Wall clock time and date at job start Tue Mar 31 2020 14:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.69863 * 2 1 4 4 C 1.53192 * 109.59055 * 239.64556 * 2 1 3 5 5 C 1.53036 * 109.31468 * 185.57484 * 4 2 1 6 6 H 1.08996 * 109.46119 * 181.37176 * 5 4 2 7 7 N 1.46495 * 109.45991 * 301.34737 * 5 4 2 8 8 C 1.36941 * 119.99952 * 205.00180 * 7 5 4 9 9 H 1.07998 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99980 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99601 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00321 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47439 * 89.99675 * 12 10 8 14 14 H 1.48504 * 109.47345 * 210.00261 * 12 10 8 15 15 H 1.48512 * 109.46897 * 329.99768 * 12 10 8 16 16 C 1.53046 * 109.53659 * 61.36679 * 5 4 2 17 17 C 1.53199 * 109.30791 * 298.63227 * 16 5 4 18 18 N 1.46926 * 108.77678 * 54.64128 * 17 16 5 19 19 C 1.34768 * 120.63366 * 126.40953 * 18 17 16 20 20 O 1.21278 * 120.00392 * 185.04577 * 19 18 17 21 21 C 1.50706 * 119.99911 * 5.04270 * 19 18 17 22 22 C 1.53002 * 109.46990 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47031 * 180.02562 * 22 21 19 24 24 C 1.38422 * 122.53991 * 269.74385 * 23 22 21 25 25 C 1.33390 * 114.92172 * 179.76178 * 24 23 22 26 26 S 1.75885 * 109.59309 * 0.47085 * 25 24 23 27 27 C 1.33394 * 122.54083 * 90.02486 * 23 22 21 28 28 H 1.09001 * 109.46781 * 183.97422 * 1 2 3 29 29 H 1.08995 * 109.47089 * 303.97304 * 1 2 3 30 30 H 1.08998 * 109.47080 * 63.97744 * 1 2 3 31 31 H 1.09003 * 109.49342 * 305.53369 * 4 2 1 32 32 H 1.09001 * 109.49618 * 65.62253 * 4 2 1 33 33 H 0.96997 * 120.00651 * 24.99771 * 7 5 4 34 34 H 0.96997 * 119.99761 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.49650 * 58.58299 * 16 5 4 36 36 H 1.08997 * 109.49655 * 178.65281 * 16 5 4 37 37 H 1.09006 * 109.57994 * 174.42644 * 17 16 5 38 38 H 1.09000 * 109.58887 * 294.70369 * 17 16 5 39 39 H 1.08996 * 109.47499 * 300.00295 * 21 19 18 40 40 H 1.08995 * 109.46658 * 60.00353 * 21 19 18 41 41 H 1.08996 * 109.47395 * 300.00548 * 22 21 19 42 42 H 1.08997 * 109.46816 * 60.00218 * 22 21 19 43 43 H 1.07999 * 122.54301 * 359.97438 * 24 23 22 44 44 H 1.08005 * 125.20867 * 180.20099 * 25 24 23 45 45 H 1.08003 * 125.19815 * 0.02816 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7293 -1.2454 5 6 3.5676 -0.8478 -1.1701 6 1 3.9379 -1.3449 -2.0667 7 7 4.1570 0.4899 -1.0749 8 6 5.4414 0.7040 -1.4989 9 1 6.0199 -0.1135 -1.9032 10 6 5.9997 1.9717 -1.4092 11 7 7.2344 2.1773 -1.8163 12 14 4.9990 3.3858 -0.7106 13 1 5.2066 3.4613 0.7578 14 1 5.4355 4.6588 -1.3385 15 1 3.5589 3.1614 -0.9960 16 6 3.9570 -1.6656 0.0635 17 6 3.4651 -0.9468 1.3238 18 7 2.0226 -0.6995 1.1945 19 6 1.1675 -1.1061 2.1536 20 8 -0.0280 -0.9786 1.9941 21 6 1.6969 -1.7195 3.4243 22 6 0.5267 -2.0901 4.3377 23 6 1.0560 -2.7028 5.6087 24 6 1.2651 -4.0641 5.7481 25 6 1.7421 -4.4407 6.9355 26 16 1.9398 -3.0294 7.9664 27 6 1.3534 -1.9752 6.6864 28 1 -0.3633 -1.0252 0.0712 29 1 -0.3633 0.5742 0.8522 30 1 -0.3633 0.4509 -0.9235 31 1 1.6030 -1.7253 -1.2913 32 1 1.7661 -0.1668 -2.1368 33 1 3.6376 1.2241 -0.7115 34 1 7.6247 3.0630 -1.7532 35 1 3.4984 -2.6527 0.0053 36 1 5.0413 -1.7699 0.1034 37 1 3.6519 -1.5716 2.1972 38 1 3.9921 0.0010 1.4331 39 1 2.2690 -2.6157 3.1844 40 1 2.3412 -1.0024 3.9328 41 1 -0.0451 -1.1937 4.5776 42 1 -0.1181 -2.8070 3.8294 43 1 1.0608 -4.7675 4.9546 44 1 1.9681 -5.4573 7.2218 45 1 1.2497 -0.9028 6.7615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044629646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:18 Heat of formation + Delta-G solvation = 19.638650 kcal Electronic energy + Delta-G solvation = -25402.004577 eV Core-core repulsion = 21932.807361 eV Total energy + Delta-G solvation = -3469.197216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47702 -38.64984 -37.53905 -34.33169 -33.61305 -32.07284 -31.92572 -29.75109 -29.24085 -27.17240 -25.60082 -24.19905 -23.14709 -22.89454 -21.58327 -19.87093 -18.93021 -18.29712 -17.83635 -17.77895 -16.56953 -15.96067 -15.75280 -15.21073 -14.71757 -14.37250 -14.04746 -14.01498 -13.68540 -13.39978 -13.29403 -13.13850 -13.01277 -12.63858 -12.48125 -12.26163 -12.12683 -12.09434 -11.94124 -11.61918 -11.38506 -11.12135 -11.05496 -10.93969 -10.91845 -10.76566 -10.47850 -10.26525 -10.03686 -9.62141 -9.07277 -8.99857 -8.89315 -8.58165 -8.26855 -7.32713 -5.82148 -3.17848 0.76462 1.42651 1.74779 2.43485 2.76225 3.18327 3.31996 3.34991 3.41323 4.49912 4.53625 4.67579 4.90870 4.93601 4.96374 5.12043 5.13551 5.20754 5.30465 5.31515 5.35525 5.45302 5.52793 5.56128 5.60176 5.63105 5.73531 5.82092 5.88039 5.95004 5.98221 6.04406 6.17187 6.20648 6.29448 6.31243 6.38269 6.47755 6.60019 6.64077 6.69731 6.95429 7.65255 7.94254 8.35092 8.37089 9.15142 9.87816 10.07502 11.36224 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003054 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.109945 B = 9167.332873 C = 9880.332427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.143 3.857 3 H 0.069 0.931 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.059 0.941 7 N -0.747 5.747 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.879 3.121 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 C -0.149 4.149 17 C 0.112 3.888 18 N -0.601 5.601 19 C 0.513 3.487 20 O -0.545 6.545 21 C -0.136 4.136 22 C -0.043 4.043 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.212 4.212 26 S 0.084 5.916 27 C -0.209 4.209 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.141 0.859 44 H 0.163 0.837 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 -12.121 15.797 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.175 4.175 5 C 0.070 3.930 6 H 0.077 0.923 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.581 5.581 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.189 4.189 17 C -0.011 4.011 18 N -0.334 5.334 19 C 0.301 3.699 20 O -0.424 6.424 21 C -0.176 4.176 22 C -0.083 4.083 23 C -0.111 4.111 24 C -0.159 4.159 25 C -0.348 4.348 26 S 0.348 5.652 27 C -0.345 4.345 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.158 0.842 44 H 0.181 0.819 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.787 -11.841 17.108 24.422 hybrid contribution -0.713 0.912 -0.922 1.479 sum -13.500 -10.929 16.186 23.742 Atomic orbital electron populations 1.22194 0.92918 1.03468 1.00332 1.21254 0.95125 0.95399 0.84209 0.91274 1.22282 0.97327 1.00653 0.97271 1.20157 0.90195 0.87099 0.95587 0.92259 1.42876 1.14194 1.05234 1.76731 1.19070 0.87970 0.95930 1.34273 0.89137 1.24650 0.96043 0.97067 1.01198 1.69693 1.13443 1.22048 1.52883 0.86643 0.79863 0.83467 0.79091 1.21104 1.21669 1.20400 1.22479 1.01878 0.97995 0.96597 1.21744 0.79128 1.01551 0.98639 1.48225 1.07905 1.57107 1.20196 1.20574 0.86433 0.78183 0.84696 1.90726 1.15635 1.56370 1.79642 1.21717 0.99548 1.02283 0.94049 1.20041 0.96336 1.01330 0.90594 1.19009 1.02287 0.93188 0.96621 1.20149 1.02179 0.95616 0.97978 1.25599 1.08909 1.02238 0.98006 1.84296 1.65036 0.98302 1.17565 1.25516 1.08840 1.03467 0.96645 0.91141 0.91431 0.94211 0.91594 0.90723 0.80624 0.93040 0.92910 0.90277 0.90722 0.90342 0.88903 0.88990 0.90285 0.90124 0.84155 0.81930 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.60 37.16 0.28 -1.67 16 2 C 0.14 2.23 3.19 -67.60 -0.22 2.02 16 3 H 0.07 1.20 6.64 -51.93 -0.34 0.86 16 4 C -0.14 -2.10 5.07 -26.61 -0.13 -2.24 16 5 C 0.18 3.19 3.10 -67.89 -0.21 2.98 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 7 N -0.75 -16.41 4.11 -53.39 -0.22 -16.63 16 8 C -0.24 -6.46 10.41 -15.06 -0.16 -6.62 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 12 Si 0.88 21.56 27.73 -169.99 -4.71 16.84 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 16 C -0.15 -2.29 5.78 -26.60 -0.15 -2.44 16 17 C 0.11 1.61 6.07 -3.71 -0.02 1.59 16 18 N -0.60 -8.76 2.97 -165.21 -0.49 -9.25 16 19 C 0.51 7.07 7.60 -10.99 -0.08 6.98 16 20 O -0.54 -8.62 11.38 5.56 0.06 -8.56 16 21 C -0.14 -1.43 4.08 -27.88 -0.11 -1.54 16 22 C -0.04 -0.43 4.76 -27.88 -0.13 -0.56 16 23 C -0.10 -0.93 5.06 -106.25 -0.54 -1.47 16 24 C -0.13 -1.12 9.98 -41.21 -0.41 -1.53 16 25 C -0.21 -1.70 11.23 29.04 0.33 -1.37 16 26 S 0.08 0.70 23.34 -107.50 -2.51 -1.81 16 27 C -0.21 -1.89 10.98 29.04 0.32 -1.57 16 28 H 0.07 1.09 6.73 -51.93 -0.35 0.74 16 29 H 0.07 1.07 6.76 -51.93 -0.35 0.72 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.36 7.95 3.92 -40.82 -0.16 7.79 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 0.87 5.96 -51.93 -0.31 0.56 16 38 H 0.08 1.31 7.74 -51.93 -0.40 0.91 16 39 H 0.09 0.88 7.48 -51.93 -0.39 0.49 16 40 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 41 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -30.58 363.50 -9.92 -40.50 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.96 Total: 8.56 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.34 Total: -7.37 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.06 Total: -53.63 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.58 -9.92 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044629646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.135 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds