Wall clock time and date at job start Tue Mar 31 2020 13:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46740 * 2 1 4 4 H 1.08997 * 109.49705 * 304.93222 * 3 2 1 5 5 C 1.53189 * 109.49921 * 64.99979 * 3 2 1 6 6 N 1.46926 * 108.77336 * 174.59015 * 5 3 2 7 7 C 1.34779 * 120.63196 * 126.41367 * 6 5 3 8 8 O 1.21704 * 120.00090 * 353.63348 * 7 6 5 9 9 C 1.46581 * 119.99739 * 173.63589 * 7 6 5 10 10 C 1.36657 * 125.45701 * 148.85250 * 9 7 6 11 11 C 1.37473 * 113.29623 * 179.83777 * 10 9 7 12 12 C 1.50691 * 122.44996 * 180.18138 * 11 10 9 13 13 C 1.33816 * 115.10031 * 0.45185 * 11 10 9 14 14 S 1.70620 * 110.95736 * 359.75090 * 13 11 10 15 15 C 1.46927 * 118.73643 * 306.38452 * 6 5 3 16 16 C 1.53194 * 108.77456 * 53.61244 * 15 6 5 17 17 C 1.53039 * 109.31266 * 305.36504 * 16 15 6 18 18 H 1.08998 * 109.45871 * 181.38323 * 17 16 15 19 19 N 1.46497 * 109.45782 * 301.34107 * 17 16 15 20 20 C 1.36938 * 120.00554 * 275.00184 * 19 17 16 21 21 H 1.07997 * 119.99696 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00110 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99974 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00191 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46822 * 90.00569 * 24 22 20 26 26 H 1.48495 * 109.47239 * 210.00338 * 24 22 20 27 27 H 1.48496 * 109.47380 * 330.00575 * 24 22 20 28 28 H 1.09005 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47439 * 300.00142 * 1 2 3 30 30 H 1.08997 * 109.47183 * 60.00769 * 1 2 3 31 31 H 1.08995 * 109.47439 * 239.99858 * 2 1 3 32 32 H 1.09006 * 109.47270 * 119.99072 * 2 1 3 33 33 H 1.08993 * 109.59178 * 54.79770 * 5 3 2 34 34 H 1.09006 * 109.70227 * 294.43857 * 5 3 2 35 35 H 1.07997 * 123.34948 * 0.02562 * 10 9 7 36 36 H 1.09001 * 109.47585 * 270.27114 * 12 11 10 37 37 H 1.09008 * 109.47189 * 30.26956 * 12 11 10 38 38 H 1.08999 * 109.47402 * 150.26716 * 12 11 10 39 39 H 1.07999 * 124.52275 * 179.77286 * 13 11 10 40 40 H 1.09003 * 109.58735 * 293.82151 * 15 6 5 41 41 H 1.08999 * 109.70355 * 173.46953 * 15 6 5 42 42 H 1.08998 * 109.49455 * 65.31515 * 16 15 6 43 43 H 1.08996 * 109.49681 * 185.40946 * 16 15 6 44 44 H 0.97005 * 119.99932 * 95.00411 * 19 17 16 45 45 H 0.96997 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9816 -0.8424 5 6 1.6349 2.1281 1.3087 6 7 2.2413 3.4658 1.3492 7 6 1.4813 4.5580 1.5635 8 8 0.2694 4.4565 1.6103 9 6 2.1144 5.8682 1.7403 10 6 1.5695 7.0675 1.3767 11 6 2.3793 8.1413 1.6614 12 6 1.9793 9.5605 1.3508 13 6 3.5512 7.8336 2.2294 14 16 3.7000 6.1479 2.4471 15 6 3.6919 3.5900 1.1521 16 6 4.0739 2.8881 -0.1549 17 6 3.5654 1.4450 -0.1217 18 1 3.8573 0.9360 -1.0402 19 7 4.1479 0.7487 1.0281 20 6 5.3855 0.1717 0.9243 21 1 5.9319 0.2297 -0.0054 22 6 5.9371 -0.4885 2.0136 23 7 7.1268 -1.0426 1.9139 24 14 4.9916 -0.5893 3.6215 25 1 4.1477 -1.8113 3.6237 26 1 5.9484 -0.6465 4.7557 27 1 4.1269 0.6095 3.7633 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.9906 1.5399 2.1546 34 1 0.5496 2.2173 1.3563 35 1 0.5980 7.1625 0.9147 36 1 2.3122 9.8203 0.3459 37 1 0.8947 9.6535 1.4096 38 1 2.4413 10.2345 2.0721 39 1 4.3025 8.5559 2.5126 40 1 4.2154 3.1211 1.9853 41 1 3.9661 4.6434 1.0948 42 1 3.6217 3.4139 -0.9958 43 1 5.1583 2.8893 -0.2650 44 1 3.6569 0.6963 1.8631 45 1 7.5124 -1.5036 2.6752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037847490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:10 Heat of formation + Delta-G solvation = 6.632266 kcal Electronic energy + Delta-G solvation = -25932.828342 eV Core-core repulsion = 22463.067127 eV Total energy + Delta-G solvation = -3469.761215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26919 -38.58130 -37.58467 -34.63205 -33.89386 -31.81145 -31.22905 -29.90107 -28.94779 -27.89987 -25.87022 -24.15132 -23.54945 -23.07939 -20.91585 -20.14989 -19.17649 -18.65352 -17.99569 -17.58389 -16.24993 -16.01845 -15.39592 -14.93101 -14.61302 -14.45858 -14.11799 -13.92692 -13.68914 -13.43091 -13.34002 -13.22078 -13.12928 -12.68176 -12.49170 -12.39799 -12.19618 -12.11856 -11.82825 -11.62881 -11.31362 -11.23716 -11.00397 -10.91937 -10.72724 -10.40627 -10.38238 -10.24186 -9.88263 -9.83980 -9.58563 -9.01734 -8.95588 -8.41805 -8.33893 -7.31479 -5.81810 -3.17249 0.47379 1.35969 1.82763 2.27703 2.99159 3.22121 3.31343 3.34647 3.41549 4.49595 4.53607 4.80044 4.92368 4.99901 5.08798 5.14146 5.18010 5.29629 5.35961 5.37813 5.38703 5.50455 5.54598 5.59242 5.63011 5.67099 5.72587 5.77959 5.85572 5.99948 6.02228 6.15412 6.18295 6.24067 6.25841 6.29316 6.42148 6.48574 6.53153 6.63941 6.73626 6.84680 7.49005 7.94498 8.17067 8.37264 9.15273 9.87931 10.07698 11.36578 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.004447 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.842747 B = 6295.355262 C = 7467.460503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.073 0.927 5 C 0.119 3.881 6 N -0.599 5.599 7 C 0.588 3.412 8 O -0.540 6.540 9 C -0.260 4.260 10 C -0.062 4.062 11 C -0.118 4.118 12 C -0.093 4.093 13 C -0.258 4.258 14 S 0.234 5.766 15 C 0.099 3.901 16 C -0.146 4.146 17 C 0.184 3.816 18 H 0.062 0.938 19 N -0.744 5.744 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.933 5.933 24 Si 0.876 3.124 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.165 0.835 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 16.589 -2.052 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.092 0.908 5 C -0.003 4.003 6 N -0.330 5.330 7 C 0.375 3.625 8 O -0.419 6.419 9 C -0.380 4.380 10 C -0.095 4.095 11 C -0.131 4.131 12 C -0.152 4.152 13 C -0.395 4.395 14 S 0.504 5.496 15 C -0.024 4.024 16 C -0.187 4.187 17 C 0.075 3.925 18 H 0.080 0.920 19 N -0.387 5.387 20 C -0.371 4.371 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.707 3.293 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.183 0.817 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.071 15.483 -1.464 18.004 hybrid contribution -1.377 0.923 0.716 1.805 sum -10.448 16.406 -0.749 19.464 Atomic orbital electron populations 1.21861 0.96577 1.01199 1.01531 1.21430 0.94524 0.95573 1.03354 1.21811 0.97443 0.96273 0.97155 0.90824 1.21734 0.99193 0.81146 0.98246 1.48008 1.08803 1.06412 1.69818 1.17007 0.86196 0.82428 0.76824 1.90789 1.13201 1.85514 1.52411 1.24616 1.01098 0.97879 1.14412 1.20546 1.00452 0.89497 0.99030 1.18712 0.94310 0.97163 1.02954 1.20497 1.01810 0.91059 1.01796 1.25420 1.02542 1.02840 1.08694 1.83618 1.12387 0.97544 1.56010 1.22135 0.78978 1.00659 1.00635 1.22479 1.02440 0.98706 0.95091 1.20199 0.89424 0.90605 0.92312 0.91958 1.42850 1.19795 1.65809 1.10285 1.19053 0.92142 1.26655 0.99223 0.89111 1.24621 0.96437 1.00260 0.97458 1.69684 1.16314 1.41200 1.30831 0.86694 0.79483 0.77856 0.85282 1.21002 1.21730 1.20515 0.93009 0.92858 0.93066 0.91410 0.91139 0.91381 0.89021 0.83384 0.91269 0.91440 0.91641 0.81735 0.89753 0.90418 0.92771 0.89952 0.80617 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.16 0.36 -1.58 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C -0.11 -1.63 2.14 -90.50 -0.19 -1.83 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.90 5.03 -3.71 -0.02 1.88 16 6 N -0.60 -9.60 2.97 -174.34 -0.52 -10.12 16 7 C 0.59 9.69 7.58 -12.90 -0.10 9.59 16 8 O -0.54 -10.20 16.41 5.19 0.09 -10.12 16 9 C -0.26 -3.64 5.73 -36.79 -0.21 -3.85 16 10 C -0.06 -0.76 9.93 -40.43 -0.40 -1.17 16 11 C -0.12 -1.23 5.78 -106.46 -0.62 -1.85 16 12 C -0.09 -0.69 10.13 36.00 0.36 -0.33 16 13 C -0.26 -2.60 10.67 29.18 0.31 -2.29 16 14 S 0.23 2.76 19.34 -107.50 -2.08 0.68 16 15 C 0.10 1.54 5.26 -3.71 -0.02 1.52 16 16 C -0.15 -2.33 5.78 -26.61 -0.15 -2.48 16 17 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 18 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 19 N -0.74 -15.89 3.52 -53.39 -0.19 -16.08 16 20 C -0.24 -6.27 10.41 -15.06 -0.16 -6.43 16 21 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -28.18 13.97 55.49 0.78 -27.40 16 24 Si 0.88 21.29 27.74 -169.99 -4.71 16.58 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16 33 H 0.07 1.16 6.64 -51.93 -0.34 0.82 16 34 H 0.09 1.46 5.72 -51.93 -0.30 1.17 16 35 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.46 8.13 -51.92 -0.42 0.04 16 38 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 41 H 0.08 1.07 4.00 -26.42 -0.11 0.97 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.36 7.76 3.81 -40.82 -0.16 7.60 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -30.71 362.11 -9.13 -39.84 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.71 Total: 8.51 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.24 Total: -7.36 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.07 Total: -53.60 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.08 Total: 0.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.71 -9.13 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.477 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds