Wall clock time and date at job start Tue Mar 31 2020 13:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.08997 * 109.52442 * 304.91339 * 3 2 1 5 5 C 1.53184 * 109.49993 * 65.00217 * 3 2 1 6 6 N 1.46927 * 108.89671 * 174.65591 * 5 3 2 7 7 C 1.34775 * 120.63305 * 126.29082 * 6 5 3 8 8 O 1.21641 * 119.99718 * 354.38209 * 7 6 5 9 9 C 1.47187 * 120.00001 * 174.37576 * 7 6 5 10 10 C 1.44428 * 123.46048 * 316.01325 * 9 7 6 11 11 C 1.32776 * 113.08215 * 179.80953 * 10 9 7 12 12 S 1.75505 * 110.57453 * 0.44467 * 11 10 9 13 13 C 1.36011 * 123.45917 * 136.31232 * 9 7 6 14 14 C 1.50692 * 124.59420 * 359.94016 * 13 9 7 15 15 C 1.46923 * 118.73594 * 306.31900 * 6 5 3 16 16 C 1.53191 * 108.77828 * 53.60718 * 15 6 5 17 17 C 1.53045 * 109.31052 * 305.36551 * 16 15 6 18 18 H 1.08997 * 109.45894 * 301.35720 * 17 16 15 19 19 N 1.46500 * 109.45852 * 181.38340 * 17 16 15 20 20 C 1.36935 * 119.99798 * 85.00067 * 19 17 16 21 21 H 1.08001 * 120.00770 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00137 * 179.97438 * 20 19 17 23 23 N 1.31616 * 119.99977 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47086 * 120.00297 * 24 22 20 27 27 H 1.48502 * 109.46982 * 239.99888 * 24 22 20 28 28 H 1.09003 * 109.47125 * 300.00280 * 1 2 3 29 29 H 1.09006 * 109.47031 * 60.00002 * 1 2 3 30 30 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47125 * 239.99720 * 2 1 3 32 32 H 1.09006 * 109.47031 * 119.99998 * 2 1 3 33 33 H 1.09000 * 109.59119 * 54.79464 * 5 3 2 34 34 H 1.09007 * 109.58723 * 294.51370 * 5 3 2 35 35 H 1.07997 * 123.46041 * 0.02562 * 10 9 7 36 36 H 1.07996 * 124.70934 * 180.17923 * 11 10 9 37 37 H 1.08995 * 109.47801 * 90.00158 * 14 13 9 38 38 H 1.09000 * 109.47416 * 210.00316 * 14 13 9 39 39 H 1.09010 * 109.47231 * 330.00186 * 14 13 9 40 40 H 1.09008 * 109.58712 * 173.38957 * 15 6 5 41 41 H 1.08998 * 109.58554 * 293.81976 * 15 6 5 42 42 H 1.09002 * 109.49952 * 65.31411 * 16 15 6 43 43 H 1.08999 * 109.50056 * 185.38334 * 16 15 6 44 44 H 0.96998 * 120.00328 * 264.99553 * 19 17 16 45 45 H 0.96996 * 120.00683 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6351 2.1280 1.3087 6 7 2.2389 3.4668 1.3512 7 6 1.4765 4.5575 1.5645 8 8 0.2660 4.4516 1.6221 9 6 2.1085 5.8767 1.7279 10 6 3.2819 6.1026 2.5391 11 6 3.6800 7.3692 2.5373 12 16 2.6164 8.3487 1.5425 13 6 1.6440 7.0093 1.1351 14 6 0.4342 7.0715 0.2388 15 6 3.6895 3.5940 1.1562 16 6 4.0746 2.8939 -0.1509 17 6 3.5688 1.4498 -0.1196 18 1 4.0018 0.9319 0.7362 19 7 3.9641 0.7674 -1.3542 20 6 5.2031 0.1929 -1.4524 21 1 5.8893 0.2431 -0.6199 22 6 5.5775 -0.4542 -2.6221 23 7 4.7413 -0.5159 -3.6366 24 14 7.2681 -1.2373 -2.7562 25 1 8.0114 -1.0308 -1.4875 26 1 7.1206 -2.6928 -3.0116 27 1 8.0160 -0.6116 -3.8762 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9907 1.5398 2.1546 34 1 0.5495 2.2151 1.3550 35 1 3.7859 5.3208 3.0878 36 1 4.5366 7.7454 3.0769 37 1 -0.4534 7.2698 0.8396 38 1 0.5640 7.8698 -0.4919 39 1 0.3167 6.1199 -0.2797 40 1 3.9595 4.6485 1.0991 41 1 4.2127 3.1252 1.9896 42 1 3.6226 3.4196 -0.9920 43 1 5.1591 2.8977 -0.2598 44 1 3.3480 0.7225 -2.1022 45 1 5.0029 -0.9677 -4.4541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037843330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:21 Heat of formation + Delta-G solvation = -2.941873 kcal Electronic energy + Delta-G solvation = -25732.210007 eV Core-core repulsion = 22262.033626 eV Total energy + Delta-G solvation = -3470.176381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36518 -38.12471 -36.87062 -34.69855 -33.75768 -32.16441 -31.69881 -29.50033 -29.04168 -27.21393 -25.11536 -24.08615 -23.29645 -22.79991 -21.04199 -20.68264 -19.60130 -18.54286 -17.39870 -17.09941 -16.41936 -16.09078 -15.25806 -14.86718 -14.64042 -14.03582 -13.99333 -13.77618 -13.59695 -13.53342 -13.28800 -13.11019 -12.96927 -12.78032 -12.51139 -12.30572 -12.07195 -11.80870 -11.71461 -11.57095 -11.28403 -11.16733 -10.94436 -10.84288 -10.68882 -10.34682 -10.19028 -10.13559 -9.79950 -9.69373 -9.58408 -8.96858 -8.90129 -8.59288 -8.38508 -6.96777 -5.78574 -3.07110 0.71981 1.33918 1.72518 1.97165 3.00516 3.28160 3.41065 3.46842 3.49075 4.51275 4.56477 4.62164 4.93607 5.07663 5.11154 5.24750 5.29374 5.37337 5.39843 5.44195 5.48845 5.58059 5.61849 5.66095 5.71123 5.75694 5.81463 5.90150 5.95810 6.03449 6.11096 6.14311 6.16998 6.34177 6.37152 6.41039 6.47203 6.59532 6.70107 6.83798 6.96461 7.06666 7.53692 7.68164 8.25428 8.39595 9.51208 10.08881 10.43831 11.43967 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.003541 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.424339 B = 7905.455467 C = 9059.998607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.580 3.420 8 O -0.543 6.543 9 C -0.161 4.161 10 C -0.102 4.102 11 C -0.235 4.235 12 S 0.167 5.833 13 C -0.153 4.153 14 C -0.084 4.084 15 C 0.103 3.897 16 C -0.150 4.150 17 C 0.184 3.816 18 H 0.047 0.953 19 N -0.720 5.720 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 15.443 12.442 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.330 5.330 7 C 0.367 3.633 8 O -0.422 6.422 9 C -0.178 4.178 10 C -0.131 4.131 11 C -0.370 4.370 12 S 0.433 5.567 13 C -0.273 4.273 14 C -0.143 4.143 15 C -0.020 4.020 16 C -0.192 4.192 17 C 0.073 3.927 18 H 0.065 0.935 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.903 16.813 12.131 21.557 hybrid contribution 1.079 -2.004 -0.047 2.277 sum -4.824 14.809 12.084 19.713 Atomic orbital electron populations 1.21843 0.96797 1.01013 1.01319 1.21441 0.94375 0.95685 1.03442 1.21824 0.97612 0.96215 0.96718 0.91232 1.21767 0.99495 0.81202 0.97872 1.48032 1.08586 1.06489 1.69874 1.17625 0.86163 0.83140 0.76382 1.90764 1.13633 1.85963 1.51826 1.20141 0.98963 0.94170 1.04515 1.21247 0.95190 0.96912 0.99750 1.25381 1.06177 0.97342 1.08091 1.82985 1.19676 1.09899 1.44154 1.24377 1.02640 0.96828 1.03477 1.20397 0.92995 1.03663 0.97207 1.22048 0.79278 1.01611 0.99052 1.22674 1.02104 0.99177 0.95197 1.20251 0.90725 0.90515 0.91188 0.93454 1.42415 1.16462 1.64527 1.12650 1.19260 0.91773 1.27254 0.98565 0.91202 1.24718 0.98104 1.01565 0.96428 1.69664 1.35213 1.48448 1.04657 0.86168 0.84089 0.78901 0.77331 1.20605 1.21930 1.21955 0.93212 0.92996 0.93178 0.89815 0.92461 0.91633 0.89103 0.83248 0.81427 0.89895 0.91227 0.90004 0.89849 0.91623 0.92267 0.90597 0.78212 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.81 5.32 -26.73 -0.14 -1.95 16 3 C -0.10 -1.71 1.94 -90.34 -0.18 -1.89 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.76 5.32 -3.71 -0.02 1.74 16 6 N -0.60 -8.72 2.97 -174.12 -0.52 -9.24 16 7 C 0.58 8.93 6.91 -12.63 -0.09 8.85 16 8 O -0.54 -9.75 15.42 5.24 0.08 -9.66 16 9 C -0.16 -2.10 4.97 -104.63 -0.52 -2.62 16 10 C -0.10 -1.07 8.01 -39.02 -0.31 -1.38 16 11 C -0.24 -2.08 11.12 28.86 0.32 -1.76 16 12 S 0.17 1.51 22.97 -107.50 -2.47 -0.96 16 13 C -0.15 -1.81 6.33 -35.11 -0.22 -2.03 16 14 C -0.08 -0.92 9.56 36.00 0.34 -0.58 16 15 C 0.10 1.39 5.36 -3.71 -0.02 1.37 16 16 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 17 C 0.18 3.45 2.20 -67.72 -0.15 3.30 16 18 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 19 N -0.72 -17.13 4.35 -53.22 -0.23 -17.36 16 20 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 24 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H 0.05 0.64 6.69 -51.93 -0.35 0.30 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.62 7.25 -51.93 -0.38 1.24 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.40 5.71 -51.92 -0.30 1.10 16 35 H 0.15 1.37 7.40 -52.49 -0.39 0.98 16 36 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.05 7.29 -51.92 -0.38 0.67 16 40 H 0.08 1.03 4.95 -51.92 -0.26 0.77 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.38 9.90 7.53 -40.82 -0.31 9.59 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -30.69 367.96 -9.88 -40.56 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.97 Total: 9.32 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.02 Total: -8.30 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.02 Total: -53.39 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.69 -9.88 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037843330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.623 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds