Wall clock time and date at job start Tue Mar 31 2020 14:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.69929 * 2 1 4 4 C 1.52757 * 109.43397 * 120.16737 * 2 1 3 5 5 C 1.53040 * 109.38619 * 65.42646 * 4 2 1 6 6 H 1.09004 * 109.44524 * 301.22362 * 5 4 2 7 7 N 1.46493 * 109.46301 * 181.25939 * 5 4 2 8 8 C 1.36940 * 120.00326 * 154.92823 * 7 5 4 9 9 H 1.08006 * 119.99512 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00337 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46966 * 90.00577 * 12 10 8 14 14 H 1.48502 * 109.47048 * 210.00162 * 12 10 8 15 15 H 1.48493 * 109.47159 * 329.99941 * 12 10 8 16 16 C 1.53040 * 109.53706 * 61.23445 * 5 4 2 17 17 C 1.53191 * 109.31554 * 298.63695 * 16 5 4 18 18 N 1.46923 * 108.77411 * 54.63524 * 17 16 5 19 19 C 1.34783 * 120.63027 * 126.36451 * 18 17 16 20 20 O 1.21283 * 120.00043 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99786 * 0.02562 * 19 18 17 22 22 C 1.53003 * 109.47031 * 179.97438 * 21 19 18 23 23 C 1.50698 * 109.47034 * 179.97438 * 22 21 19 24 24 C 1.38424 * 122.53757 * 89.99821 * 23 22 21 25 25 C 1.33394 * 114.92041 * 179.97438 * 24 23 22 26 26 S 1.75887 * 109.59233 * 0.02562 * 25 24 23 27 27 C 1.33385 * 122.54139 * 269.97227 * 23 22 21 28 28 H 1.09002 * 109.47110 * 180.35898 * 1 2 3 29 29 H 1.09001 * 109.46728 * 300.34746 * 1 2 3 30 30 H 1.08991 * 109.47649 * 60.35147 * 1 2 3 31 31 H 1.08992 * 109.56510 * 305.38539 * 4 2 1 32 32 H 1.09006 * 109.38352 * 185.34703 * 4 2 1 33 33 H 0.97000 * 119.99613 * 334.93049 * 7 5 4 34 34 H 0.96997 * 120.00466 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.49560 * 178.68743 * 16 5 4 36 36 H 1.08992 * 109.49768 * 58.59320 * 16 5 4 37 37 H 1.09000 * 109.59017 * 294.85229 * 17 16 5 38 38 H 1.09005 * 109.58906 * 174.42284 * 17 16 5 39 39 H 1.08997 * 109.47302 * 59.99362 * 21 19 18 40 40 H 1.09004 * 109.46820 * 299.99494 * 21 19 18 41 41 H 1.08997 * 109.47506 * 59.99600 * 22 21 19 42 42 H 1.09004 * 109.47000 * 299.99499 * 22 21 19 43 43 H 1.08001 * 122.54383 * 0.02562 * 24 23 22 44 44 H 1.07995 * 125.20296 * 179.73420 * 25 24 23 45 45 H 1.08001 * 125.20152 * 0.06333 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0382 -0.7239 1.2454 5 6 1.6411 -2.2001 1.1725 6 1 0.5565 -2.2809 1.0994 7 7 2.1016 -2.8896 2.3802 8 6 1.4661 -4.0261 2.8042 9 1 0.6251 -4.4139 2.2484 10 6 1.9027 -4.6798 3.9483 11 7 2.9273 -4.2070 4.6259 12 14 1.0353 -6.2297 4.5270 13 1 1.6753 -7.4166 3.9050 14 1 1.1361 -6.3308 6.0051 15 1 -0.3947 -6.1738 4.1310 16 6 2.2844 -2.8430 -0.0583 17 6 1.7740 -2.1420 -1.3212 18 7 2.0224 -0.6995 -1.1946 19 6 2.6943 -0.0316 -2.1533 20 8 2.8926 1.1593 -2.0372 21 6 3.1982 -0.7644 -3.3699 22 6 3.9200 0.2181 -4.2944 23 6 4.4244 -0.5148 -5.5107 24 6 3.6684 -0.6559 -6.6616 25 6 4.2635 -1.3320 -7.6456 26 16 5.8677 -1.8354 -7.1292 27 6 5.6334 -1.0762 -5.5600 28 1 -0.3633 -1.0277 0.0064 29 1 -0.3633 0.5192 0.8869 30 1 -0.3634 0.5083 -0.8930 31 1 1.5989 -0.2724 2.1348 32 1 3.1241 -0.6413 1.2940 33 1 2.8566 -2.5411 2.8796 34 1 3.2322 -4.6635 5.4255 35 1 2.0201 -3.8998 -0.0968 36 1 3.3678 -2.7404 0.0020 37 1 0.7043 -2.3202 -1.4311 38 1 2.3024 -2.5287 -2.1927 39 1 2.3566 -1.2102 -3.9000 40 1 3.8897 -1.5484 -3.0613 41 1 4.7616 0.6643 -3.7645 42 1 3.2282 1.0019 -4.6030 43 1 2.6726 -0.2488 -6.7561 44 1 3.8253 -1.5424 -8.6100 45 1 6.3573 -1.0670 -4.7586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044629644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:11 Heat of formation + Delta-G solvation = -1.927551 kcal Electronic energy + Delta-G solvation = -24817.047857 eV Core-core repulsion = 21346.915461 eV Total energy + Delta-G solvation = -3470.132396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31579 -38.65963 -37.55440 -34.53993 -33.35904 -32.13221 -31.78905 -29.51979 -29.12937 -27.28468 -25.69579 -24.15580 -23.00062 -22.88878 -21.52541 -20.16832 -18.94947 -18.25550 -17.90077 -17.13301 -16.95913 -15.84509 -15.58566 -15.29814 -14.88462 -14.07094 -14.00242 -13.85523 -13.67417 -13.46832 -13.31224 -13.18979 -12.93695 -12.82273 -12.66627 -12.34809 -12.16093 -11.93826 -11.78344 -11.60294 -11.27502 -11.18335 -10.95993 -10.93584 -10.87192 -10.75824 -10.45602 -10.22202 -9.78798 -9.64130 -9.61632 -9.05584 -8.92534 -8.61828 -8.46965 -7.00009 -5.79891 -3.09145 0.75387 1.41659 1.73895 2.41792 2.71863 3.12457 3.40431 3.45669 3.47536 4.45453 4.55381 4.65737 4.88116 4.89359 4.96253 5.07306 5.17072 5.25209 5.27905 5.30481 5.33512 5.43878 5.48510 5.57565 5.59765 5.64416 5.76451 5.80442 5.82085 5.91146 5.93543 6.07125 6.18000 6.19826 6.28085 6.29613 6.38388 6.46346 6.53703 6.64889 6.89962 7.03461 7.56345 7.65709 8.27338 8.38410 9.49534 10.07369 10.41838 11.42669 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.002562 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.813518 B =10925.157331 C =12012.844762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.601 5.601 19 C 0.514 3.486 20 O -0.552 6.552 21 C -0.133 4.133 22 C -0.044 4.044 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.213 4.213 26 S 0.086 5.914 27 C -0.208 4.208 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 7.235 -23.174 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.334 5.334 19 C 0.303 3.697 20 O -0.430 6.430 21 C -0.173 4.173 22 C -0.084 4.084 23 C -0.112 4.112 24 C -0.159 4.159 25 C -0.349 4.349 26 S 0.349 5.651 27 C -0.343 4.343 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.158 0.842 44 H 0.180 0.820 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.220 6.880 -23.743 24.819 hybrid contribution -1.270 -0.303 1.183 1.762 sum 0.950 6.577 -22.560 23.518 Atomic orbital electron populations 1.22138 0.95138 1.02709 1.01812 1.21079 0.93978 0.97116 0.84073 0.88753 1.22136 1.01348 0.97290 0.96493 1.20188 0.96749 0.89151 0.87003 0.93133 1.42441 1.38201 1.29328 1.26472 1.19218 1.10349 1.01089 1.06372 0.91209 1.24749 0.98533 0.99474 0.98183 1.69661 1.27743 1.41272 1.19368 0.86213 0.78911 0.83361 0.77841 1.21741 1.21789 1.20767 1.22679 1.01215 1.00525 0.94866 1.21862 1.00930 0.79327 0.99643 1.48269 1.55145 1.09510 1.20458 1.20613 0.77530 0.87444 0.84127 1.90667 1.58019 1.15353 1.78988 1.21667 1.01812 0.99510 0.94341 1.20053 1.00748 0.96231 0.91402 1.18998 0.93995 1.01302 0.96920 1.20143 1.01554 1.01542 0.92696 1.25599 0.98462 1.06763 1.04030 1.84314 1.15730 1.55903 1.09105 1.25537 1.01558 1.06197 1.01038 0.91693 0.91416 0.92969 0.90593 0.91950 0.78301 0.93488 0.90692 0.92228 0.91488 0.90447 0.88901 0.88732 0.90173 0.90120 0.84186 0.81953 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.02 37.16 0.34 -1.69 16 2 C 0.14 2.02 3.19 -67.82 -0.22 1.80 16 3 H 0.09 1.44 7.01 -51.93 -0.36 1.08 16 4 C -0.13 -2.20 4.99 -26.84 -0.13 -2.33 16 5 C 0.18 3.34 2.53 -67.89 -0.17 3.16 16 6 H 0.05 0.96 6.43 -51.93 -0.33 0.62 16 7 N -0.72 -17.51 5.12 -53.39 -0.27 -17.78 16 8 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 12 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 17 C 0.11 1.31 5.93 -3.71 -0.02 1.29 16 18 N -0.60 -8.11 2.68 -165.47 -0.44 -8.55 16 19 C 0.51 6.98 7.70 -10.98 -0.08 6.90 16 20 O -0.55 -9.20 15.40 5.55 0.09 -9.12 16 21 C -0.13 -1.34 4.03 -27.88 -0.11 -1.45 16 22 C -0.04 -0.43 4.76 -27.88 -0.13 -0.57 16 23 C -0.10 -0.92 5.05 -106.25 -0.54 -1.45 16 24 C -0.13 -1.07 9.98 -41.21 -0.41 -1.48 16 25 C -0.21 -1.64 11.23 29.04 0.33 -1.31 16 26 S 0.09 0.69 23.34 -107.50 -2.51 -1.82 16 27 C -0.21 -1.84 10.98 29.04 0.32 -1.53 16 28 H 0.06 0.84 5.74 -51.93 -0.30 0.54 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 38 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.09 0.80 7.94 -51.93 -0.41 0.38 16 40 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 41 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.19 372.33 -10.08 -41.27 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.01 Total: 8.82 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.24 Total: -8.30 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.01 Total: -53.40 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.19 -10.08 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044629644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.345 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds