Wall clock time and date at job start Tue Mar 31 2020 14:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.69863 * 2 1 4 4 C 1.53192 * 109.59055 * 239.64556 * 2 1 3 5 5 C 1.53036 * 109.31468 * 185.57484 * 4 2 1 6 6 H 1.08996 * 109.46119 * 181.37176 * 5 4 2 7 7 N 1.46495 * 109.45991 * 301.34737 * 5 4 2 8 8 C 1.36941 * 119.99952 * 205.00180 * 7 5 4 9 9 H 1.07998 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99980 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99601 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00321 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47439 * 89.99675 * 12 10 8 14 14 H 1.48504 * 109.47345 * 210.00261 * 12 10 8 15 15 H 1.48512 * 109.46897 * 329.99768 * 12 10 8 16 16 C 1.53046 * 109.53659 * 61.36679 * 5 4 2 17 17 C 1.53199 * 109.30791 * 298.63227 * 16 5 4 18 18 N 1.46926 * 108.77678 * 54.64128 * 17 16 5 19 19 C 1.34768 * 120.63366 * 126.40953 * 18 17 16 20 20 O 1.21278 * 120.00392 * 185.04577 * 19 18 17 21 21 C 1.50706 * 119.99911 * 5.04270 * 19 18 17 22 22 C 1.53002 * 109.46990 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47031 * 180.02562 * 22 21 19 24 24 C 1.38422 * 122.53991 * 269.74385 * 23 22 21 25 25 C 1.33390 * 114.92172 * 179.76178 * 24 23 22 26 26 S 1.75885 * 109.59309 * 0.47085 * 25 24 23 27 27 C 1.33394 * 122.54083 * 90.02486 * 23 22 21 28 28 H 1.09001 * 109.46781 * 183.97422 * 1 2 3 29 29 H 1.08995 * 109.47089 * 303.97304 * 1 2 3 30 30 H 1.08998 * 109.47080 * 63.97744 * 1 2 3 31 31 H 1.09003 * 109.49342 * 305.53369 * 4 2 1 32 32 H 1.09001 * 109.49618 * 65.62253 * 4 2 1 33 33 H 0.96997 * 120.00651 * 24.99771 * 7 5 4 34 34 H 0.96997 * 119.99761 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.49650 * 58.58299 * 16 5 4 36 36 H 1.08997 * 109.49655 * 178.65281 * 16 5 4 37 37 H 1.09006 * 109.57994 * 174.42644 * 17 16 5 38 38 H 1.09000 * 109.58887 * 294.70369 * 17 16 5 39 39 H 1.08996 * 109.47499 * 300.00295 * 21 19 18 40 40 H 1.08995 * 109.46658 * 60.00353 * 21 19 18 41 41 H 1.08996 * 109.47395 * 300.00548 * 22 21 19 42 42 H 1.08997 * 109.46816 * 60.00218 * 22 21 19 43 43 H 1.07999 * 122.54301 * 359.97438 * 24 23 22 44 44 H 1.08005 * 125.20867 * 180.20099 * 25 24 23 45 45 H 1.08003 * 125.19815 * 0.02816 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7293 -1.2454 5 6 3.5676 -0.8478 -1.1701 6 1 3.9379 -1.3449 -2.0667 7 7 4.1570 0.4899 -1.0749 8 6 5.4414 0.7040 -1.4989 9 1 6.0199 -0.1135 -1.9032 10 6 5.9997 1.9717 -1.4092 11 7 7.2344 2.1773 -1.8163 12 14 4.9990 3.3858 -0.7106 13 1 5.2066 3.4613 0.7578 14 1 5.4355 4.6588 -1.3385 15 1 3.5589 3.1614 -0.9960 16 6 3.9570 -1.6656 0.0635 17 6 3.4651 -0.9468 1.3238 18 7 2.0226 -0.6995 1.1945 19 6 1.1675 -1.1061 2.1536 20 8 -0.0280 -0.9786 1.9941 21 6 1.6969 -1.7195 3.4243 22 6 0.5267 -2.0901 4.3377 23 6 1.0560 -2.7028 5.6087 24 6 1.2651 -4.0641 5.7481 25 6 1.7421 -4.4407 6.9355 26 16 1.9398 -3.0294 7.9664 27 6 1.3534 -1.9752 6.6864 28 1 -0.3633 -1.0252 0.0712 29 1 -0.3633 0.5742 0.8522 30 1 -0.3633 0.4509 -0.9235 31 1 1.6030 -1.7253 -1.2913 32 1 1.7661 -0.1668 -2.1368 33 1 3.6376 1.2241 -0.7115 34 1 7.6247 3.0630 -1.7532 35 1 3.4984 -2.6527 0.0053 36 1 5.0413 -1.7699 0.1034 37 1 3.6519 -1.5716 2.1972 38 1 3.9921 0.0010 1.4331 39 1 2.2690 -2.6157 3.1844 40 1 2.3412 -1.0024 3.9328 41 1 -0.0451 -1.1937 4.5776 42 1 -0.1181 -2.8070 3.8294 43 1 1.0608 -4.7675 4.9546 44 1 1.9681 -5.4573 7.2218 45 1 1.2497 -0.9028 6.7615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044629646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:18 Heat of formation + Delta-G solvation = 3.073073 kcal Electronic energy + Delta-G solvation = -25402.722915 eV Core-core repulsion = 21932.807361 eV Total energy + Delta-G solvation = -3469.915553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62630 -39.44611 -38.73570 -35.93917 -34.62559 -33.81524 -32.99039 -31.43582 -30.00070 -28.41418 -26.46539 -25.59402 -24.91121 -23.71408 -22.67437 -21.14697 -19.79865 -19.60764 -19.49740 -18.51922 -17.60813 -17.11668 -16.84705 -16.49463 -16.12787 -15.73913 -15.23154 -15.17358 -15.05972 -14.74792 -14.39447 -14.15307 -14.00405 -13.81325 -13.66932 -13.36292 -13.22062 -13.08266 -12.98470 -12.81405 -12.73146 -12.60148 -12.54167 -12.07935 -11.98081 -11.94768 -11.88209 -11.71368 -11.58408 -11.40561 -10.94108 -10.03412 -9.67352 -9.52557 -9.25357 -9.24776 -7.99963 -5.31616 0.13039 0.80666 1.12136 1.36478 1.37559 1.44994 1.69136 1.75431 2.09467 2.48147 3.32006 3.53836 3.60451 3.88839 3.95789 3.99356 4.06085 4.15449 4.23339 4.25853 4.31820 4.35423 4.47276 4.58622 4.64404 4.66031 4.72220 4.78334 4.86966 4.89996 4.92751 5.04458 5.10647 5.15831 5.20457 5.23893 5.26454 5.31948 5.42279 5.55259 5.62495 5.73674 5.82565 6.24395 6.53955 7.10761 7.25704 7.87594 8.05586 9.21853 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003054 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.109945 B = 9167.332873 C = 9880.332427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.141 3.859 3 H 0.051 0.949 4 C -0.125 4.125 5 C 0.170 3.830 6 H 0.048 0.952 7 N -0.747 5.747 8 C -0.217 4.217 9 H 0.062 0.938 10 C -0.061 4.061 11 N -0.984 5.984 12 Si 0.942 3.058 13 H -0.279 1.279 14 H -0.300 1.300 15 H -0.258 1.258 16 C -0.141 4.141 17 C 0.117 3.883 18 N -0.603 5.603 19 C 0.511 3.489 20 O -0.565 6.565 21 C -0.128 4.128 22 C -0.034 4.034 23 C -0.106 4.106 24 C -0.141 4.141 25 C -0.212 4.212 26 S 0.086 5.914 27 C -0.222 4.222 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.362 0.638 34 H 0.256 0.744 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.153 0.847 44 H 0.184 0.816 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 -13.386 17.273 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.037 3.963 3 H 0.069 0.931 4 C -0.164 4.164 5 C 0.062 3.938 6 H 0.066 0.934 7 N -0.391 5.391 8 C -0.348 4.348 9 H 0.080 0.920 10 C -0.252 4.252 11 N -0.635 5.635 12 Si 0.770 3.230 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.183 1.183 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.336 5.336 19 C 0.301 3.699 20 O -0.445 6.445 21 C -0.168 4.168 22 C -0.075 4.075 23 C -0.118 4.118 24 C -0.171 4.171 25 C -0.347 4.347 26 S 0.350 5.650 27 C -0.357 4.357 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.196 0.804 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.171 0.829 44 H 0.201 0.799 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.487 -13.152 18.605 27.000 hybrid contribution -0.231 1.177 -1.382 1.830 sum -14.717 -11.975 17.223 25.625 Atomic orbital electron populations 1.22037 0.92126 1.03027 1.00379 1.21196 0.95612 0.94622 0.84836 0.93141 1.22170 0.95160 1.01797 0.97267 1.20410 0.91749 0.85219 0.96400 0.93355 1.42869 1.12593 1.07202 1.76452 1.19027 0.89290 0.94750 1.31718 0.92030 1.25346 0.97120 0.99856 1.02901 1.69861 1.15577 1.22394 1.55696 0.85608 0.79350 0.79673 0.78327 1.20542 1.22659 1.18274 1.22338 1.01121 0.98964 0.95717 1.21693 0.78764 1.00775 0.99349 1.48247 1.07978 1.57205 1.20193 1.21099 0.86047 0.77555 0.85162 1.90724 1.16612 1.57105 1.80107 1.21713 0.99878 1.02883 0.92321 1.19916 0.95960 1.00808 0.90795 1.19019 1.02747 0.93665 0.96383 1.20323 1.02573 0.95535 0.98712 1.25909 1.08114 1.03063 0.97610 1.84307 1.64755 0.98483 1.17446 1.25709 1.08943 1.04111 0.96922 0.91548 0.92621 0.93109 0.89599 0.90828 0.80413 0.93547 0.90170 0.91868 0.87382 0.92837 0.87144 0.88118 0.91271 0.90526 0.82930 0.79898 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 7.60 71.98 0.55 -2.73 16 2 C 0.14 4.12 3.19 44.98 0.14 4.27 16 3 H 0.05 1.68 6.64 -2.39 -0.02 1.66 16 4 C -0.13 -3.59 5.07 30.67 0.16 -3.43 16 5 C 0.17 5.83 3.10 45.02 0.14 5.97 16 6 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 7 N -0.75 -32.34 4.11 -322.82 -1.33 -33.67 16 8 C -0.22 -11.68 10.41 84.03 0.87 -10.80 16 9 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 10 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 11 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 12 Si 0.94 44.81 27.73 68.60 1.90 46.71 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 15 H -0.26 -11.23 6.52 99.48 0.65 -10.59 16 16 C -0.14 -4.06 5.78 30.68 0.18 -3.88 16 17 C 0.12 3.08 6.07 86.36 0.52 3.60 16 18 N -0.60 -16.15 2.97 -795.00 -2.36 -18.51 16 19 C 0.51 12.85 7.60 87.66 0.67 13.52 16 20 O -0.57 -16.83 11.38 -3.02 -0.03 -16.87 16 21 C -0.13 -2.32 4.08 29.85 0.12 -2.20 16 22 C -0.03 -0.62 4.76 29.85 0.14 -0.47 16 23 C -0.11 -1.77 5.06 -20.92 -0.11 -1.87 16 24 C -0.14 -2.11 9.98 21.22 0.21 -1.90 16 25 C -0.21 -2.87 11.23 66.72 0.75 -2.12 16 26 S 0.09 1.27 23.34 -56.49 -1.32 -0.05 16 27 C -0.22 -3.61 10.98 66.72 0.73 -2.88 16 28 H 0.07 1.90 6.73 -2.39 -0.02 1.88 16 29 H 0.05 1.68 6.76 -2.39 -0.02 1.66 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 33 H 0.36 15.53 3.92 -92.71 -0.36 15.16 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.11 2.13 5.96 -2.38 -0.01 2.12 16 38 H 0.05 1.71 7.74 -2.39 -0.02 1.69 16 39 H 0.11 1.66 7.48 -2.39 -0.02 1.64 16 40 H 0.10 1.71 8.11 -2.39 -0.02 1.69 16 41 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 42 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -66.44 363.50 3.27 -63.17 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.56 Total: 28.70 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.55 Total: -7.96 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.39 Total: -113.71 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.03 Total: -16.87 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.32 Total: -0.05 kcal Total: -66.44 3.27 -63.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044629646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.247 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds