Wall clock time and date at job start Tue Mar 31 2020 13:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46740 * 2 1 4 4 H 1.08997 * 109.49705 * 304.93222 * 3 2 1 5 5 C 1.53189 * 109.49921 * 64.99979 * 3 2 1 6 6 N 1.46926 * 108.77336 * 174.59015 * 5 3 2 7 7 C 1.34779 * 120.63196 * 126.41367 * 6 5 3 8 8 O 1.21704 * 120.00090 * 353.63348 * 7 6 5 9 9 C 1.46581 * 119.99739 * 173.63589 * 7 6 5 10 10 C 1.36657 * 125.45701 * 148.85250 * 9 7 6 11 11 C 1.37473 * 113.29623 * 179.83777 * 10 9 7 12 12 C 1.50691 * 122.44996 * 180.18138 * 11 10 9 13 13 C 1.33816 * 115.10031 * 0.45185 * 11 10 9 14 14 S 1.70620 * 110.95736 * 359.75090 * 13 11 10 15 15 C 1.46927 * 118.73643 * 306.38452 * 6 5 3 16 16 C 1.53194 * 108.77456 * 53.61244 * 15 6 5 17 17 C 1.53039 * 109.31266 * 305.36504 * 16 15 6 18 18 H 1.08998 * 109.45871 * 181.38323 * 17 16 15 19 19 N 1.46497 * 109.45782 * 301.34107 * 17 16 15 20 20 C 1.36938 * 120.00554 * 275.00184 * 19 17 16 21 21 H 1.07997 * 119.99696 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00110 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99974 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00191 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46822 * 90.00569 * 24 22 20 26 26 H 1.48495 * 109.47239 * 210.00338 * 24 22 20 27 27 H 1.48496 * 109.47380 * 330.00575 * 24 22 20 28 28 H 1.09005 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47439 * 300.00142 * 1 2 3 30 30 H 1.08997 * 109.47183 * 60.00769 * 1 2 3 31 31 H 1.08995 * 109.47439 * 239.99858 * 2 1 3 32 32 H 1.09006 * 109.47270 * 119.99072 * 2 1 3 33 33 H 1.08993 * 109.59178 * 54.79770 * 5 3 2 34 34 H 1.09006 * 109.70227 * 294.43857 * 5 3 2 35 35 H 1.07997 * 123.34948 * 0.02562 * 10 9 7 36 36 H 1.09001 * 109.47585 * 270.27114 * 12 11 10 37 37 H 1.09008 * 109.47189 * 30.26956 * 12 11 10 38 38 H 1.08999 * 109.47402 * 150.26716 * 12 11 10 39 39 H 1.07999 * 124.52275 * 179.77286 * 13 11 10 40 40 H 1.09003 * 109.58735 * 293.82151 * 15 6 5 41 41 H 1.08999 * 109.70355 * 173.46953 * 15 6 5 42 42 H 1.08998 * 109.49455 * 65.31515 * 16 15 6 43 43 H 1.08996 * 109.49681 * 185.40946 * 16 15 6 44 44 H 0.97005 * 119.99932 * 95.00411 * 19 17 16 45 45 H 0.96997 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9816 -0.8424 5 6 1.6349 2.1281 1.3087 6 7 2.2413 3.4658 1.3492 7 6 1.4813 4.5580 1.5635 8 8 0.2694 4.4565 1.6103 9 6 2.1144 5.8682 1.7403 10 6 1.5695 7.0675 1.3767 11 6 2.3793 8.1413 1.6614 12 6 1.9793 9.5605 1.3508 13 6 3.5512 7.8336 2.2294 14 16 3.7000 6.1479 2.4471 15 6 3.6919 3.5900 1.1521 16 6 4.0739 2.8881 -0.1549 17 6 3.5654 1.4450 -0.1217 18 1 3.8573 0.9360 -1.0402 19 7 4.1479 0.7487 1.0281 20 6 5.3855 0.1717 0.9243 21 1 5.9319 0.2297 -0.0054 22 6 5.9371 -0.4885 2.0136 23 7 7.1268 -1.0426 1.9139 24 14 4.9916 -0.5893 3.6215 25 1 4.1477 -1.8113 3.6237 26 1 5.9484 -0.6465 4.7557 27 1 4.1269 0.6095 3.7633 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.9906 1.5399 2.1546 34 1 0.5496 2.2173 1.3563 35 1 0.5980 7.1625 0.9147 36 1 2.3122 9.8203 0.3459 37 1 0.8947 9.6535 1.4096 38 1 2.4413 10.2345 2.0721 39 1 4.3025 8.5559 2.5126 40 1 4.2154 3.1211 1.9853 41 1 3.9661 4.6434 1.0948 42 1 3.6217 3.4139 -0.9958 43 1 5.1583 2.8893 -0.2650 44 1 3.6569 0.6963 1.8631 45 1 7.5124 -1.5036 2.6752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037847490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:09 Heat of formation + Delta-G solvation = -10.584349 kcal Electronic energy + Delta-G solvation = -25933.574911 eV Core-core repulsion = 22463.067127 eV Total energy + Delta-G solvation = -3470.507783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54745 -39.69081 -38.72549 -36.05451 -35.44313 -33.59486 -32.14318 -31.53605 -30.15370 -28.67498 -27.13274 -25.46828 -25.06921 -24.45382 -22.21225 -21.25498 -20.18847 -19.93481 -19.82287 -18.84663 -17.47403 -17.08407 -16.81955 -16.33357 -16.03376 -15.91688 -15.33960 -15.09267 -14.92999 -14.73753 -14.50839 -14.40458 -14.22296 -14.04201 -13.86997 -13.50974 -13.21099 -13.06262 -12.96388 -12.80021 -12.75878 -12.67305 -12.51985 -12.29268 -12.07117 -11.87607 -11.70814 -11.60739 -11.53377 -11.21484 -11.15977 -10.89081 -9.97130 -9.68267 -9.31765 -9.17979 -7.97615 -5.28660 -0.47526 0.41227 0.95195 1.35799 1.36642 1.38149 1.44739 1.79667 2.04630 2.49333 3.34151 3.37695 3.58714 3.72999 3.89524 3.94385 4.06564 4.15565 4.20182 4.23001 4.33066 4.39269 4.41655 4.49141 4.61253 4.68795 4.74293 4.79310 4.84198 4.88735 4.94435 4.98695 5.06538 5.11883 5.14524 5.20258 5.22062 5.35602 5.39991 5.44609 5.49105 5.58081 5.84846 6.23136 6.26953 6.91860 7.12629 7.88899 8.07473 9.24212 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.004447 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.842747 B = 6295.355262 C = 7467.460503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.089 0.911 5 C 0.120 3.880 6 N -0.600 5.600 7 C 0.588 3.412 8 O -0.571 6.571 9 C -0.296 4.296 10 C -0.054 4.054 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.240 4.240 14 S 0.226 5.774 15 C 0.105 3.895 16 C -0.140 4.140 17 C 0.178 3.822 18 H 0.055 0.945 19 N -0.742 5.742 20 C -0.212 4.212 21 H 0.064 0.936 22 C -0.056 4.056 23 N -0.983 5.983 24 Si 0.936 3.064 25 H -0.282 1.282 26 H -0.300 1.300 27 H -0.259 1.259 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.151 0.849 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.194 0.806 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 19.161 -2.122 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.107 0.893 5 C -0.003 4.003 6 N -0.331 5.331 7 C 0.377 3.623 8 O -0.453 6.453 9 C -0.415 4.415 10 C -0.089 4.089 11 C -0.138 4.138 12 C -0.150 4.150 13 C -0.377 4.377 14 S 0.496 5.504 15 C -0.019 4.019 16 C -0.181 4.181 17 C 0.070 3.930 18 H 0.073 0.927 19 N -0.386 5.386 20 C -0.343 4.343 21 H 0.082 0.918 22 C -0.247 4.247 23 N -0.634 5.634 24 Si 0.765 3.235 25 H -0.209 1.209 26 H -0.227 1.227 27 H -0.184 1.184 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.169 0.831 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.211 0.789 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.196 0.804 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.540 18.091 -1.560 20.996 hybrid contribution -0.938 0.247 0.634 1.159 sum -11.478 18.338 -0.926 21.654 Atomic orbital electron populations 1.21801 0.94590 1.02100 1.02021 1.21400 0.96262 0.94788 1.02274 1.21712 0.95409 0.96903 0.97442 0.89256 1.21691 0.99329 0.81264 0.97968 1.48035 1.08848 1.06422 1.69758 1.17327 0.85864 0.83198 0.75889 1.90758 1.14484 1.86144 1.53903 1.24466 1.02716 0.97130 1.17238 1.20803 1.00627 0.89589 0.97835 1.18992 0.94021 0.98132 1.02619 1.20572 1.02395 0.89215 1.02835 1.25760 1.02912 1.02006 1.07022 1.83599 1.11230 0.99423 1.56129 1.22081 0.78617 1.01797 0.99373 1.22364 1.01801 0.97560 0.96344 1.20412 0.91037 0.91093 0.90469 0.92675 1.42804 1.18325 1.65843 1.11580 1.19003 0.93010 1.24642 0.97659 0.91818 1.25249 0.97412 1.01238 1.00841 1.69845 1.18448 1.43474 1.31652 0.85708 0.78214 0.78518 0.81086 1.20854 1.22658 1.18370 0.91973 0.92968 0.91924 0.91505 0.93183 0.92639 0.88769 0.83137 0.90216 0.90909 0.90105 0.78862 0.91783 0.88388 0.90526 0.91078 0.80442 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.67 71.98 0.70 -2.75 16 2 C -0.11 -3.10 5.19 30.60 0.16 -2.94 16 3 C -0.09 -2.78 2.14 -10.72 -0.02 -2.81 16 4 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 5 C 0.12 3.72 5.03 86.36 0.43 4.16 16 6 N -0.60 -18.63 2.97 -823.71 -2.45 -21.08 16 7 C 0.59 18.84 7.58 86.42 0.65 19.50 16 8 O -0.57 -21.25 16.41 -4.36 -0.07 -21.32 16 9 C -0.30 -7.86 5.73 24.08 0.14 -7.72 16 10 C -0.05 -1.23 9.93 21.72 0.22 -1.01 16 11 C -0.13 -2.22 5.78 -21.05 -0.12 -2.34 16 12 C -0.09 -1.03 10.13 71.23 0.72 -0.31 16 13 C -0.24 -4.04 10.67 66.81 0.71 -3.33 16 14 S 0.23 4.91 19.34 -56.49 -1.09 3.82 16 15 C 0.10 3.15 5.26 86.36 0.45 3.60 16 16 C -0.14 -4.32 5.78 30.67 0.18 -4.14 16 17 C 0.18 6.15 2.53 45.02 0.11 6.26 16 18 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 19 N -0.74 -31.63 3.52 -322.83 -1.14 -32.76 16 20 C -0.21 -11.22 10.41 84.03 0.87 -10.35 16 21 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 22 C -0.06 -3.16 5.50 84.86 0.47 -2.70 16 23 N -0.98 -61.14 13.97 21.65 0.30 -60.84 16 24 Si 0.94 44.55 27.74 68.60 1.90 46.46 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 26 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 27 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.05 1.23 6.70 -2.39 -0.02 1.21 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.63 7.69 -2.38 -0.02 1.61 16 33 H 0.06 1.86 6.64 -2.39 -0.02 1.85 16 34 H 0.09 2.91 5.72 -2.38 -0.01 2.90 16 35 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 38 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 39 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 41 H 0.10 2.57 4.00 -18.61 -0.07 2.50 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.36 15.39 3.81 -92.70 -0.35 15.03 16 45 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.20 362.11 3.65 -63.56 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.52 Total: 29.04 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.68 Total: -6.87 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -3.28 Total: -114.68 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.46 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.09 Total: 3.82 kcal Total: -67.20 3.65 -63.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.972 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds