Wall clock time and date at job start Tue Mar 31 2020 13:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47529 * 2 1 4 4 H 1.09003 * 109.52289 * 305.08494 * 3 2 1 5 5 C 1.53192 * 109.49599 * 65.15673 * 3 2 1 6 6 N 1.46924 * 108.77494 * 174.58886 * 5 3 2 7 7 C 1.34776 * 120.63057 * 126.41823 * 6 5 3 8 8 O 1.21692 * 120.00310 * 353.61059 * 7 6 5 9 9 C 1.46591 * 119.99966 * 173.61374 * 7 6 5 10 10 C 1.36644 * 125.45599 * 149.63645 * 9 7 6 11 11 C 1.37472 * 113.29265 * 179.97438 * 10 9 7 12 12 C 1.50705 * 122.44721 * 180.02562 * 11 10 9 13 13 C 1.33814 * 115.10436 * 359.97438 * 11 10 9 14 14 S 1.70617 * 110.95352 * 359.72617 * 13 11 10 15 15 C 1.46929 * 118.74078 * 306.39487 * 6 5 3 16 16 C 1.53194 * 108.77748 * 53.60627 * 15 6 5 17 17 C 1.53041 * 109.49994 * 184.99800 * 3 2 1 18 18 H 1.08997 * 109.44976 * 298.70053 * 17 3 2 19 19 N 1.46500 * 109.45702 * 58.66740 * 17 3 2 20 20 C 1.36940 * 119.99555 * 205.06764 * 19 17 3 21 21 H 1.08004 * 120.00008 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00249 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99495 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00553 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47323 * 89.99959 * 24 22 20 26 26 H 1.48503 * 109.46579 * 330.00102 * 24 22 20 27 27 H 1.48497 * 109.47075 * 210.00332 * 24 22 20 28 28 H 1.09001 * 109.46763 * 59.99871 * 1 2 3 29 29 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47142 * 300.00576 * 1 2 3 31 31 H 1.09000 * 109.47321 * 239.99947 * 2 1 3 32 32 H 1.09001 * 109.46763 * 120.00129 * 2 1 3 33 33 H 1.09006 * 109.58515 * 54.80557 * 5 3 2 34 34 H 1.08992 * 109.70829 * 294.44623 * 5 3 2 35 35 H 1.07999 * 123.35336 * 359.97438 * 10 9 7 36 36 H 1.08988 * 109.47444 * 90.00073 * 12 11 10 37 37 H 1.09006 * 109.47053 * 210.00214 * 12 11 10 38 38 H 1.09004 * 109.47047 * 329.99671 * 12 11 10 39 39 H 1.08003 * 124.52399 * 179.97438 * 13 11 10 40 40 H 1.09008 * 109.58676 * 293.82487 * 15 6 5 41 41 H 1.09002 * 109.59036 * 173.39871 * 15 6 5 42 42 H 1.08994 * 109.50231 * 185.41991 * 16 15 6 43 43 H 1.08998 * 109.51916 * 65.33171 * 16 15 6 44 44 H 0.97000 * 120.00496 * 25.06515 * 19 17 3 45 45 H 0.96998 * 120.00016 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2451 3.4643 1.3507 7 6 1.4858 4.5564 1.5681 8 8 0.2742 4.4551 1.6175 9 6 2.1196 5.8663 1.7450 10 6 1.5677 7.0672 1.3981 11 6 2.3812 8.1400 1.6760 12 6 1.9762 9.5606 1.3777 13 6 3.5586 7.8306 2.2317 14 16 3.7078 6.1446 2.4463 15 6 3.6953 3.5887 1.1498 16 6 4.0738 2.8881 -0.1588 17 6 3.5653 1.4449 -0.1257 18 1 4.0007 0.9260 0.7282 19 7 3.9542 0.7620 -1.3620 20 6 5.1918 0.1850 -1.4653 21 1 5.8810 0.2331 -0.6351 22 6 5.5602 -0.4626 -2.6365 23 7 4.7201 -0.5216 -3.6480 24 14 7.2482 -1.2503 -2.7771 25 1 7.1771 -2.6593 -2.3138 26 1 8.2157 -0.5009 -1.9360 27 1 7.6936 -1.2167 -4.1933 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9965 1.5376 2.1549 34 1 0.5535 2.2160 1.3610 35 1 0.5897 7.1640 0.9501 36 1 1.4585 9.9796 2.2403 37 1 2.8649 10.1544 1.1635 38 1 1.3125 9.5753 0.5131 39 1 4.3120 8.5523 2.5110 40 1 4.2210 3.1188 1.9811 41 1 3.9671 4.6427 1.0919 42 1 5.1579 2.8892 -0.2719 43 1 3.6198 3.4145 -0.9983 44 1 3.3351 0.7185 -2.1075 45 1 3.8435 -0.1129 -3.5749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037847491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:14 Heat of formation + Delta-G solvation = 0.897465 kcal Electronic energy + Delta-G solvation = -25442.890349 eV Core-core repulsion = 21972.880454 eV Total energy + Delta-G solvation = -3470.009895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28005 -38.56713 -37.57383 -34.93108 -34.01456 -31.87050 -31.29364 -29.50014 -28.77973 -27.91204 -25.59703 -24.02131 -23.70438 -22.71020 -20.98842 -20.22360 -19.47638 -19.17487 -17.91691 -17.30802 -16.39566 -16.10624 -15.36236 -14.98328 -14.89315 -14.24537 -14.07896 -13.90917 -13.63583 -13.49949 -13.42521 -13.29291 -13.16642 -12.89454 -12.55604 -12.31711 -12.25977 -12.08120 -11.77690 -11.75288 -11.39063 -11.03010 -10.90867 -10.72848 -10.61764 -10.33273 -10.26504 -10.05725 -9.95693 -9.87077 -9.19387 -9.05167 -8.93841 -8.55875 -8.42841 -7.05145 -6.11644 -3.11982 0.39129 1.26755 1.72305 2.21094 2.87177 3.15161 3.49749 3.54194 3.68167 4.40537 4.64083 4.73403 4.88032 4.94216 5.08622 5.12236 5.15769 5.24908 5.32238 5.34666 5.35856 5.47284 5.55717 5.57775 5.63012 5.63799 5.69536 5.80969 5.92172 6.03114 6.06008 6.10164 6.16121 6.19290 6.26860 6.29672 6.35877 6.47120 6.57194 6.72552 6.83197 6.95496 7.37019 7.78645 8.08250 8.73705 9.20148 10.06638 10.22053 11.36503 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003515 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.782019 B = 7962.894106 C = 9224.066705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.601 5.601 7 C 0.589 3.411 8 O -0.536 6.536 9 C -0.259 4.259 10 C -0.060 4.060 11 C -0.117 4.117 12 C -0.093 4.093 13 C -0.255 4.255 14 S 0.224 5.776 15 C 0.094 3.906 16 C -0.147 4.147 17 C 0.189 3.811 18 H 0.050 0.950 19 N -0.731 5.731 20 C -0.330 4.330 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.944 5.944 24 Si 1.081 2.919 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.289 1.289 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.166 0.834 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.367 0.633 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 15.523 13.607 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.333 5.333 7 C 0.377 3.623 8 O -0.415 6.415 9 C -0.379 4.379 10 C -0.093 4.093 11 C -0.130 4.130 12 C -0.152 4.152 13 C -0.392 4.392 14 S 0.494 5.506 15 C -0.030 4.030 16 C -0.188 4.188 17 C 0.079 3.921 18 H 0.068 0.932 19 N -0.373 5.373 20 C -0.461 4.461 21 H 0.082 0.918 22 C -0.242 4.242 23 N -0.589 5.589 24 Si 0.912 3.088 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.215 1.215 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.183 0.817 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.200 0.800 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.409 13.642 13.411 19.281 hybrid contribution -2.037 1.996 0.192 2.859 sum -4.446 15.639 13.603 21.199 Atomic orbital electron populations 1.21847 0.96621 1.01144 1.01422 1.21433 0.94517 0.95549 1.03355 1.21809 0.97680 0.96309 0.96827 0.91216 1.21783 0.99558 0.80841 0.97902 1.48013 1.08610 1.06652 1.70031 1.17006 0.86210 0.82399 0.76731 1.90800 1.13175 1.85401 1.52096 1.24587 1.00870 0.97851 1.14594 1.20587 1.00456 0.89512 0.98740 1.18740 0.94128 0.97252 1.02849 1.20509 1.01776 0.90993 1.01965 1.25380 1.02599 1.02550 1.08678 1.83326 1.12733 0.97993 1.56555 1.22266 0.79426 1.01503 0.99835 1.22641 1.02398 0.99059 0.94744 1.20121 0.90650 0.90393 0.90956 0.93214 1.42417 1.16581 1.65581 1.12681 1.20037 0.92468 1.32021 1.01564 0.91768 1.25723 1.05801 1.00251 0.92399 1.70848 1.08382 1.47557 1.32108 0.83220 0.74274 0.75718 0.75597 1.22371 1.22191 1.21467 0.92985 0.93051 0.93075 0.90201 0.92289 0.91355 0.88872 0.83260 0.91235 0.91544 0.91344 0.81680 0.90950 0.89985 0.90283 0.92227 0.79952 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.68 37.16 0.36 -1.75 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.92 16 3 C -0.11 -1.75 1.92 -90.50 -0.17 -1.92 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.79 5.34 -3.71 -0.02 1.77 16 6 N -0.60 -8.89 2.97 -174.34 -0.52 -9.41 16 7 C 0.59 9.24 7.58 -12.89 -0.10 9.14 16 8 O -0.54 -9.85 16.40 5.20 0.09 -9.76 16 9 C -0.26 -3.41 5.73 -36.79 -0.21 -3.62 16 10 C -0.06 -0.72 9.92 -40.44 -0.40 -1.12 16 11 C -0.12 -1.16 5.78 -106.45 -0.62 -1.77 16 12 C -0.09 -0.67 10.13 36.01 0.36 -0.31 16 13 C -0.25 -2.35 10.67 29.18 0.31 -2.04 16 14 S 0.22 2.29 19.34 -107.50 -2.08 0.21 16 15 C 0.09 1.29 5.52 -3.71 -0.02 1.27 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.19 3.57 2.19 -67.89 -0.15 3.42 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.73 -17.32 4.33 -53.38 -0.23 -17.55 16 20 C -0.33 -8.85 9.93 -15.06 -0.15 -9.00 16 21 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 22 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 23 N -0.94 -28.60 13.70 55.49 0.76 -27.84 16 24 Si 1.08 25.43 29.92 -169.99 -5.09 20.34 16 25 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 31 H 0.08 1.52 7.22 -51.93 -0.37 1.15 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.42 5.72 -51.93 -0.30 1.12 16 35 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.07 0.44 8.14 -51.94 -0.42 0.02 16 37 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 39 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 40 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.08 1.02 4.00 -26.35 -0.11 0.92 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.37 9.17 6.35 -40.82 -0.26 8.92 16 45 H 0.26 7.64 6.77 -40.82 -0.28 7.36 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -31.72 367.14 -9.51 -41.23 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.78 Total: 9.08 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.19 Total: -11.84 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.01 Total: -54.80 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.08 Total: 0.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.72 -9.51 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.129 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds