Wall clock time and date at job start Tue Mar 31 2020 14:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.69929 * 2 1 4 4 C 1.52757 * 109.43397 * 120.16737 * 2 1 3 5 5 C 1.53040 * 109.38619 * 65.42646 * 4 2 1 6 6 H 1.09004 * 109.44524 * 301.22362 * 5 4 2 7 7 N 1.46493 * 109.46301 * 181.25939 * 5 4 2 8 8 C 1.36940 * 120.00326 * 154.92823 * 7 5 4 9 9 H 1.08006 * 119.99512 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00337 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46966 * 90.00577 * 12 10 8 14 14 H 1.48502 * 109.47048 * 210.00162 * 12 10 8 15 15 H 1.48493 * 109.47159 * 329.99941 * 12 10 8 16 16 C 1.53040 * 109.53706 * 61.23445 * 5 4 2 17 17 C 1.53191 * 109.31554 * 298.63695 * 16 5 4 18 18 N 1.46923 * 108.77411 * 54.63524 * 17 16 5 19 19 C 1.34783 * 120.63027 * 126.36451 * 18 17 16 20 20 O 1.21283 * 120.00043 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99786 * 0.02562 * 19 18 17 22 22 C 1.53003 * 109.47031 * 179.97438 * 21 19 18 23 23 C 1.50698 * 109.47034 * 179.97438 * 22 21 19 24 24 C 1.38424 * 122.53757 * 89.99821 * 23 22 21 25 25 C 1.33394 * 114.92041 * 179.97438 * 24 23 22 26 26 S 1.75887 * 109.59233 * 0.02562 * 25 24 23 27 27 C 1.33385 * 122.54139 * 269.97227 * 23 22 21 28 28 H 1.09002 * 109.47110 * 180.35898 * 1 2 3 29 29 H 1.09001 * 109.46728 * 300.34746 * 1 2 3 30 30 H 1.08991 * 109.47649 * 60.35147 * 1 2 3 31 31 H 1.08992 * 109.56510 * 305.38539 * 4 2 1 32 32 H 1.09006 * 109.38352 * 185.34703 * 4 2 1 33 33 H 0.97000 * 119.99613 * 334.93049 * 7 5 4 34 34 H 0.96997 * 120.00466 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.49560 * 178.68743 * 16 5 4 36 36 H 1.08992 * 109.49768 * 58.59320 * 16 5 4 37 37 H 1.09000 * 109.59017 * 294.85229 * 17 16 5 38 38 H 1.09005 * 109.58906 * 174.42284 * 17 16 5 39 39 H 1.08997 * 109.47302 * 59.99362 * 21 19 18 40 40 H 1.09004 * 109.46820 * 299.99494 * 21 19 18 41 41 H 1.08997 * 109.47506 * 59.99600 * 22 21 19 42 42 H 1.09004 * 109.47000 * 299.99499 * 22 21 19 43 43 H 1.08001 * 122.54383 * 0.02562 * 24 23 22 44 44 H 1.07995 * 125.20296 * 179.73420 * 25 24 23 45 45 H 1.08001 * 125.20152 * 0.06333 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0382 -0.7239 1.2454 5 6 1.6411 -2.2001 1.1725 6 1 0.5565 -2.2809 1.0994 7 7 2.1016 -2.8896 2.3802 8 6 1.4661 -4.0261 2.8042 9 1 0.6251 -4.4139 2.2484 10 6 1.9027 -4.6798 3.9483 11 7 2.9273 -4.2070 4.6259 12 14 1.0353 -6.2297 4.5270 13 1 1.6753 -7.4166 3.9050 14 1 1.1361 -6.3308 6.0051 15 1 -0.3947 -6.1738 4.1310 16 6 2.2844 -2.8430 -0.0583 17 6 1.7740 -2.1420 -1.3212 18 7 2.0224 -0.6995 -1.1946 19 6 2.6943 -0.0316 -2.1533 20 8 2.8926 1.1593 -2.0372 21 6 3.1982 -0.7644 -3.3699 22 6 3.9200 0.2181 -4.2944 23 6 4.4244 -0.5148 -5.5107 24 6 3.6684 -0.6559 -6.6616 25 6 4.2635 -1.3320 -7.6456 26 16 5.8677 -1.8354 -7.1292 27 6 5.6334 -1.0762 -5.5600 28 1 -0.3633 -1.0277 0.0064 29 1 -0.3633 0.5192 0.8869 30 1 -0.3634 0.5083 -0.8930 31 1 1.5989 -0.2724 2.1348 32 1 3.1241 -0.6413 1.2940 33 1 2.8566 -2.5411 2.8796 34 1 3.2322 -4.6635 5.4255 35 1 2.0201 -3.8998 -0.0968 36 1 3.3678 -2.7404 0.0020 37 1 0.7043 -2.3202 -1.4311 38 1 2.3024 -2.5287 -2.1927 39 1 2.3566 -1.2102 -3.9000 40 1 3.8897 -1.5484 -3.0613 41 1 4.7616 0.6643 -3.7645 42 1 3.2282 1.0019 -4.6030 43 1 2.6726 -0.2488 -6.7561 44 1 3.8253 -1.5424 -8.6100 45 1 6.3573 -1.0670 -4.7586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044629644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:10 Heat of formation + Delta-G solvation = -19.203379 kcal Electronic energy + Delta-G solvation = -24817.796993 eV Core-core repulsion = 21346.915461 eV Total energy + Delta-G solvation = -3470.881533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43997 -39.45756 -38.71474 -36.21218 -34.35704 -33.65263 -32.99349 -31.02662 -29.96732 -28.58481 -26.55150 -25.84860 -24.36514 -23.69937 -22.80323 -21.35470 -19.63914 -19.59846 -18.87615 -18.58932 -18.03457 -16.94190 -16.69242 -16.56482 -16.03009 -15.65219 -15.31407 -14.99776 -14.95742 -14.69870 -14.45725 -14.15752 -13.88755 -13.83996 -13.71588 -13.19927 -13.16773 -13.00454 -12.86184 -12.83262 -12.76982 -12.61416 -12.39471 -12.15226 -12.05818 -11.94364 -11.92928 -11.68126 -11.59081 -11.09341 -10.91125 -10.71127 -9.67576 -9.62546 -9.25471 -8.99271 -7.92029 -5.20622 0.13527 0.81083 1.12844 1.48921 1.50021 1.58275 1.65604 1.75723 2.08878 2.57791 3.41293 3.51017 3.80246 3.87122 4.00566 4.04317 4.11405 4.15535 4.25018 4.26885 4.30710 4.40572 4.55307 4.58009 4.63083 4.65079 4.68375 4.73723 4.83746 4.87037 4.90279 5.04664 5.07385 5.09636 5.15905 5.20924 5.28386 5.35830 5.53548 5.55242 5.58049 5.62477 5.68393 6.29689 6.48940 7.20124 7.35516 8.11815 8.34442 9.31789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.002562 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.813518 B =10925.157331 C =12012.844762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.175 3.825 6 H 0.054 0.946 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.080 0.920 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.288 1.288 14 H -0.300 1.300 15 H -0.267 1.267 16 C -0.143 4.143 17 C 0.114 3.886 18 N -0.602 5.602 19 C 0.512 3.488 20 O -0.586 6.586 21 C -0.125 4.125 22 C -0.037 4.037 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.211 4.211 26 S 0.087 5.913 27 C -0.222 4.222 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.155 0.845 44 H 0.185 0.815 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 6.518 -25.677 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.102 0.898 4 C -0.163 4.163 5 C 0.067 3.933 6 H 0.072 0.928 7 N -0.378 5.378 8 C -0.363 4.363 9 H 0.098 0.902 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.215 1.215 14 H -0.227 1.227 15 H -0.192 1.192 16 C -0.184 4.184 17 C -0.009 4.009 18 N -0.335 5.335 19 C 0.302 3.698 20 O -0.467 6.467 21 C -0.164 4.164 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.171 4.171 25 C -0.346 4.346 26 S 0.351 5.649 27 C -0.358 4.358 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.200 0.800 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.172 0.828 44 H 0.202 0.798 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.720 6.163 -26.308 27.030 hybrid contribution -0.791 -0.003 1.898 2.056 sum -0.071 6.160 -24.410 25.176 Atomic orbital electron populations 1.22071 0.93407 1.02913 1.02661 1.20941 0.95218 0.96245 0.83443 0.89755 1.22001 1.00295 0.96244 0.97718 1.20428 0.96935 0.89945 0.86002 0.92781 1.42685 1.37712 1.29187 1.28198 1.19624 1.09806 1.01166 1.05725 0.90213 1.25549 0.99763 1.02839 0.98995 1.69827 1.29792 1.42893 1.19926 0.85182 0.78537 0.79767 0.76558 1.21527 1.22736 1.19178 1.22469 1.00102 1.00228 0.95577 1.21894 1.02338 0.78119 0.98515 1.48336 1.55065 1.09934 1.20129 1.21233 0.76620 0.87167 0.84783 1.90656 1.59157 1.17098 1.79825 1.21679 1.02726 0.99256 0.92784 1.19933 1.00084 0.96158 0.91614 1.18997 0.94306 1.01491 0.96979 1.20313 1.02293 1.01972 0.92476 1.25914 0.97950 1.05948 1.04790 1.84325 1.16325 1.55661 1.08602 1.25707 1.01785 1.06521 1.01736 0.91675 0.90937 0.91847 0.91271 0.93548 0.80002 0.94241 0.91507 0.93725 0.89620 0.87291 0.86456 0.87774 0.91628 0.90564 0.82782 0.79795 0.81376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.02 71.98 0.65 -2.91 16 2 C 0.15 4.02 3.19 44.83 0.14 4.16 16 3 H 0.08 2.55 7.01 -2.38 -0.02 2.53 16 4 C -0.12 -4.08 4.99 30.53 0.15 -3.92 16 5 C 0.17 6.42 2.53 45.02 0.11 6.53 16 6 H 0.05 1.96 6.43 -2.38 -0.02 1.95 16 7 N -0.74 -36.09 5.12 -322.82 -1.65 -37.74 16 8 C -0.23 -12.35 9.93 84.03 0.83 -11.52 16 9 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 11 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 12 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.14 -4.45 5.66 30.67 0.17 -4.27 16 17 C 0.11 2.49 5.93 86.36 0.51 3.00 16 18 N -0.60 -15.09 2.68 -795.82 -2.14 -17.22 16 19 C 0.51 13.02 7.70 87.66 0.67 13.69 16 20 O -0.59 -19.19 15.40 -3.04 -0.05 -19.24 16 21 C -0.12 -2.19 4.03 29.85 0.12 -2.07 16 22 C -0.04 -0.69 4.76 29.85 0.14 -0.54 16 23 C -0.11 -1.74 5.05 -20.92 -0.11 -1.85 16 24 C -0.14 -2.00 9.98 21.22 0.21 -1.79 16 25 C -0.21 -2.71 11.23 66.72 0.75 -1.96 16 26 S 0.09 1.26 23.34 -56.49 -1.32 -0.06 16 27 C -0.22 -3.64 10.98 66.72 0.73 -2.91 16 28 H 0.06 1.52 5.74 -2.39 -0.01 1.51 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.37 19.90 7.80 -92.71 -0.72 19.18 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.64 7.52 -2.39 -0.02 1.62 16 38 H 0.11 1.77 5.93 -2.38 -0.01 1.75 16 39 H 0.12 1.54 7.94 -2.39 -0.02 1.52 16 40 H 0.10 1.68 7.69 -2.39 -0.02 1.67 16 41 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16 42 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -67.83 372.33 2.99 -64.84 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.26 Total: 31.59 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.57 Total: -10.38 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.51 Total: -114.05 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -1.32 Total: -0.06 kcal Total: -67.83 2.99 -64.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044629644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.633 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds