 119.99662 * 334.99632 * 19 17 3 45 45 H 0.97005 * 120.00321 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2411 3.4659 1.3491 7 6 1.4805 4.5579 1.5626 8 8 0.2937 4.4357 1.7995 9 6 2.0862 5.8984 1.5094 10 6 3.2688 6.2679 2.2515 11 6 3.6361 7.5281 2.0517 12 16 2.5337 8.3232 0.9414 13 6 1.5894 6.9164 0.7566 14 6 0.3652 6.8162 -0.1166 15 6 3.6907 3.5913 1.1459 16 6 4.0734 2.8889 -0.1556 17 6 3.5655 1.4457 -0.1222 18 1 3.8573 0.9369 -1.0409 19 7 4.1486 0.7496 1.0275 20 6 5.3870 0.1743 0.9236 21 1 5.9340 0.2341 -0.0057 22 6 5.9393 -0.4856 2.0128 23 7 5.2729 -0.5581 3.1455 24 14 7.6288 -1.2697 1.8713 25 1 8.6672 -0.2814 2.2590 26 1 7.7051 -2.4473 2.7729 27 1 7.8572 -1.7037 0.4697 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9914 1.5400 2.1546 34 1 0.5498 2.2167 1.3567 35 1 3.7993 5.5892 2.9029 36 1 4.4920 7.9995 2.5117 37 1 -0.5173 7.0893 0.4622 38 1 0.4673 7.4936 -0.9646 39 1 0.2600 5.7937 -0.4790 40 1 3.9612 4.6454 1.0839 41 1 4.2180 3.1250 1.9781 42 1 5.1578 2.8906 -0.2661 43 1 3.6212 3.4144 -0.9968 44 1 3.6576 0.6963 1.8622 45 1 5.6590 -1.0189 3.9068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037843327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:16 Heat of formation + Delta-G solvation = -16.213988 kcal Electronic energy + Delta-G solvation = -26163.437169 eV Core-core repulsion = 22692.685266 eV Total energy + Delta-G solvation = -3470.751903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58596 -39.50695 -37.90558 -35.87346 -35.32138 -33.41988 -32.97688 -31.04138 -30.22371 -28.32877 -26.38974 -25.48962 -25.13727 -24.18667 -22.37171 -21.84406 -20.31405 -19.42050 -19.24119 -18.19839 -17.56725 -17.21473 -16.63294 -16.16740 -16.00072 -15.65899 -15.43818 -14.94879 -14.80425 -14.70801 -14.61263 -14.29198 -14.08361 -13.97400 -13.69235 -13.46930 -13.21275 -13.02045 -12.85378 -12.80635 -12.64868 -12.59115 -12.36456 -12.18736 -12.08851 -11.90488 -11.83317 -11.58216 -11.45401 -11.14253 -10.96291 -10.78326 -9.77279 -9.61164 -9.27517 -8.90868 -7.87474 -5.13762 -0.10528 0.59202 0.92379 1.12116 1.50064 1.50701 1.58453 1.85738 2.15079 2.60609 3.46156 3.56952 3.72381 3.82504 3.86908 4.03378 4.08226 4.17589 4.28635 4.35415 4.36715 4.44410 4.46537 4.58949 4.59429 4.62728 4.67998 4.83409 4.89301 4.92720 5.00993 5.02534 5.05101 5.13141 5.16485 5.22223 5.24867 5.29279 5.30054 5.40330 5.51621 5.60948 5.66128 6.33892 6.41030 7.08198 7.41684 8.17489 8.41583 9.35814 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.004127 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.787518 B = 6782.458571 C = 8148.972951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.084 0.916 5 C 0.125 3.875 6 N -0.593 5.593 7 C 0.577 3.423 8 O -0.580 6.580 9 C -0.184 4.184 10 C -0.124 4.124 11 C -0.225 4.225 12 S 0.232 5.768 13 C -0.174 4.174 14 C -0.083 4.083 15 C 0.119 3.881 16 C -0.141 4.141 17 C 0.173 3.827 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.226 4.226 21 H 0.075 0.925 22 C -0.071 4.071 23 N -0.969 5.969 24 Si 0.963 3.037 25 H -0.290 1.290 26 H -0.303 1.303 27 H -0.272 1.272 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.196 0.804 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.524 17.737 -8.239 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.102 0.898 5 C 0.002 3.998 6 N -0.323 5.323 7 C 0.365 3.635 8 O -0.461 6.461 9 C -0.201 4.201 10 C -0.153 4.153 11 C -0.360 4.360 12 S 0.498 5.502 13 C -0.294 4.294 14 C -0.141 4.141 15 C -0.003 4.003 16 C -0.182 4.182 17 C 0.064 3.936 18 H 0.067 0.933 19 N -0.365 5.365 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.793 3.207 25 H -0.218 1.218 26 H -0.230 1.230 27 H -0.197 1.197 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.214 0.786 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.028 19.049 -8.790 22.125 hybrid contribution 1.063 -2.597 1.499 3.181 sum -5.966 16.452 -7.291 18.959 Atomic orbital electron populations 1.21785 0.94723 1.01972 1.01841 1.21338 0.96092 0.95047 1.01837 1.21644 0.95866 0.96510 0.96986 0.89765 1.21549 0.98595 0.81777 0.97854 1.48063 1.08957 1.06123 1.69140 1.18084 0.85369 0.84366 0.75669 1.90722 1.16889 1.87272 1.51239 1.20074 1.00119 0.94397 1.05536 1.21226 0.95364 0.97274 1.01454 1.25772 1.06332 0.97860 1.06012 1.82675 1.17227 1.09229 1.41069 1.24644 1.03356 0.98506 1.02881 1.20405 0.92501 1.03231 0.97963 1.21710 0.78468 1.01688 0.98455 1.22322 1.01411 0.97819 0.96628 1.20439 0.91036 0.91323 0.90802 0.93323 1.42575 1.18208 1.64312 1.11358 1.19567 0.94222 1.25207 0.96808 0.90680 1.25360 1.01720 1.03194 0.96066 1.69805 1.39510 1.49864 1.02863 0.85293 0.80878 0.77403 0.77102 1.21775 1.23020 1.19657 0.93334 0.91748 0.92079 0.91765 0.93705 0.93393 0.89621 0.83739 0.78649 0.89981 0.88452 0.92205 0.88134 0.92922 0.91371 0.91056 0.79359 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.67 71.98 0.70 -3.16 16 2 C -0.10 -3.37 5.19 30.59 0.16 -3.21 16 3 C -0.09 -2.93 2.14 -10.72 -0.02 -2.95 16 4 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 5 C 0.12 4.42 5.02 86.36 0.43 4.85 16 6 N -0.59 -20.14 2.98 -823.87 -2.45 -22.59 16 7 C 0.58 19.82 6.71 86.60 0.58 20.40 16 8 O -0.58 -23.04 15.97 -4.14 -0.07 -23.11 16 9 C -0.18 -5.15 4.96 -19.87 -0.10 -5.25 16 10 C -0.12 -2.97 7.97 22.67 0.18 -2.79 16 11 C -0.22 -3.97 11.12 66.64 0.74 -3.23 16 12 S 0.23 3.71 22.97 -56.49 -1.30 2.41 16 13 C -0.17 -3.99 6.34 25.17 0.16 -3.83 16 14 C -0.08 -1.68 9.71 71.24 0.69 -0.98 16 15 C 0.12 3.89 5.45 86.22 0.47 4.36 16 16 C -0.14 -4.57 5.76 30.53 0.18 -4.39 16 17 C 0.17 6.36 2.53 45.02 0.11 6.47 16 18 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 19 N -0.72 -33.66 3.73 -322.82 -1.20 -34.86 16 20 C -0.23 -11.77 9.93 84.03 0.83 -10.93 16 21 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 23 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 24 Si 0.96 45.08 29.55 68.60 2.03 47.11 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H 0.05 1.33 6.70 -2.38 -0.02 1.31 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.73 7.70 -2.39 -0.02 1.71 16 33 H 0.05 1.95 6.64 -2.39 -0.02 1.94 16 34 H 0.09 3.03 5.75 -2.39 -0.01 3.02 16 35 H 0.15 3.55 7.56 -2.91 -0.02 3.53 16 36 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.06 1.44 7.50 -2.39 -0.02 1.42 16 40 H 0.10 2.84 4.62 -2.39 -0.01 2.83 16 41 H 0.05 2.06 7.74 -2.39 -0.02 2.05 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.37 19.11 5.94 -92.71 -0.55 18.56 16 45 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -65.43 365.12 3.32 -62.11 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.44 Total: 34.56 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.58 Total: -8.12 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.37 Total: -114.97 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.07 Total: -23.11 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.30 Total: 2.41 kcal Total: -65.43 3.32 -62.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037843327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.899 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds