Wall clock time and date at job start Tue Mar 31 2020 13:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 H 1.09003 * 109.49845 * 305.06191 * 3 2 1 5 5 C 1.53187 * 109.49988 * 65.16301 * 3 2 1 6 6 N 1.46916 * 108.77736 * 174.58830 * 5 3 2 7 7 C 1.34783 * 120.63363 * 126.66605 * 6 5 3 8 8 O 1.21634 * 119.99261 * 353.30395 * 7 6 5 9 9 C 1.47187 * 120.00204 * 173.30581 * 7 6 5 10 10 C 1.36014 * 123.45850 * 326.44426 * 9 7 6 11 11 S 1.70447 * 110.81253 * 179.85996 * 10 9 7 12 12 C 1.75499 * 92.44727 * 0.35131 * 11 10 9 13 13 C 1.50697 * 124.71290 * 179.80426 * 12 11 10 14 14 C 1.32768 * 110.57658 * 359.79924 * 12 11 10 15 15 C 1.46932 * 118.73979 * 306.38808 * 6 5 3 16 16 C 1.53191 * 108.77151 * 53.61088 * 15 6 5 17 17 C 1.53036 * 109.31338 * 305.36437 * 16 15 6 18 18 H 1.09005 * 109.46259 * 181.37432 * 17 16 15 19 19 N 1.46498 * 109.46071 * 301.34905 * 17 16 15 20 20 C 1.36941 * 119.99819 * 274.99832 * 19 17 16 21 21 H 1.08003 * 119.99874 * 0.02562 * 20 19 17 22 22 C 1.38808 * 120.00282 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99946 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00287 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47121 * 89.99975 * 24 22 20 26 26 H 1.48496 * 109.47181 * 209.99763 * 24 22 20 27 27 H 1.48495 * 109.46891 * 329.99922 * 24 22 20 28 28 H 1.09000 * 109.46890 * 60.00162 * 1 2 3 29 29 H 1.09003 * 109.46709 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46757 * 299.99961 * 1 2 3 31 31 H 1.09005 * 109.47344 * 240.00108 * 2 1 3 32 32 H 1.09001 * 109.47611 * 120.00014 * 2 1 3 33 33 H 1.08997 * 109.58726 * 54.79708 * 5 3 2 34 34 H 1.09004 * 109.58556 * 294.37708 * 5 3 2 35 35 H 1.07996 * 124.59157 * 359.97438 * 10 9 7 36 36 H 1.09008 * 109.47355 * 269.99577 * 13 12 11 37 37 H 1.08995 * 109.47315 * 29.99551 * 13 12 11 38 38 H 1.08997 * 109.47330 * 149.99878 * 13 12 11 39 39 H 1.08003 * 123.45974 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.58672 * 173.39619 * 15 6 5 41 41 H 1.09000 * 109.58653 * 293.82429 * 15 6 5 42 42 H 1.09001 * 109.50121 * 65.31657 * 16 15 6 43 43 H 1.09000 * 109.49671 * 185.38228 * 16 15 6 44 44 H 0.96992 * 120.00461 * 95.00459 * 19 17 16 45 45 H 0.96996 * 120.00569 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8411 5 6 1.6385 2.1268 1.3104 6 7 2.2450 3.4644 1.3506 7 6 1.4864 4.5560 1.5731 8 8 0.2752 4.4552 1.6216 9 6 2.1236 5.8700 1.7573 10 6 3.3325 6.0397 2.3571 11 16 3.7634 7.6883 2.3953 12 6 2.2788 8.1725 1.5944 13 6 1.9092 9.5943 1.2585 14 6 1.5265 7.1121 1.3254 15 6 3.6952 3.5889 1.1498 16 6 4.0736 2.8883 -0.1589 17 6 3.5652 1.4452 -0.1258 18 1 3.8544 0.9370 -1.0458 19 7 4.1507 0.7477 1.0218 20 6 5.3880 0.1708 0.9140 21 1 5.9323 0.2304 -0.0170 22 6 5.9425 -0.4906 2.0011 23 7 5.2794 -0.5628 3.1357 24 14 7.6306 -1.2769 1.8542 25 1 8.6715 -0.2903 2.2395 26 1 7.7079 -2.4551 2.7548 27 1 7.8543 -1.7104 0.4517 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9965 1.5378 2.1548 34 1 0.5532 2.2161 1.3585 35 1 3.9381 5.2382 2.7535 36 1 1.3585 10.0329 2.0908 37 1 2.8154 10.1723 1.0777 38 1 1.2862 9.6062 0.3643 39 1 0.5668 7.1721 0.8337 40 1 3.9669 4.6429 1.0918 41 1 4.2209 3.1191 1.9810 42 1 3.6191 3.4149 -0.9982 43 1 5.1576 2.8901 -0.2723 44 1 3.6620 0.6944 1.8579 45 1 5.6670 -1.0246 3.8956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037946659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:35 Heat of formation + Delta-G solvation = 3.064349 kcal Electronic energy + Delta-G solvation = -25821.611598 eV Core-core repulsion = 22351.695666 eV Total energy + Delta-G solvation = -3469.915931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26306 -38.12898 -36.88925 -34.51709 -33.75150 -32.21958 -31.66037 -29.44391 -28.58213 -26.82913 -25.84016 -23.84801 -23.68716 -23.20862 -20.81647 -20.27474 -19.23585 -18.38744 -17.41005 -17.09835 -16.52145 -15.74152 -14.98318 -14.84017 -14.61036 -14.06109 -14.04176 -13.96544 -13.65767 -13.30377 -13.28001 -13.12391 -13.00483 -12.56167 -12.41561 -12.27596 -12.13416 -12.09297 -11.60180 -11.39434 -11.09724 -11.03099 -10.95870 -10.79201 -10.70096 -10.28842 -10.25087 -10.17857 -9.78624 -9.60285 -9.54790 -8.96374 -8.79859 -8.49542 -8.17119 -6.99078 -5.80936 -3.09320 0.75938 1.42529 1.82434 2.04658 3.18671 3.39598 3.45839 3.46167 3.47147 4.55645 4.57049 4.83608 4.99586 5.07998 5.19157 5.28048 5.30316 5.33492 5.37426 5.52872 5.55569 5.58020 5.64966 5.71260 5.81638 5.83162 5.84881 5.92782 5.99371 6.08849 6.16150 6.20036 6.23645 6.35968 6.39911 6.42443 6.57490 6.65697 6.71261 6.78417 6.94805 7.02244 7.66911 7.72349 8.37583 8.40472 9.49273 10.06061 10.41369 11.41413 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.004005 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.888861 B = 6990.175215 C = 8554.260458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.575 3.425 8 O -0.549 6.549 9 C -0.143 4.143 10 C -0.211 4.211 11 S 0.173 5.827 12 C -0.207 4.207 13 C -0.079 4.079 14 C -0.092 4.092 15 C 0.101 3.899 16 C -0.149 4.149 17 C 0.178 3.822 18 H 0.051 0.949 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.179 0.821 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 16.276 -4.379 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.361 3.639 8 O -0.429 6.429 9 C -0.161 4.161 10 C -0.349 4.349 11 S 0.439 5.561 12 C -0.323 4.323 13 C -0.138 4.138 14 C -0.121 4.121 15 C -0.021 4.021 16 C -0.190 4.190 17 C 0.068 3.932 18 H 0.069 0.931 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.209 1.209 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.196 0.804 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.166 0.834 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.975 16.896 -3.849 18.029 hybrid contribution -0.181 -1.487 -0.220 1.514 sum -5.155 15.409 -4.069 16.751 Atomic orbital electron populations 1.21853 0.96806 1.01008 1.01386 1.21416 0.94285 0.95716 1.03353 1.21745 0.97357 0.96132 0.97035 0.91543 1.21713 0.98855 0.81295 0.98382 1.47979 1.08830 1.06378 1.69239 1.17655 0.86252 0.83174 0.76782 1.90747 1.13640 1.85979 1.52552 1.20236 0.95413 0.94736 1.05676 1.25935 1.00422 1.02594 1.05926 1.82988 1.19120 0.97457 1.56534 1.24331 0.99455 0.99994 1.08544 1.20311 1.01920 0.89312 1.02260 1.20975 1.00567 0.89183 1.01380 1.22150 0.79215 1.00824 0.99942 1.22519 1.01727 0.99234 0.95542 1.20228 0.89757 0.90627 0.92604 0.93131 1.42476 1.19107 1.63952 1.10562 1.19221 0.93618 1.26902 0.97075 0.91274 1.24693 0.98522 1.01479 0.96038 1.69646 1.38069 1.48119 1.02231 0.86246 0.84426 0.78775 0.77061 1.21856 1.21899 1.20854 0.93362 0.93169 0.92786 0.92030 0.90502 0.90660 0.89492 0.80415 0.90774 0.91299 0.90548 0.83389 0.90112 0.89775 0.93309 0.90759 0.78117 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.70 2.14 -90.50 -0.19 -1.89 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.07 5.04 -3.72 -0.02 2.05 16 6 N -0.59 -9.98 2.97 -174.13 -0.52 -10.50 16 7 C 0.57 9.95 7.50 -12.62 -0.09 9.85 16 8 O -0.55 -10.97 16.41 5.25 0.09 -10.88 16 9 C -0.14 -2.08 5.38 -104.63 -0.56 -2.64 16 10 C -0.21 -2.68 8.35 29.93 0.25 -2.43 16 11 S 0.17 1.75 23.00 -107.50 -2.47 -0.72 16 12 C -0.21 -2.15 6.44 -36.18 -0.23 -2.38 16 13 C -0.08 -0.57 10.34 36.00 0.37 -0.20 16 14 C -0.09 -1.16 10.11 -39.02 -0.39 -1.56 16 15 C 0.10 1.63 4.72 -3.71 -0.02 1.61 16 16 C -0.15 -2.49 5.78 -26.61 -0.15 -2.64 16 17 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 N -0.72 -16.31 3.72 -53.38 -0.20 -16.51 16 20 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 21 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 24 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 33 H 0.08 1.43 6.64 -51.93 -0.34 1.08 16 34 H 0.09 1.52 5.72 -51.93 -0.30 1.22 16 35 H 0.18 2.23 6.42 -52.49 -0.34 1.89 16 36 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.08 1.14 4.47 -51.93 -0.23 0.91 16 41 H 0.08 1.55 7.73 -51.93 -0.40 1.15 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.38 9.36 5.94 -40.82 -0.24 9.11 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -29.77 365.53 -9.93 -39.70 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.80 Total: 10.32 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.24 Total: -7.42 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.01 Total: -53.07 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.47 Total: -0.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.77 -9.93 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037946659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.761 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds