Wall clock time and date at job start Tue Mar 31 2020 13:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47179 * 2 1 4 4 H 1.09002 * 109.49789 * 55.05910 * 3 2 1 5 5 C 1.53199 * 109.49804 * 294.99899 * 3 2 1 6 6 N 1.46922 * 108.77647 * 185.41102 * 5 3 2 7 7 C 1.34778 * 120.63233 * 233.63130 * 6 5 3 8 8 O 1.21708 * 119.99947 * 356.40863 * 7 6 5 9 9 C 1.46576 * 120.00072 * 176.40692 * 7 6 5 10 10 C 1.36653 * 125.45677 * 224.84552 * 9 7 6 11 11 C 1.37472 * 113.29813 * 179.79939 * 10 9 7 12 12 C 1.50697 * 122.45144 * 180.20056 * 11 10 9 13 13 C 1.33820 * 115.09680 * 0.49814 * 11 10 9 14 14 S 1.70609 * 110.95751 * 359.72296 * 13 11 10 15 15 C 1.46928 * 118.73879 * 53.61039 * 6 5 3 16 16 C 1.53186 * 108.77404 * 306.39212 * 15 6 5 17 17 C 1.53034 * 109.50220 * 175.16290 * 3 2 1 18 18 H 1.08996 * 109.46004 * 301.33794 * 17 3 2 19 19 N 1.46501 * 109.45964 * 61.29470 * 17 3 2 20 20 C 1.36943 * 119.99758 * 205.00273 * 19 17 3 21 21 H 1.07997 * 120.00523 * 0.02562 * 20 19 17 22 22 C 1.38820 * 119.99709 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99823 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46941 * 60.00089 * 24 22 20 26 26 H 1.48500 * 109.47098 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46664 * 300.00307 * 24 22 20 28 28 H 1.08998 * 109.46751 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47057 * 60.00436 * 1 2 3 30 30 H 1.08999 * 109.47163 * 299.99813 * 1 2 3 31 31 H 1.08995 * 109.47129 * 120.00328 * 2 1 3 32 32 H 1.08999 * 109.47163 * 240.00187 * 2 1 3 33 33 H 1.08996 * 109.58635 * 305.20525 * 5 3 2 34 34 H 1.09006 * 109.58341 * 65.48343 * 5 3 2 35 35 H 1.07997 * 123.35184 * 0.02562 * 10 9 7 36 36 H 1.09004 * 109.47073 * 270.28783 * 12 11 10 37 37 H 1.09000 * 109.47353 * 30.29315 * 12 11 10 38 38 H 1.09008 * 109.46956 * 150.29640 * 12 11 10 39 39 H 1.08002 * 124.51895 * 179.70934 * 13 11 10 40 40 H 1.08995 * 109.58192 * 66.17719 * 15 6 5 41 41 H 1.09002 * 109.58512 * 186.46059 * 15 6 5 42 42 H 1.08999 * 109.50003 * 174.58844 * 16 15 6 43 43 H 1.09005 * 109.49501 * 294.64812 * 16 15 6 44 44 H 0.96995 * 120.00212 * 25.00536 * 19 17 3 45 45 H 0.97000 * 120.00197 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3494 7 6 1.4815 4.5580 -1.5629 8 8 0.2918 4.4368 -1.7893 9 6 2.0876 5.8919 -1.5224 10 6 1.5621 6.9825 -0.8885 11 6 2.3420 8.1084 -1.0068 12 6 1.9599 9.4260 -0.3833 13 6 3.4623 7.9503 -1.7215 14 16 3.6036 6.3472 -2.2880 15 6 3.6922 3.5899 -1.1523 16 6 4.0740 2.8880 0.1547 17 6 3.5655 1.4450 0.1216 18 1 3.8574 0.9360 1.0402 19 7 4.1480 0.7485 -1.0281 20 6 5.3861 0.1727 -0.9245 21 1 5.9331 0.2317 0.0048 22 6 5.9378 -0.4876 -2.0139 23 7 5.2710 -0.5599 -3.1463 24 14 7.6271 -1.2725 -1.8729 25 1 7.6070 -2.3013 -0.8021 26 1 7.9864 -1.9094 -3.1653 27 1 8.6308 -0.2301 -1.5391 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.9907 1.5397 -2.1547 34 1 0.5495 2.2151 -1.3550 35 1 0.6290 6.9611 -0.3453 36 1 1.3591 10.0008 -1.0882 37 1 1.3825 9.2451 0.5233 38 1 2.8618 9.9853 -0.1342 39 1 4.1810 8.7331 -1.9141 40 1 4.2155 3.1208 -1.9854 41 1 3.9644 4.6439 -1.0966 42 1 5.1584 2.8892 0.2650 43 1 3.6223 3.4142 0.9957 44 1 3.6567 0.6953 -1.8627 45 1 5.6566 -1.0210 -3.9076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037847489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:05 Heat of formation + Delta-G solvation = -13.822375 kcal Electronic energy + Delta-G solvation = -25818.442063 eV Core-core repulsion = 22347.793868 eV Total energy + Delta-G solvation = -3470.648195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48625 -39.60328 -38.70242 -35.95320 -35.37443 -33.42700 -32.12304 -31.05039 -29.99348 -28.65988 -27.01215 -25.58966 -25.15525 -24.46475 -22.19730 -21.20436 -20.08891 -19.91538 -19.23572 -18.85737 -17.51634 -17.09518 -16.67505 -16.22630 -16.02939 -15.71088 -15.47893 -14.97210 -14.80981 -14.75845 -14.44818 -14.36980 -14.06295 -14.01197 -13.72304 -13.33007 -13.07749 -13.02263 -12.80956 -12.77916 -12.70566 -12.64865 -12.40344 -12.21320 -12.13990 -11.86356 -11.71550 -11.58886 -11.45471 -11.17806 -11.11058 -10.80638 -9.92019 -9.64086 -9.24889 -8.90475 -7.86571 -5.13095 -0.40018 0.37892 0.96462 1.41618 1.51341 1.52324 1.58172 1.78828 2.05551 2.61416 3.40631 3.47020 3.78581 3.84608 3.98883 4.05629 4.08339 4.20020 4.24760 4.32417 4.39944 4.42564 4.45255 4.56554 4.65963 4.70303 4.79959 4.84146 4.87342 4.90668 4.99443 5.02271 5.08139 5.16011 5.20671 5.23332 5.25859 5.39325 5.41822 5.49983 5.51189 5.60383 5.63854 6.29116 6.34564 6.94388 7.42401 8.17786 8.41945 9.36409 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.004135 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.417687 B = 6770.197254 C = 8175.209976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.125 3.875 6 N -0.593 5.593 7 C 0.585 3.415 8 O -0.575 6.575 9 C -0.289 4.289 10 C -0.061 4.061 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.239 4.239 14 S 0.220 5.780 15 C 0.110 3.890 16 C -0.140 4.140 17 C 0.173 3.827 18 H 0.052 0.948 19 N -0.724 5.724 20 C -0.228 4.228 21 H 0.076 0.924 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.963 3.037 25 H -0.282 1.282 26 H -0.303 1.303 27 H -0.279 1.279 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.196 0.804 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 17.740 7.503 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.104 0.896 5 C 0.003 3.997 6 N -0.323 5.323 7 C 0.374 3.626 8 O -0.457 6.457 9 C -0.409 4.409 10 C -0.095 4.095 11 C -0.135 4.135 12 C -0.149 4.149 13 C -0.376 4.376 14 S 0.490 5.510 15 C -0.013 4.013 16 C -0.181 4.181 17 C 0.064 3.936 18 H 0.070 0.930 19 N -0.365 5.365 20 C -0.360 4.360 21 H 0.094 0.906 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.793 3.207 25 H -0.209 1.209 26 H -0.230 1.230 27 H -0.205 1.205 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.213 0.787 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.813 16.827 6.561 18.691 hybrid contribution -0.116 -0.191 0.067 0.233 sum -4.929 16.637 6.627 18.574 Atomic orbital electron populations 1.21792 0.94749 1.01990 1.01860 1.21334 0.96064 0.94939 1.01924 1.21668 0.95931 0.96602 0.96938 0.89621 1.21601 0.98715 0.81287 0.98134 1.48053 1.08937 1.06286 1.69055 1.17404 0.85484 0.83600 0.76153 1.90762 1.16438 1.86895 1.51573 1.24403 1.04026 0.98052 1.14378 1.20758 1.00296 0.90092 0.98361 1.18986 0.94791 0.97771 1.01933 1.20569 1.02789 0.91127 1.00444 1.25647 1.03785 1.02804 1.05344 1.83534 1.15907 1.01869 1.49700 1.22007 0.78418 1.01646 0.99270 1.22390 1.01670 0.97861 0.96144 1.20440 0.90997 0.91215 0.90946 0.93041 1.42576 1.18277 1.64289 1.11365 1.19538 0.94280 1.25350 0.96840 0.90603 1.25371 1.01735 1.03141 0.96067 1.69797 1.39587 1.49735 1.02832 0.85366 0.81010 0.78429 0.75854 1.20887 1.22970 1.20513 0.92067 0.93300 0.91764 0.91685 0.93623 0.93022 0.89397 0.83154 0.90392 0.90789 0.89954 0.78698 0.92327 0.88592 0.91059 0.90804 0.79346 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.67 71.98 0.70 -3.15 16 2 C -0.10 -3.31 5.19 30.59 0.16 -3.15 16 3 C -0.09 -2.95 2.14 -10.72 -0.02 -2.97 16 4 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 5 C 0.12 4.39 5.02 86.37 0.43 4.82 16 6 N -0.59 -20.25 2.97 -823.72 -2.45 -22.69 16 7 C 0.59 20.33 7.54 86.42 0.65 20.98 16 8 O -0.57 -23.21 16.52 -4.37 -0.07 -23.28 16 9 C -0.29 -8.18 5.48 24.08 0.13 -8.05 16 10 C -0.06 -1.45 10.02 21.72 0.22 -1.24 16 11 C -0.12 -2.26 5.78 -21.05 -0.12 -2.39 16 12 C -0.09 -1.07 10.13 71.23 0.72 -0.34 16 13 C -0.24 -4.21 10.67 66.82 0.71 -3.50 16 14 S 0.22 5.10 19.90 -56.49 -1.12 3.98 16 15 C 0.11 3.60 5.63 86.36 0.49 4.09 16 16 C -0.14 -4.50 5.78 30.67 0.18 -4.33 16 17 C 0.17 6.30 2.53 45.02 0.11 6.41 16 18 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 19 N -0.72 -33.44 3.72 -322.82 -1.20 -34.64 16 20 C -0.23 -11.80 9.93 84.03 0.83 -10.96 16 21 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 23 N -0.97 -57.42 13.06 21.65 0.28 -57.13 16 24 Si 0.96 44.84 29.55 68.60 2.03 46.87 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.33 6.69 -2.39 -0.02 1.31 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.74 7.69 -2.39 -0.02 1.72 16 33 H 0.05 2.08 6.64 -2.39 -0.02 2.06 16 34 H 0.09 3.08 5.74 -2.38 -0.01 3.07 16 35 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 38 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 39 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 41 H 0.10 2.73 3.99 -16.24 -0.06 2.66 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.37 18.96 5.94 -92.71 -0.55 18.41 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -64.90 366.06 3.51 -61.39 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.39 Total: 32.71 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.66 Total: -7.20 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.37 Total: -114.46 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.12 Total: 3.98 kcal Total: -64.90 3.51 -61.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.570 kcal (2) G-P(sol) polarization free energy of solvation -64.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds