Wall clock time and date at job start Tue Mar 31 2020 13:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 H 1.09003 * 109.49845 * 305.06191 * 3 2 1 5 5 C 1.53187 * 109.49988 * 65.16301 * 3 2 1 6 6 N 1.46916 * 108.77736 * 174.58830 * 5 3 2 7 7 C 1.34783 * 120.63363 * 126.66605 * 6 5 3 8 8 O 1.21634 * 119.99261 * 353.30395 * 7 6 5 9 9 C 1.47187 * 120.00204 * 173.30581 * 7 6 5 10 10 C 1.36014 * 123.45850 * 326.44426 * 9 7 6 11 11 S 1.70447 * 110.81253 * 179.85996 * 10 9 7 12 12 C 1.75499 * 92.44727 * 0.35131 * 11 10 9 13 13 C 1.50697 * 124.71290 * 179.80426 * 12 11 10 14 14 C 1.32768 * 110.57658 * 359.79924 * 12 11 10 15 15 C 1.46932 * 118.73979 * 306.38808 * 6 5 3 16 16 C 1.53191 * 108.77151 * 53.61088 * 15 6 5 17 17 C 1.53036 * 109.31338 * 305.36437 * 16 15 6 18 18 H 1.09005 * 109.46259 * 181.37432 * 17 16 15 19 19 N 1.46498 * 109.46071 * 301.34905 * 17 16 15 20 20 C 1.36941 * 119.99819 * 274.99832 * 19 17 16 21 21 H 1.08003 * 119.99874 * 0.02562 * 20 19 17 22 22 C 1.38808 * 120.00282 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99946 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00287 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47121 * 89.99975 * 24 22 20 26 26 H 1.48496 * 109.47181 * 209.99763 * 24 22 20 27 27 H 1.48495 * 109.46891 * 329.99922 * 24 22 20 28 28 H 1.09000 * 109.46890 * 60.00162 * 1 2 3 29 29 H 1.09003 * 109.46709 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46757 * 299.99961 * 1 2 3 31 31 H 1.09005 * 109.47344 * 240.00108 * 2 1 3 32 32 H 1.09001 * 109.47611 * 120.00014 * 2 1 3 33 33 H 1.08997 * 109.58726 * 54.79708 * 5 3 2 34 34 H 1.09004 * 109.58556 * 294.37708 * 5 3 2 35 35 H 1.07996 * 124.59157 * 359.97438 * 10 9 7 36 36 H 1.09008 * 109.47355 * 269.99577 * 13 12 11 37 37 H 1.08995 * 109.47315 * 29.99551 * 13 12 11 38 38 H 1.08997 * 109.47330 * 149.99878 * 13 12 11 39 39 H 1.08003 * 123.45974 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.58672 * 173.39619 * 15 6 5 41 41 H 1.09000 * 109.58653 * 293.82429 * 15 6 5 42 42 H 1.09001 * 109.50121 * 65.31657 * 16 15 6 43 43 H 1.09000 * 109.49671 * 185.38228 * 16 15 6 44 44 H 0.96992 * 120.00461 * 95.00459 * 19 17 16 45 45 H 0.96996 * 120.00569 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8411 5 6 1.6385 2.1268 1.3104 6 7 2.2450 3.4644 1.3506 7 6 1.4864 4.5560 1.5731 8 8 0.2752 4.4552 1.6216 9 6 2.1236 5.8700 1.7573 10 6 3.3325 6.0397 2.3571 11 16 3.7634 7.6883 2.3953 12 6 2.2788 8.1725 1.5944 13 6 1.9092 9.5943 1.2585 14 6 1.5265 7.1121 1.3254 15 6 3.6952 3.5889 1.1498 16 6 4.0736 2.8883 -0.1589 17 6 3.5652 1.4452 -0.1258 18 1 3.8544 0.9370 -1.0458 19 7 4.1507 0.7477 1.0218 20 6 5.3880 0.1708 0.9140 21 1 5.9323 0.2304 -0.0170 22 6 5.9425 -0.4906 2.0011 23 7 5.2794 -0.5628 3.1357 24 14 7.6306 -1.2769 1.8542 25 1 8.6715 -0.2903 2.2395 26 1 7.7079 -2.4551 2.7548 27 1 7.8543 -1.7104 0.4517 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9965 1.5378 2.1548 34 1 0.5532 2.2161 1.3585 35 1 3.9381 5.2382 2.7535 36 1 1.3585 10.0329 2.0908 37 1 2.8154 10.1723 1.0777 38 1 1.2862 9.6062 0.3643 39 1 0.5668 7.1721 0.8337 40 1 3.9669 4.6429 1.0918 41 1 4.2209 3.1191 1.9810 42 1 3.6191 3.4149 -0.9982 43 1 5.1576 2.8901 -0.2723 44 1 3.6620 0.6944 1.8579 45 1 5.6670 -1.0246 3.8956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037946659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:34 Heat of formation + Delta-G solvation = -12.788764 kcal Electronic energy + Delta-G solvation = -25822.299040 eV Core-core repulsion = 22351.695666 eV Total energy + Delta-G solvation = -3470.603374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60363 -39.46314 -38.02097 -35.97280 -35.38124 -33.45300 -33.01882 -31.04540 -30.00614 -27.67807 -27.20400 -25.60199 -25.05298 -24.50500 -22.18261 -21.34743 -20.40242 -19.78909 -19.27511 -18.22340 -17.75805 -17.04490 -16.57335 -16.17387 -16.11366 -15.65560 -15.38244 -14.89743 -14.81101 -14.73636 -14.53609 -14.30081 -14.18884 -14.07561 -13.58070 -13.32234 -13.17939 -13.03167 -12.92198 -12.85297 -12.74629 -12.65731 -12.34300 -12.15193 -12.05644 -11.89673 -11.83237 -11.58872 -11.46435 -11.14660 -10.98090 -10.78209 -9.71967 -9.69386 -9.31635 -8.91791 -7.88158 -5.14577 -0.22501 0.56083 0.89428 1.02353 1.49675 1.50623 1.58195 1.90162 2.18445 2.60012 3.45328 3.52924 3.79173 3.81041 3.86022 4.02214 4.06499 4.16155 4.27187 4.33293 4.36577 4.42590 4.45202 4.52153 4.57364 4.66614 4.79442 4.80658 4.86389 4.90870 4.98667 5.00734 5.03902 5.14523 5.17348 5.20888 5.24085 5.27904 5.38060 5.40634 5.50662 5.60142 5.64535 6.33223 6.37875 7.05410 7.41059 8.16395 8.40880 9.34975 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.004005 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.888861 B = 6990.175215 C = 8554.260458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.082 0.918 5 C 0.125 3.875 6 N -0.594 5.594 7 C 0.572 3.428 8 O -0.583 6.583 9 C -0.166 4.166 10 C -0.225 4.225 11 S 0.235 5.765 12 C -0.196 4.196 13 C -0.082 4.082 14 C -0.116 4.116 15 C 0.110 3.890 16 C -0.142 4.142 17 C 0.173 3.827 18 H 0.048 0.952 19 N -0.723 5.723 20 C -0.227 4.227 21 H 0.075 0.925 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.963 3.037 25 H -0.290 1.290 26 H -0.303 1.303 27 H -0.272 1.272 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.174 0.826 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 18.652 -5.808 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.100 0.900 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.360 3.640 8 O -0.465 6.465 9 C -0.184 4.184 10 C -0.363 4.363 11 S 0.502 5.498 12 C -0.313 4.313 13 C -0.141 4.141 14 C -0.144 4.144 15 C -0.012 4.012 16 C -0.183 4.183 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.365 5.365 20 C -0.359 4.359 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.793 3.207 25 H -0.217 1.217 26 H -0.230 1.230 27 H -0.197 1.197 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.192 0.808 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.453 19.302 -5.329 20.514 hybrid contribution -0.348 -2.113 0.203 2.152 sum -4.800 17.189 -5.126 18.568 Atomic orbital electron populations 1.21787 0.94773 1.01965 1.01826 1.21337 0.96053 0.95014 1.01861 1.21654 0.95922 0.96538 0.97024 0.89963 1.21558 0.98657 0.81594 0.97921 1.48012 1.09045 1.06193 1.69157 1.18132 0.85937 0.84126 0.75765 1.90713 1.15077 1.86628 1.54097 1.20137 0.96453 0.93907 1.07918 1.26016 0.99940 1.04741 1.05630 1.82803 1.17883 0.94464 1.54684 1.24790 0.98948 1.01051 1.06495 1.20481 1.03134 0.87236 1.03203 1.20978 1.01255 0.89082 1.03108 1.22067 0.78552 1.01956 0.98615 1.22410 1.01510 0.97836 0.96544 1.20430 0.90952 0.91327 0.90854 0.93358 1.42571 1.18350 1.64216 1.11318 1.19564 0.94287 1.25208 0.96797 0.90699 1.25363 1.01737 1.03155 0.96079 1.69803 1.39539 1.49786 1.02828 0.85290 0.80874 0.77420 0.77072 1.21711 1.23030 1.19732 0.91887 0.92020 0.93300 0.91808 0.93587 0.93045 0.89647 0.80843 0.89496 0.89551 0.89581 0.83552 0.87724 0.92452 0.91111 0.91167 0.79316 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.67 71.98 0.70 -3.24 16 2 C -0.10 -3.38 5.19 30.60 0.16 -3.23 16 3 C -0.09 -3.02 2.14 -10.71 -0.02 -3.04 16 4 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 5 C 0.13 4.44 5.04 86.36 0.44 4.88 16 6 N -0.59 -20.21 2.97 -823.06 -2.45 -22.66 16 7 C 0.57 19.97 7.50 86.59 0.65 20.62 16 8 O -0.58 -23.71 16.41 -4.14 -0.07 -23.78 16 9 C -0.17 -4.72 5.38 -19.87 -0.11 -4.83 16 10 C -0.23 -5.46 8.35 67.30 0.56 -4.90 16 11 S 0.23 4.11 23.00 -56.49 -1.30 2.81 16 12 C -0.20 -3.55 6.44 24.51 0.16 -3.39 16 13 C -0.08 -0.89 10.34 71.24 0.74 -0.15 16 14 C -0.12 -2.79 10.11 22.67 0.23 -2.56 16 15 C 0.11 3.54 4.72 86.36 0.41 3.95 16 16 C -0.14 -4.61 5.78 30.67 0.18 -4.43 16 17 C 0.17 6.39 2.53 45.02 0.11 6.50 16 18 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 19 N -0.72 -33.48 3.72 -322.81 -1.20 -34.68 16 20 C -0.23 -11.74 9.93 84.03 0.83 -10.90 16 21 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 23 N -0.97 -57.29 13.06 21.65 0.28 -57.01 16 24 Si 0.96 44.87 29.55 68.60 2.03 46.90 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.36 6.70 -2.39 -0.02 1.34 16 31 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.77 7.70 -2.39 -0.02 1.76 16 33 H 0.05 2.07 6.64 -2.39 -0.02 2.05 16 34 H 0.09 3.06 5.72 -2.38 -0.01 3.05 16 35 H 0.17 4.29 6.42 -2.91 -0.02 4.27 16 36 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 40 H 0.10 2.87 4.47 -2.39 -0.01 2.86 16 41 H 0.06 2.17 7.73 -2.39 -0.02 2.15 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.37 18.95 5.94 -92.71 -0.55 18.40 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.10 365.53 3.24 -61.86 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.45 Total: 34.71 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.50 Total: -8.15 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -3.36 Total: -114.34 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.07 Total: -23.78 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.30 Total: 2.81 kcal Total: -65.10 3.24 -61.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037946659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.073 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds