Wall clock time and date at job start Tue Mar 31 2020 13:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47529 * 2 1 4 4 H 1.09003 * 109.52289 * 305.08494 * 3 2 1 5 5 C 1.53192 * 109.49599 * 65.15673 * 3 2 1 6 6 N 1.46924 * 108.77494 * 174.58886 * 5 3 2 7 7 C 1.34776 * 120.63057 * 126.41823 * 6 5 3 8 8 O 1.21692 * 120.00310 * 353.61059 * 7 6 5 9 9 C 1.46591 * 119.99966 * 173.61374 * 7 6 5 10 10 C 1.36644 * 125.45599 * 149.63645 * 9 7 6 11 11 C 1.37472 * 113.29265 * 179.97438 * 10 9 7 12 12 C 1.50705 * 122.44721 * 180.02562 * 11 10 9 13 13 C 1.33814 * 115.10436 * 359.97438 * 11 10 9 14 14 S 1.70617 * 110.95352 * 359.72617 * 13 11 10 15 15 C 1.46929 * 118.74078 * 306.39487 * 6 5 3 16 16 C 1.53194 * 108.77748 * 53.60627 * 15 6 5 17 17 C 1.53041 * 109.49994 * 184.99800 * 3 2 1 18 18 H 1.08997 * 109.44976 * 298.70053 * 17 3 2 19 19 N 1.46500 * 109.45702 * 58.66740 * 17 3 2 20 20 C 1.36940 * 119.99555 * 205.06764 * 19 17 3 21 21 H 1.08004 * 120.00008 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00249 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99495 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00553 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47323 * 89.99959 * 24 22 20 26 26 H 1.48503 * 109.46579 * 330.00102 * 24 22 20 27 27 H 1.48497 * 109.47075 * 210.00332 * 24 22 20 28 28 H 1.09001 * 109.46763 * 59.99871 * 1 2 3 29 29 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47142 * 300.00576 * 1 2 3 31 31 H 1.09000 * 109.47321 * 239.99947 * 2 1 3 32 32 H 1.09001 * 109.46763 * 120.00129 * 2 1 3 33 33 H 1.09006 * 109.58515 * 54.80557 * 5 3 2 34 34 H 1.08992 * 109.70829 * 294.44623 * 5 3 2 35 35 H 1.07999 * 123.35336 * 359.97438 * 10 9 7 36 36 H 1.08988 * 109.47444 * 90.00073 * 12 11 10 37 37 H 1.09006 * 109.47053 * 210.00214 * 12 11 10 38 38 H 1.09004 * 109.47047 * 329.99671 * 12 11 10 39 39 H 1.08003 * 124.52399 * 179.97438 * 13 11 10 40 40 H 1.09008 * 109.58676 * 293.82487 * 15 6 5 41 41 H 1.09002 * 109.59036 * 173.39871 * 15 6 5 42 42 H 1.08994 * 109.50231 * 185.41991 * 16 15 6 43 43 H 1.08998 * 109.51916 * 65.33171 * 16 15 6 44 44 H 0.97000 * 120.00496 * 25.06515 * 19 17 3 45 45 H 0.96998 * 120.00016 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2451 3.4643 1.3507 7 6 1.4858 4.5564 1.5681 8 8 0.2742 4.4551 1.6175 9 6 2.1196 5.8663 1.7450 10 6 1.5677 7.0672 1.3981 11 6 2.3812 8.1400 1.6760 12 6 1.9762 9.5606 1.3777 13 6 3.5586 7.8306 2.2317 14 16 3.7078 6.1446 2.4463 15 6 3.6953 3.5887 1.1498 16 6 4.0738 2.8881 -0.1588 17 6 3.5653 1.4449 -0.1257 18 1 4.0007 0.9260 0.7282 19 7 3.9542 0.7620 -1.3620 20 6 5.1918 0.1850 -1.4653 21 1 5.8810 0.2331 -0.6351 22 6 5.5602 -0.4626 -2.6365 23 7 4.7201 -0.5216 -3.6480 24 14 7.2482 -1.2503 -2.7771 25 1 7.1771 -2.6593 -2.3138 26 1 8.2157 -0.5009 -1.9360 27 1 7.6936 -1.2167 -4.1933 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9965 1.5376 2.1549 34 1 0.5535 2.2160 1.3610 35 1 0.5897 7.1640 0.9501 36 1 1.4585 9.9796 2.2403 37 1 2.8649 10.1544 1.1635 38 1 1.3125 9.5753 0.5131 39 1 4.3120 8.5523 2.5110 40 1 4.2210 3.1188 1.9811 41 1 3.9671 4.6427 1.0919 42 1 5.1579 2.8892 -0.2719 43 1 3.6198 3.4145 -0.9983 44 1 3.3351 0.7185 -2.1075 45 1 3.8435 -0.1129 -3.5749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037847491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:13 Heat of formation + Delta-G solvation = -17.246295 kcal Electronic energy + Delta-G solvation = -25443.677121 eV Core-core repulsion = 21972.880454 eV Total energy + Delta-G solvation = -3470.796667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50633 -39.63181 -38.73303 -36.48790 -35.54366 -33.55807 -32.17661 -31.02429 -30.09638 -28.67227 -26.95029 -25.54121 -25.03699 -24.13814 -22.39518 -21.43086 -20.67988 -20.06612 -19.31238 -18.97146 -17.60410 -17.10958 -16.65144 -16.57581 -16.10452 -15.73744 -15.39606 -15.16544 -14.91560 -14.80137 -14.63323 -14.43063 -14.15901 -14.04156 -13.67371 -13.53969 -13.20827 -13.08487 -12.82168 -12.80039 -12.75770 -12.59627 -12.46565 -12.20259 -11.87549 -11.81662 -11.69225 -11.64872 -11.46935 -11.22326 -11.07043 -10.84365 -10.00980 -9.72044 -9.27375 -9.03801 -8.33360 -5.27348 -0.49602 0.40601 0.92100 1.33574 1.60246 1.70486 1.73287 1.83944 2.04865 2.73973 3.34083 3.44321 3.62826 3.66243 3.86425 3.91180 4.05324 4.08386 4.17905 4.20022 4.30020 4.35191 4.37980 4.52462 4.58564 4.66901 4.67662 4.68974 4.75500 4.81592 4.85988 4.91614 4.94773 5.03568 5.06434 5.19381 5.24394 5.34951 5.38677 5.41864 5.46525 5.53336 5.65363 6.18630 6.53464 6.89517 7.12876 8.02954 8.16704 9.18248 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003515 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.782019 B = 7962.894106 C = 9224.066705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.094 4.094 4 H 0.049 0.951 5 C 0.127 3.873 6 N -0.602 5.602 7 C 0.587 3.413 8 O -0.572 6.572 9 C -0.300 4.300 10 C -0.061 4.061 11 C -0.129 4.129 12 C -0.092 4.092 13 C -0.241 4.241 14 S 0.253 5.747 15 C 0.102 3.898 16 C -0.138 4.138 17 C 0.185 3.815 18 H 0.051 0.949 19 N -0.742 5.742 20 C -0.319 4.319 21 H 0.070 0.930 22 C -0.107 4.107 23 N -0.980 5.980 24 Si 1.127 2.873 25 H -0.288 1.288 26 H -0.270 1.270 27 H -0.299 1.299 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.197 0.803 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.356 0.644 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 17.166 15.928 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.114 4.114 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.334 5.334 7 C 0.376 3.624 8 O -0.454 6.454 9 C -0.419 4.419 10 C -0.096 4.096 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.378 4.378 14 S 0.523 5.477 15 C -0.021 4.021 16 C -0.179 4.179 17 C 0.076 3.924 18 H 0.069 0.931 19 N -0.383 5.383 20 C -0.450 4.450 21 H 0.088 0.912 22 C -0.298 4.298 23 N -0.628 5.628 24 Si 0.953 3.047 25 H -0.215 1.215 26 H -0.195 1.195 27 H -0.225 1.225 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.214 0.786 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.188 0.812 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.045 15.315 15.791 22.022 hybrid contribution -2.479 1.587 -0.466 2.981 sum -3.524 16.902 15.325 23.086 Atomic orbital electron populations 1.21784 0.94689 1.02073 1.01787 1.21341 0.96200 0.94842 1.01949 1.21653 0.95797 0.96661 0.97334 0.93216 1.21718 0.99562 0.81115 0.97179 1.48060 1.08972 1.06539 1.69784 1.17367 0.85863 0.83276 0.75848 1.90766 1.14734 1.86083 1.53838 1.24484 1.03223 0.96842 1.17401 1.20790 1.00576 0.90022 0.98172 1.18964 0.94138 0.97978 1.03067 1.20570 1.02633 0.89469 1.02448 1.25783 1.02753 1.02479 1.06795 1.83092 1.10244 0.98812 1.55535 1.22275 0.78967 1.02441 0.98467 1.22432 1.01538 0.97712 0.96211 1.20343 0.92276 0.90930 0.88810 0.93118 1.42602 1.15635 1.66127 1.13931 1.20369 0.93264 1.30234 1.01174 0.91177 1.27069 1.08570 1.01576 0.92537 1.70962 1.08540 1.49829 1.33514 0.82622 0.71167 0.75612 0.75344 1.21486 1.19513 1.22538 0.93696 0.91860 0.91596 0.93753 0.91387 0.89313 0.89154 0.83861 0.90255 0.89975 0.91301 0.78623 0.88628 0.88353 0.91061 0.94056 0.81194 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.68 71.98 0.70 -3.28 16 2 C -0.11 -3.41 5.31 30.59 0.16 -3.25 16 3 C -0.09 -3.14 1.92 -10.72 -0.02 -3.16 16 4 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.13 3.62 5.34 86.36 0.46 4.08 16 6 N -0.60 -17.24 2.97 -823.70 -2.45 -19.69 16 7 C 0.59 18.17 7.58 86.42 0.66 18.83 16 8 O -0.57 -21.26 16.40 -4.32 -0.07 -21.33 16 9 C -0.30 -7.57 5.73 24.08 0.14 -7.43 16 10 C -0.06 -1.41 9.92 21.72 0.22 -1.19 16 11 C -0.13 -2.26 5.78 -21.05 -0.12 -2.38 16 12 C -0.09 -1.09 10.13 71.24 0.72 -0.37 16 13 C -0.24 -3.60 10.67 66.81 0.71 -2.89 16 14 S 0.25 4.48 19.34 -56.49 -1.09 3.39 16 15 C 0.10 2.63 5.52 86.36 0.48 3.10 16 16 C -0.14 -4.63 5.66 30.67 0.17 -4.46 16 17 C 0.18 6.98 2.19 45.02 0.10 7.08 16 18 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 19 N -0.74 -36.04 4.33 -322.80 -1.40 -37.43 16 20 C -0.32 -17.19 9.93 84.03 0.83 -16.36 16 21 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.11 -6.07 5.50 84.86 0.47 -5.61 16 23 N -0.98 -61.12 13.70 21.65 0.30 -60.83 16 24 Si 1.13 51.24 29.92 68.60 2.05 53.29 16 25 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.61 6.70 -2.39 -0.02 1.59 16 31 H 0.04 1.76 7.22 -2.39 -0.02 1.74 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.09 2.70 5.72 -2.39 -0.01 2.69 16 35 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 38 H 0.07 0.80 8.13 -2.39 -0.02 0.79 16 39 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.10 2.25 4.00 -18.65 -0.07 2.18 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.36 18.70 6.35 -92.71 -0.59 18.11 16 45 H 0.24 15.18 6.77 -92.71 -0.63 14.55 16 Total: -1.00 -70.34 367.14 3.49 -66.85 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.48 Total: 33.04 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.67 Total: -17.28 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.55 Total: -117.95 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.09 Total: 3.39 kcal Total: -70.34 3.49 -66.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.600 kcal (2) G-P(sol) polarization free energy of solvation -70.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds