Wall clock time and date at job start Tue Mar 31 2020 13:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46796 * 2 1 4 4 H 1.09003 * 109.49644 * 55.06615 * 3 2 1 5 5 C 1.53193 * 109.49726 * 295.00202 * 3 2 1 6 6 N 1.46924 * 108.77111 * 185.38204 * 5 3 2 7 7 C 1.34776 * 120.62823 * 233.58494 * 6 5 3 8 8 O 1.21635 * 120.00251 * 6.07123 * 7 6 5 9 9 C 1.47202 * 120.00060 * 186.07274 * 7 6 5 10 10 C 1.35999 * 123.45984 * 215.02530 * 9 7 6 11 11 S 1.70447 * 110.81676 * 180.26500 * 10 9 7 12 12 C 1.75509 * 92.44430 * 359.65655 * 11 10 9 13 13 C 1.50696 * 124.71430 * 180.09176 * 12 11 10 14 14 C 1.32777 * 110.57495 * 0.34823 * 12 11 10 15 15 C 1.46930 * 118.74217 * 53.86127 * 6 5 3 16 16 C 1.53624 * 108.54118 * 306.09457 * 15 6 5 17 17 C 1.53037 * 109.52253 * 175.14871 * 3 2 1 18 18 H 1.08995 * 109.46408 * 61.31224 * 17 3 2 19 19 N 1.46509 * 109.46060 * 301.34003 * 17 3 2 20 20 C 1.36930 * 120.00221 * 155.00277 * 19 17 3 21 21 H 1.08002 * 119.99849 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00293 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00294 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99801 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47487 * 90.00051 * 24 22 20 26 26 H 1.48496 * 109.47454 * 210.00087 * 24 22 20 27 27 H 1.48501 * 109.47171 * 330.00282 * 24 22 20 28 28 H 1.09000 * 109.47214 * 299.99679 * 1 2 3 29 29 H 1.09001 * 109.47192 * 60.00242 * 1 2 3 30 30 H 1.09002 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47214 * 240.00321 * 2 1 3 32 32 H 1.08994 * 109.47400 * 120.00111 * 2 1 3 33 33 H 1.08997 * 109.58832 * 65.59789 * 5 3 2 34 34 H 1.08996 * 109.58734 * 305.16517 * 5 3 2 35 35 H 1.07998 * 124.59452 * 0.02562 * 10 9 7 36 36 H 1.09004 * 109.47421 * 270.29056 * 13 12 11 37 37 H 1.09002 * 109.47102 * 30.29219 * 13 12 11 38 38 H 1.09003 * 109.47437 * 150.29257 * 13 12 11 39 39 H 1.07995 * 123.45971 * 179.71979 * 14 12 11 40 40 H 1.09005 * 109.58602 * 65.92512 * 15 6 5 41 41 H 1.08997 * 109.58393 * 186.34995 * 15 6 5 42 42 H 1.09004 * 109.63330 * 294.86129 * 16 15 6 43 43 H 1.08996 * 109.43225 * 174.72652 * 16 15 6 44 44 H 0.96999 * 119.99509 * 335.00376 * 19 17 3 45 45 H 0.97008 * 119.99980 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6349 2.1280 -1.3088 6 7 2.2407 3.4660 -1.3489 7 6 1.4803 4.5579 -1.5633 8 8 0.2694 4.4551 -1.6156 9 6 2.1151 5.8749 -1.7341 10 6 1.5655 7.0359 -1.2872 11 16 2.5663 8.3636 -1.6621 12 6 3.7648 7.3388 -2.4325 13 6 5.0437 7.8341 -3.0571 14 6 3.3856 6.0669 -2.3936 15 6 3.6921 3.5905 -1.1570 16 6 4.0732 2.8890 0.1555 17 6 3.5654 1.4457 0.1220 18 1 3.9993 0.9280 -0.7334 19 7 3.9578 0.7618 1.3568 20 6 5.1964 0.1867 1.4571 21 1 5.8840 0.2368 0.6257 22 6 5.5679 -0.4618 2.6268 23 7 6.7583 -1.0150 2.7230 24 14 4.3785 -0.5492 4.0644 25 1 3.5457 -1.7729 3.9443 26 1 5.1424 -0.5933 5.3371 27 1 3.5015 0.6492 4.0549 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5495 2.2169 -1.3540 34 1 1.9911 1.5402 -2.1546 35 1 0.6208 7.1073 -0.7686 36 1 4.8679 8.0704 -4.1066 37 1 5.3802 8.7296 -2.5345 38 1 5.8082 7.0607 -2.9819 39 1 3.9672 5.2590 -2.8123 40 1 4.2126 3.1193 -1.9908 41 1 3.9643 4.6445 -1.1022 42 1 3.6206 3.4145 0.9965 43 1 5.1576 2.8908 0.2660 44 1 3.3401 0.7165 2.1033 45 1 7.0178 -1.4685 3.5404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037946668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:55 Heat of formation + Delta-G solvation = 3.786221 kcal Electronic energy + Delta-G solvation = -25578.885099 eV Core-core repulsion = 22109.000471 eV Total energy + Delta-G solvation = -3469.884629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43050 -38.19060 -37.14897 -34.81021 -33.88162 -32.26314 -31.77674 -29.88929 -29.11425 -26.99551 -25.96526 -24.22183 -23.56021 -22.41104 -20.85363 -20.32063 -19.79398 -18.94432 -17.87649 -17.48822 -16.21830 -16.14701 -15.31102 -14.97344 -14.62579 -14.28958 -14.15059 -13.86726 -13.70887 -13.49590 -13.37343 -13.24763 -12.99700 -12.72887 -12.58209 -12.44136 -12.22075 -12.21228 -11.82977 -11.78981 -11.41814 -11.15879 -11.03365 -10.93491 -10.78233 -10.46667 -10.31818 -10.21440 -9.85935 -9.73623 -9.59602 -9.03268 -8.91810 -8.66025 -8.44849 -7.28664 -5.79966 -3.15126 0.65438 1.28601 1.66436 1.85643 3.00607 3.22930 3.35507 3.39020 3.43860 4.37771 4.56713 4.66959 4.85490 4.96948 5.02643 5.07404 5.18054 5.21391 5.22626 5.24290 5.38002 5.48180 5.51621 5.55599 5.60525 5.61712 5.71478 5.78218 5.82553 5.92956 6.00859 6.04298 6.07975 6.10618 6.24991 6.29173 6.34037 6.47124 6.56515 6.70345 6.80218 6.94691 7.45826 7.95777 8.18046 8.39286 9.17655 9.90604 10.10734 11.38372 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003594 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.898016 B = 7788.917866 C = 8917.226172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.578 3.422 8 O -0.546 6.546 9 C -0.147 4.147 10 C -0.191 4.191 11 S 0.174 5.826 12 C -0.199 4.199 13 C -0.083 4.083 14 C -0.116 4.116 15 C 0.096 3.904 16 C -0.151 4.151 17 C 0.188 3.812 18 H 0.057 0.943 19 N -0.745 5.745 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.934 5.934 24 Si 0.881 3.119 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.171 0.829 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 17.090 -11.951 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.330 5.330 7 C 0.365 3.635 8 O -0.426 6.426 9 C -0.165 4.165 10 C -0.329 4.329 11 S 0.440 5.560 12 C -0.315 4.315 13 C -0.141 4.141 14 C -0.144 4.144 15 C -0.027 4.027 16 C -0.192 4.192 17 C 0.079 3.921 18 H 0.075 0.925 19 N -0.387 5.387 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.189 0.811 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.172 0.828 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.379 18.467 -11.757 23.440 hybrid contribution -0.635 -1.731 1.088 2.141 sum -9.014 16.735 -10.669 21.798 Atomic orbital electron populations 1.21857 0.96619 1.01169 1.01487 1.21458 0.94554 0.95666 1.03406 1.21830 0.97615 0.96265 0.97132 0.91264 1.21751 0.99559 0.81251 0.97670 1.48010 1.08620 1.06447 1.69939 1.17670 0.86155 0.83251 0.76391 1.90769 1.13668 1.86011 1.52111 1.20181 0.96566 0.93994 1.05734 1.25428 1.05215 0.96394 1.05852 1.82988 1.10879 1.08815 1.53325 1.24375 1.02493 0.96707 1.07951 1.20358 0.91797 1.01846 1.00133 1.21306 0.95072 0.96684 1.01386 1.22353 0.79206 1.02089 0.99010 1.22721 1.02524 0.98658 0.95259 1.20168 0.90665 0.90663 0.90650 0.92494 1.42783 1.16587 1.66299 1.13009 1.19047 0.90642 1.27004 1.00460 0.89198 1.24638 0.96397 1.00269 0.97625 1.69695 1.19253 1.41554 1.27652 0.86612 0.80980 0.77840 0.83468 1.21041 1.21803 1.20384 0.93074 0.92918 0.93029 0.91886 0.90513 0.88989 0.91331 0.81132 0.90672 0.91167 0.90160 0.82834 0.91286 0.89118 0.92316 0.90104 0.80626 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.11 -1.69 1.92 -90.50 -0.17 -1.87 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.70 5.33 -3.71 -0.02 1.68 16 6 N -0.60 -8.44 2.97 -173.85 -0.52 -8.95 16 7 C 0.58 8.76 7.49 -12.62 -0.09 8.67 16 8 O -0.55 -9.86 16.38 5.25 0.09 -9.78 16 9 C -0.15 -1.86 5.29 -104.63 -0.55 -2.41 16 10 C -0.19 -2.15 10.68 29.93 0.32 -1.83 16 11 S 0.17 1.50 23.00 -107.50 -2.47 -0.97 16 12 C -0.20 -1.77 6.44 -36.18 -0.23 -2.00 16 13 C -0.08 -0.51 10.34 36.00 0.37 -0.14 16 14 C -0.12 -1.20 7.73 -39.02 -0.30 -1.50 16 15 C 0.10 1.24 5.06 -3.48 -0.02 1.22 16 16 C -0.15 -2.44 5.67 -26.39 -0.15 -2.59 16 17 C 0.19 3.39 2.19 -67.89 -0.15 3.24 16 18 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 19 N -0.74 -16.72 4.14 -53.39 -0.22 -16.94 16 20 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 24 Si 0.88 21.82 27.73 -169.99 -4.71 17.10 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.34 7.22 -51.93 -0.38 0.97 16 33 H 0.09 1.36 5.71 -51.93 -0.30 1.06 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.15 1.40 6.61 -52.49 -0.35 1.05 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.06 4.44 -51.93 -0.23 0.83 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.36 8.18 5.37 -40.82 -0.22 7.96 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -32.10 366.10 -9.48 -41.58 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.90 Total: 7.97 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.04 Total: -7.59 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.04 Total: -53.83 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.47 Total: -0.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.10 -9.48 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037946668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.364 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds