Wall clock time and date at job start Tue Mar 31 2020 13:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46796 * 2 1 4 4 H 1.09003 * 109.49644 * 55.06615 * 3 2 1 5 5 C 1.53193 * 109.49726 * 295.00202 * 3 2 1 6 6 N 1.46924 * 108.77111 * 185.38204 * 5 3 2 7 7 C 1.34776 * 120.62823 * 233.58494 * 6 5 3 8 8 O 1.21635 * 120.00251 * 6.07123 * 7 6 5 9 9 C 1.47202 * 120.00060 * 186.07274 * 7 6 5 10 10 C 1.35999 * 123.45984 * 215.02530 * 9 7 6 11 11 S 1.70447 * 110.81676 * 180.26500 * 10 9 7 12 12 C 1.75509 * 92.44430 * 359.65655 * 11 10 9 13 13 C 1.50696 * 124.71430 * 180.09176 * 12 11 10 14 14 C 1.32777 * 110.57495 * 0.34823 * 12 11 10 15 15 C 1.46930 * 118.74217 * 53.86127 * 6 5 3 16 16 C 1.53624 * 108.54118 * 306.09457 * 15 6 5 17 17 C 1.53037 * 109.52253 * 175.14871 * 3 2 1 18 18 H 1.08995 * 109.46408 * 61.31224 * 17 3 2 19 19 N 1.46509 * 109.46060 * 301.34003 * 17 3 2 20 20 C 1.36930 * 120.00221 * 155.00277 * 19 17 3 21 21 H 1.08002 * 119.99849 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00293 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00294 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99801 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47487 * 90.00051 * 24 22 20 26 26 H 1.48496 * 109.47454 * 210.00087 * 24 22 20 27 27 H 1.48501 * 109.47171 * 330.00282 * 24 22 20 28 28 H 1.09000 * 109.47214 * 299.99679 * 1 2 3 29 29 H 1.09001 * 109.47192 * 60.00242 * 1 2 3 30 30 H 1.09002 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47214 * 240.00321 * 2 1 3 32 32 H 1.08994 * 109.47400 * 120.00111 * 2 1 3 33 33 H 1.08997 * 109.58832 * 65.59789 * 5 3 2 34 34 H 1.08996 * 109.58734 * 305.16517 * 5 3 2 35 35 H 1.07998 * 124.59452 * 0.02562 * 10 9 7 36 36 H 1.09004 * 109.47421 * 270.29056 * 13 12 11 37 37 H 1.09002 * 109.47102 * 30.29219 * 13 12 11 38 38 H 1.09003 * 109.47437 * 150.29257 * 13 12 11 39 39 H 1.07995 * 123.45971 * 179.71979 * 14 12 11 40 40 H 1.09005 * 109.58602 * 65.92512 * 15 6 5 41 41 H 1.08997 * 109.58393 * 186.34995 * 15 6 5 42 42 H 1.09004 * 109.63330 * 294.86129 * 16 15 6 43 43 H 1.08996 * 109.43225 * 174.72652 * 16 15 6 44 44 H 0.96999 * 119.99509 * 335.00376 * 19 17 3 45 45 H 0.97008 * 119.99980 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6349 2.1280 -1.3088 6 7 2.2407 3.4660 -1.3489 7 6 1.4803 4.5579 -1.5633 8 8 0.2694 4.4551 -1.6156 9 6 2.1151 5.8749 -1.7341 10 6 1.5655 7.0359 -1.2872 11 16 2.5663 8.3636 -1.6621 12 6 3.7648 7.3388 -2.4325 13 6 5.0437 7.8341 -3.0571 14 6 3.3856 6.0669 -2.3936 15 6 3.6921 3.5905 -1.1570 16 6 4.0732 2.8890 0.1555 17 6 3.5654 1.4457 0.1220 18 1 3.9993 0.9280 -0.7334 19 7 3.9578 0.7618 1.3568 20 6 5.1964 0.1867 1.4571 21 1 5.8840 0.2368 0.6257 22 6 5.5679 -0.4618 2.6268 23 7 6.7583 -1.0150 2.7230 24 14 4.3785 -0.5492 4.0644 25 1 3.5457 -1.7729 3.9443 26 1 5.1424 -0.5933 5.3371 27 1 3.5015 0.6492 4.0549 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5495 2.2169 -1.3540 34 1 1.9911 1.5402 -2.1546 35 1 0.6208 7.1073 -0.7686 36 1 4.8679 8.0704 -4.1066 37 1 5.3802 8.7296 -2.5345 38 1 5.8082 7.0607 -2.9819 39 1 3.9672 5.2590 -2.8123 40 1 4.2126 3.1193 -1.9908 41 1 3.9643 4.6445 -1.1022 42 1 3.6206 3.4145 0.9965 43 1 5.1576 2.8908 0.2660 44 1 3.3401 0.7165 2.1033 45 1 7.0178 -1.4685 3.5404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037946668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:54 Heat of formation + Delta-G solvation = -14.967586 kcal Electronic energy + Delta-G solvation = -25579.698325 eV Core-core repulsion = 22109.000471 eV Total energy + Delta-G solvation = -3470.697855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57014 -39.42421 -38.10333 -36.29554 -35.32323 -33.62081 -32.95048 -31.50667 -30.31346 -27.66383 -27.28767 -25.57436 -24.78033 -23.85528 -22.23929 -21.43646 -20.88442 -20.09826 -19.43729 -18.68109 -17.30745 -17.18814 -16.82092 -16.25574 -15.99718 -15.73033 -15.20118 -14.93003 -14.75719 -14.72940 -14.57759 -14.38916 -14.23815 -14.00581 -13.92914 -13.35407 -13.25142 -13.16539 -12.98839 -12.86899 -12.83039 -12.60362 -12.57598 -12.15881 -12.12925 -11.84935 -11.77961 -11.63152 -11.57447 -11.14153 -11.06081 -10.86390 -9.81982 -9.67430 -9.35737 -9.22030 -8.00031 -5.31527 -0.16913 0.56582 0.88644 1.00818 1.37599 1.38370 1.45454 1.91576 2.17243 2.48756 3.31510 3.46296 3.57358 3.71870 3.81685 3.96498 4.01406 4.14879 4.25940 4.28016 4.37352 4.42450 4.44278 4.53629 4.60028 4.66664 4.75876 4.78206 4.82037 4.86802 4.90226 4.98677 5.01224 5.03775 5.14358 5.20350 5.24778 5.31898 5.39652 5.43947 5.47881 5.61711 5.80583 6.24292 6.32896 7.04198 7.10056 7.86965 8.05387 9.21543 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003594 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.898016 B = 7788.917866 C = 8917.226172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.097 4.097 4 H 0.057 0.943 5 C 0.124 3.876 6 N -0.598 5.598 7 C 0.576 3.424 8 O -0.583 6.583 9 C -0.171 4.171 10 C -0.209 4.209 11 S 0.226 5.774 12 C -0.195 4.195 13 C -0.085 4.085 14 C -0.130 4.130 15 C 0.106 3.894 16 C -0.143 4.143 17 C 0.183 3.817 18 H 0.053 0.947 19 N -0.747 5.747 20 C -0.217 4.217 21 H 0.064 0.936 22 C -0.059 4.059 23 N -0.983 5.983 24 Si 0.943 3.057 25 H -0.280 1.280 26 H -0.299 1.299 27 H -0.260 1.260 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.165 0.835 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.361 0.639 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 19.033 -13.047 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.117 4.117 4 H 0.076 0.924 5 C 0.002 3.998 6 N -0.329 5.329 7 C 0.364 3.636 8 O -0.465 6.465 9 C -0.189 4.189 10 C -0.347 4.347 11 S 0.492 5.508 12 C -0.312 4.312 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.016 4.016 16 C -0.184 4.184 17 C 0.075 3.925 18 H 0.071 0.929 19 N -0.389 5.389 20 C -0.348 4.348 21 H 0.082 0.918 22 C -0.251 4.251 23 N -0.634 5.634 24 Si 0.772 3.228 25 H -0.206 1.206 26 H -0.226 1.226 27 H -0.185 1.185 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.185 0.815 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.182 0.818 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.194 0.806 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.152 20.451 -12.888 25.848 hybrid contribution -0.386 -2.219 1.325 2.613 sum -9.537 18.232 -11.563 23.602 Atomic orbital electron populations 1.21799 0.94755 1.02084 1.01860 1.21419 0.96192 0.94904 1.02418 1.21687 0.95446 0.96819 0.97712 0.92439 1.21702 0.99504 0.81493 0.97139 1.48055 1.08979 1.06301 1.69539 1.18084 0.85782 0.84186 0.75514 1.90738 1.15243 1.86634 1.53917 1.20155 0.97993 0.92965 1.07785 1.25636 1.05753 0.97475 1.05838 1.82826 1.09391 1.06864 1.51703 1.24801 1.03227 0.96418 1.06801 1.20496 0.90524 1.02528 1.00789 1.21341 0.94500 0.97764 1.02218 1.22362 0.78655 1.03028 0.97596 1.22539 1.01400 0.97431 0.96987 1.20399 0.92462 0.91154 0.88512 0.92889 1.42804 1.15023 1.66528 1.14588 1.19017 0.91447 1.25247 0.99125 0.91810 1.25324 0.98049 1.01132 1.00552 1.69857 1.21529 1.43692 1.28339 0.85582 0.78989 0.78501 0.79721 1.20621 1.22594 1.18486 0.93371 0.91866 0.91872 0.91318 0.93009 0.89296 0.89644 0.81456 0.89358 0.89989 0.89381 0.81802 0.89236 0.87302 0.93415 0.91448 0.80595 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.67 71.98 0.70 -2.92 16 2 C -0.11 -3.26 5.31 30.60 0.16 -3.10 16 3 C -0.10 -2.93 1.92 -10.72 -0.02 -2.95 16 4 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 5 C 0.12 3.34 5.33 86.36 0.46 3.80 16 6 N -0.60 -16.06 2.97 -822.19 -2.44 -18.50 16 7 C 0.58 16.97 7.49 86.60 0.65 17.61 16 8 O -0.58 -20.95 16.38 -4.14 -0.07 -21.02 16 9 C -0.17 -4.10 5.29 -19.87 -0.11 -4.20 16 10 C -0.21 -4.44 10.68 67.30 0.72 -3.72 16 11 S 0.23 3.33 23.00 -56.49 -1.30 2.03 16 12 C -0.20 -2.91 6.44 24.51 0.16 -2.75 16 13 C -0.08 -0.76 10.34 71.23 0.74 -0.02 16 14 C -0.13 -2.40 7.73 22.67 0.18 -2.22 16 15 C 0.11 2.54 5.06 86.51 0.44 2.98 16 16 C -0.14 -4.52 5.67 30.82 0.17 -4.35 16 17 C 0.18 6.48 2.19 45.01 0.10 6.58 16 18 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 19 N -0.75 -33.43 4.14 -322.82 -1.34 -34.77 16 20 C -0.22 -11.85 10.41 84.03 0.87 -10.98 16 21 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 22 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 23 N -0.98 -61.98 13.97 21.65 0.30 -61.68 16 24 Si 0.94 45.51 27.73 68.60 1.90 47.42 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 27 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.42 6.70 -2.39 -0.02 1.40 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16 33 H 0.09 2.52 5.71 -2.39 -0.01 2.50 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.16 2.55 6.61 -2.91 -0.02 2.53 16 40 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.11 2.30 4.44 -2.39 -0.01 2.29 16 42 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.36 16.13 5.37 -92.71 -0.50 15.63 16 45 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -70.49 366.10 3.18 -67.30 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.44 Total: 28.41 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.68 Total: -9.19 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.47 Total: -114.95 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.07 Total: -21.02 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.30 Total: 2.03 kcal Total: -70.49 3.18 -67.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037946668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.334 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds