Wall clock time and date at job start Tue Mar 31 2020 14:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.70459 * 2 1 4 4 C 1.53198 * 109.58401 * 239.64672 * 2 1 3 5 5 C 1.53046 * 109.31270 * 185.57764 * 4 2 1 6 6 H 1.09003 * 109.45835 * 301.35148 * 5 4 2 7 7 N 1.46502 * 109.46244 * 181.38897 * 5 4 2 8 8 C 1.36937 * 120.00143 * 154.93244 * 7 5 4 9 9 H 1.08001 * 119.99747 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99742 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00419 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99739 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46979 * 60.00214 * 12 10 8 14 14 H 1.48505 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47113 * 300.00008 * 12 10 8 16 16 C 1.53041 * 109.53646 * 61.36747 * 5 4 2 17 17 C 1.53198 * 109.31296 * 298.63596 * 16 5 4 18 18 N 1.46921 * 108.77501 * 54.63276 * 17 16 5 19 19 C 1.34777 * 120.62828 * 126.11567 * 18 17 16 20 20 O 1.21288 * 119.99793 * 174.22659 * 19 18 17 21 21 C 1.50699 * 120.00049 * 354.22547 * 19 18 17 22 22 C 1.53003 * 109.46848 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.46548 * 180.02562 * 22 21 19 24 24 C 1.38423 * 122.53983 * 90.00828 * 23 22 21 25 25 C 1.33391 * 114.92157 * 179.97438 * 24 23 22 26 26 S 1.75885 * 109.59291 * 359.97438 * 25 24 23 27 27 C 1.33387 * 122.53917 * 269.70335 * 23 22 21 28 28 H 1.08997 * 109.46916 * 305.36710 * 1 2 3 29 29 H 1.09001 * 109.46970 * 65.36520 * 1 2 3 30 30 H 1.08994 * 109.47246 * 185.36431 * 1 2 3 31 31 H 1.08998 * 109.49530 * 65.63258 * 4 2 1 32 32 H 1.08991 * 109.49943 * 305.52836 * 4 2 1 33 33 H 0.96996 * 119.99442 * 334.93583 * 7 5 4 34 34 H 0.96998 * 120.00388 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.49639 * 178.68243 * 16 5 4 36 36 H 1.09000 * 109.49621 * 58.58394 * 16 5 4 37 37 H 1.09000 * 109.58652 * 294.84791 * 17 16 5 38 38 H 1.08995 * 109.70141 * 174.49340 * 17 16 5 39 39 H 1.09000 * 109.47490 * 299.99663 * 21 19 18 40 40 H 1.09004 * 109.46891 * 60.00144 * 21 19 18 41 41 H 1.09000 * 109.47448 * 299.99931 * 22 21 19 42 42 H 1.09004 * 109.47068 * 60.00484 * 22 21 19 43 43 H 1.08001 * 122.54030 * 359.97438 * 24 23 22 44 44 H 1.08001 * 125.20213 * 180.02562 * 25 24 23 45 45 H 1.08002 * 125.20614 * 0.03544 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0434 -0.7294 -1.2455 5 6 3.5674 -0.8480 -1.1703 6 1 4.0061 0.1473 -1.0993 7 7 4.0652 -1.5157 -2.3756 8 6 5.3492 -1.2976 -2.7984 9 1 5.9951 -0.6336 -2.2431 10 6 5.8205 -1.9298 -3.9407 11 7 5.0335 -2.7392 -4.6172 12 14 7.5724 -1.6328 -4.5171 13 1 8.5211 -2.0556 -3.4558 14 1 7.8277 -2.4194 -5.7506 15 1 7.7612 -0.1879 -4.8030 16 6 3.9568 -1.6658 0.0633 17 6 3.4650 -0.9472 1.3236 18 7 2.0226 -0.6997 1.1944 19 6 1.1668 -1.1117 2.1506 20 8 -0.0064 -0.8109 2.0850 21 6 1.6676 -1.9460 3.3013 22 6 0.5027 -2.2758 4.2370 23 6 1.0037 -3.1096 5.3880 24 6 1.4661 -2.5503 6.5668 25 6 1.8725 -3.4290 7.4844 26 16 1.6760 -5.0631 6.8640 27 6 1.0297 -4.4427 5.3504 28 1 -0.3633 0.5948 0.8380 29 1 -0.3633 0.4284 -0.9341 30 1 -0.3633 -1.0231 0.0961 31 1 1.7660 -0.1667 -2.1368 32 1 1.6029 -1.7252 -1.2915 33 1 3.4851 -2.1122 -2.8741 34 1 5.3627 -3.1807 -5.4156 35 1 5.0412 -1.7698 0.1034 36 1 3.4982 -2.6529 0.0050 37 1 3.9903 0.0018 1.4316 38 1 3.6520 -1.5699 2.1984 39 1 2.0998 -2.8706 2.9188 40 1 2.4274 -1.3894 3.8500 41 1 0.0709 -1.3511 4.6196 42 1 -0.2574 -2.8322 3.6886 43 1 1.4954 -1.4833 6.7312 44 1 2.2619 -3.1758 8.4594 45 1 0.7054 -5.0485 4.5172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044629647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:22 Heat of formation + Delta-G solvation = 11.860860 kcal Electronic energy + Delta-G solvation = -24863.139198 eV Core-core repulsion = 21393.604712 eV Total energy + Delta-G solvation = -3469.534486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45054 -38.62654 -37.36171 -34.50447 -33.62784 -32.06004 -31.91373 -29.51118 -29.06367 -27.00894 -25.61312 -24.23688 -22.92689 -22.91604 -21.35705 -20.07636 -18.94097 -18.78895 -17.84639 -17.12481 -16.73023 -16.01961 -15.54455 -15.28140 -14.84177 -14.28613 -13.91368 -13.86938 -13.70027 -13.40869 -13.29124 -13.19453 -12.93311 -12.73306 -12.39805 -12.23416 -12.11314 -11.96049 -11.83542 -11.59560 -11.34589 -11.15543 -10.94046 -10.90909 -10.84650 -10.75189 -10.43564 -10.28461 -9.86697 -9.72694 -9.08561 -8.94524 -8.92593 -8.59367 -8.38771 -7.00357 -5.79681 -3.09093 0.75854 1.42097 1.74378 2.42300 2.71999 3.13661 3.41143 3.45769 3.46873 4.46551 4.55210 4.66558 4.88621 4.90761 4.96470 5.08865 5.16846 5.23397 5.30158 5.34071 5.38304 5.45911 5.50325 5.57154 5.60496 5.64357 5.80906 5.83422 5.90859 5.94500 6.01990 6.14523 6.20040 6.26471 6.28522 6.37564 6.45099 6.48687 6.54739 6.75061 6.90553 7.03804 7.58675 7.65505 8.31241 8.38560 9.49664 10.07194 10.41885 11.42800 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002617 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.967680 B =10694.729188 C =11942.234349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.107 3.893 18 N -0.604 5.604 19 C 0.514 3.486 20 O -0.542 6.542 21 C -0.136 4.136 22 C -0.043 4.043 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.213 4.213 26 S 0.086 5.914 27 C -0.208 4.208 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 0.341 22.957 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 H 0.087 0.913 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.337 5.337 19 C 0.303 3.697 20 O -0.421 6.421 21 C -0.176 4.176 22 C -0.083 4.083 23 C -0.112 4.112 24 C -0.159 4.159 25 C -0.349 4.349 26 S 0.349 5.651 27 C -0.343 4.343 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.158 0.842 44 H 0.180 0.820 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.185 -0.915 23.443 24.847 hybrid contribution 0.861 1.139 -1.111 1.809 sum -7.324 0.224 22.332 23.503 Atomic orbital electron populations 1.22173 0.92937 1.03362 1.00716 1.21292 0.95340 0.95104 0.83926 0.91289 1.22298 0.97545 1.00911 0.96614 1.20160 0.90926 0.94934 0.87105 0.93503 1.42424 1.12939 1.54337 1.26703 1.19181 0.89144 1.22305 1.06547 0.91238 1.24746 0.98152 0.99811 0.98173 1.69648 1.35499 1.33449 1.19475 0.86285 0.84579 0.77477 0.77930 1.21270 1.21707 1.21260 1.22677 1.01706 1.00022 0.94842 1.21867 0.79583 1.00573 0.99646 1.48253 1.07628 1.57373 1.20453 1.20576 0.85993 0.79914 0.83262 1.90724 1.17271 1.57269 1.76832 1.21718 0.99730 1.00850 0.95324 1.20047 0.96609 0.99373 0.92306 1.19005 1.02147 0.93292 0.96779 1.20141 1.01674 1.01053 0.93075 1.25599 1.09440 0.95513 1.04309 1.84315 1.62392 1.08507 1.09861 1.25535 1.09014 0.98002 1.01783 0.90690 0.93894 0.91930 0.90688 0.91876 0.78274 0.93426 0.90678 0.92214 0.91503 0.90384 0.88830 0.89045 0.90144 0.90201 0.84196 0.81959 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.61 37.15 0.28 -1.64 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.35 16 5 C 0.18 3.37 2.73 -67.88 -0.19 3.19 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.61 5.12 -53.38 -0.27 -17.88 16 8 C -0.24 -6.49 9.93 -15.06 -0.15 -6.63 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.36 5.50 -17.44 -0.10 -0.45 16 11 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 12 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 17 C 0.11 1.33 6.35 -3.71 -0.02 1.30 16 18 N -0.60 -8.09 2.97 -165.22 -0.49 -8.58 16 19 C 0.51 6.73 7.50 -10.99 -0.08 6.65 16 20 O -0.54 -8.34 11.55 5.55 0.06 -8.28 16 21 C -0.14 -1.35 4.04 -27.88 -0.11 -1.46 16 22 C -0.04 -0.42 4.76 -27.88 -0.13 -0.55 16 23 C -0.10 -0.91 5.05 -106.25 -0.54 -1.45 16 24 C -0.13 -1.07 9.98 -41.21 -0.41 -1.49 16 25 C -0.21 -1.65 11.23 29.04 0.33 -1.32 16 26 S 0.09 0.70 23.34 -107.50 -2.51 -1.81 16 27 C -0.21 -1.85 10.98 29.04 0.32 -1.53 16 28 H 0.07 1.11 6.54 -51.93 -0.34 0.77 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.98 6.95 -51.93 -0.36 0.61 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.79 5.92 -51.93 -0.31 0.49 16 39 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 40 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 41 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -30.61 370.96 -10.41 -41.02 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.17 Total: 8.57 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.32 Total: -8.48 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.04 Total: -53.58 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.06 Total: -8.28 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.61 -10.41 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044629647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.882 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds