Wall clock time and date at job start Tue Mar 31 2020 14:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.70459 * 2 1 4 4 C 1.53198 * 109.58401 * 239.64672 * 2 1 3 5 5 C 1.53046 * 109.31270 * 185.57764 * 4 2 1 6 6 H 1.09003 * 109.45835 * 301.35148 * 5 4 2 7 7 N 1.46502 * 109.46244 * 181.38897 * 5 4 2 8 8 C 1.36937 * 120.00143 * 154.93244 * 7 5 4 9 9 H 1.08001 * 119.99747 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99742 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00419 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99739 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46979 * 60.00214 * 12 10 8 14 14 H 1.48505 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47113 * 300.00008 * 12 10 8 16 16 C 1.53041 * 109.53646 * 61.36747 * 5 4 2 17 17 C 1.53198 * 109.31296 * 298.63596 * 16 5 4 18 18 N 1.46921 * 108.77501 * 54.63276 * 17 16 5 19 19 C 1.34777 * 120.62828 * 126.11567 * 18 17 16 20 20 O 1.21288 * 119.99793 * 174.22659 * 19 18 17 21 21 C 1.50699 * 120.00049 * 354.22547 * 19 18 17 22 22 C 1.53003 * 109.46848 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.46548 * 180.02562 * 22 21 19 24 24 C 1.38423 * 122.53983 * 90.00828 * 23 22 21 25 25 C 1.33391 * 114.92157 * 179.97438 * 24 23 22 26 26 S 1.75885 * 109.59291 * 359.97438 * 25 24 23 27 27 C 1.33387 * 122.53917 * 269.70335 * 23 22 21 28 28 H 1.08997 * 109.46916 * 305.36710 * 1 2 3 29 29 H 1.09001 * 109.46970 * 65.36520 * 1 2 3 30 30 H 1.08994 * 109.47246 * 185.36431 * 1 2 3 31 31 H 1.08998 * 109.49530 * 65.63258 * 4 2 1 32 32 H 1.08991 * 109.49943 * 305.52836 * 4 2 1 33 33 H 0.96996 * 119.99442 * 334.93583 * 7 5 4 34 34 H 0.96998 * 120.00388 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.49639 * 178.68243 * 16 5 4 36 36 H 1.09000 * 109.49621 * 58.58394 * 16 5 4 37 37 H 1.09000 * 109.58652 * 294.84791 * 17 16 5 38 38 H 1.08995 * 109.70141 * 174.49340 * 17 16 5 39 39 H 1.09000 * 109.47490 * 299.99663 * 21 19 18 40 40 H 1.09004 * 109.46891 * 60.00144 * 21 19 18 41 41 H 1.09000 * 109.47448 * 299.99931 * 22 21 19 42 42 H 1.09004 * 109.47068 * 60.00484 * 22 21 19 43 43 H 1.08001 * 122.54030 * 359.97438 * 24 23 22 44 44 H 1.08001 * 125.20213 * 180.02562 * 25 24 23 45 45 H 1.08002 * 125.20614 * 0.03544 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0434 -0.7294 -1.2455 5 6 3.5674 -0.8480 -1.1703 6 1 4.0061 0.1473 -1.0993 7 7 4.0652 -1.5157 -2.3756 8 6 5.3492 -1.2976 -2.7984 9 1 5.9951 -0.6336 -2.2431 10 6 5.8205 -1.9298 -3.9407 11 7 5.0335 -2.7392 -4.6172 12 14 7.5724 -1.6328 -4.5171 13 1 8.5211 -2.0556 -3.4558 14 1 7.8277 -2.4194 -5.7506 15 1 7.7612 -0.1879 -4.8030 16 6 3.9568 -1.6658 0.0633 17 6 3.4650 -0.9472 1.3236 18 7 2.0226 -0.6997 1.1944 19 6 1.1668 -1.1117 2.1506 20 8 -0.0064 -0.8109 2.0850 21 6 1.6676 -1.9460 3.3013 22 6 0.5027 -2.2758 4.2370 23 6 1.0037 -3.1096 5.3880 24 6 1.4661 -2.5503 6.5668 25 6 1.8725 -3.4290 7.4844 26 16 1.6760 -5.0631 6.8640 27 6 1.0297 -4.4427 5.3504 28 1 -0.3633 0.5948 0.8380 29 1 -0.3633 0.4284 -0.9341 30 1 -0.3633 -1.0231 0.0961 31 1 1.7660 -0.1667 -2.1368 32 1 1.6029 -1.7252 -1.2915 33 1 3.4851 -2.1122 -2.8741 34 1 5.3627 -3.1807 -5.4156 35 1 5.0412 -1.7698 0.1034 36 1 3.4982 -2.6529 0.0050 37 1 3.9903 0.0018 1.4316 38 1 3.6520 -1.5699 2.1984 39 1 2.0998 -2.8706 2.9188 40 1 2.4274 -1.3894 3.8500 41 1 0.0709 -1.3511 4.6196 42 1 -0.2574 -2.8322 3.6886 43 1 1.4954 -1.4833 6.7312 44 1 2.2619 -3.1758 8.4594 45 1 0.7054 -5.0485 4.5172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044629647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:21 Heat of formation + Delta-G solvation = -4.755495 kcal Electronic energy + Delta-G solvation = -24863.859737 eV Core-core repulsion = 21393.604712 eV Total energy + Delta-G solvation = -3470.255025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54653 -39.36871 -38.59203 -36.14840 -34.60549 -33.72234 -32.98720 -31.00696 -29.95865 -28.32850 -26.47922 -25.89622 -24.38468 -23.70163 -22.46427 -21.49680 -19.95012 -19.57509 -19.07540 -18.48986 -17.71259 -17.11232 -16.73944 -16.51628 -16.03706 -15.55132 -15.44598 -15.19140 -14.87256 -14.62083 -14.48334 -13.99950 -13.86701 -13.78258 -13.42020 -13.36434 -13.14843 -13.03768 -12.84486 -12.79698 -12.72145 -12.61454 -12.53316 -12.21707 -12.00864 -11.95083 -11.86192 -11.69104 -11.57828 -11.34407 -10.87150 -10.06563 -9.66906 -9.53187 -9.24922 -9.00106 -7.92417 -5.21252 0.13652 0.81112 1.12968 1.48576 1.51128 1.57063 1.68678 1.77089 2.11188 2.57482 3.40662 3.54728 3.75508 3.88644 4.01716 4.06793 4.11382 4.16526 4.25966 4.26326 4.33569 4.38459 4.58119 4.63231 4.64213 4.66404 4.72977 4.74312 4.84364 4.87972 4.90999 5.03492 5.09153 5.16071 5.18574 5.21573 5.30925 5.42939 5.51334 5.55947 5.56385 5.62954 5.74237 6.29059 6.53561 7.26986 7.35038 8.11048 8.33967 9.31097 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002617 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.967680 B =10694.729188 C =11942.234349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.151 3.849 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.173 3.827 6 H 0.047 0.953 7 N -0.739 5.739 8 C -0.235 4.235 9 H 0.079 0.921 10 C -0.078 4.078 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.276 1.276 14 H -0.300 1.300 15 H -0.278 1.278 16 C -0.141 4.141 17 C 0.115 3.885 18 N -0.607 5.607 19 C 0.511 3.489 20 O -0.567 6.567 21 C -0.128 4.128 22 C -0.036 4.036 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.211 4.211 26 S 0.085 5.915 27 C -0.223 4.223 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.155 0.845 44 H 0.185 0.815 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 1.324 25.320 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 H 0.100 0.900 4 C -0.162 4.162 5 C 0.065 3.935 6 H 0.065 0.935 7 N -0.378 5.378 8 C -0.367 4.367 9 H 0.097 0.903 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.202 1.202 14 H -0.226 1.226 15 H -0.204 1.204 16 C -0.182 4.182 17 C -0.007 4.007 18 N -0.340 5.340 19 C 0.301 3.699 20 O -0.447 6.447 21 C -0.168 4.168 22 C -0.076 4.076 23 C -0.118 4.118 24 C -0.170 4.170 25 C -0.346 4.346 26 S 0.349 5.651 27 C -0.358 4.358 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.172 0.828 44 H 0.202 0.798 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.205 0.097 25.870 26.855 hybrid contribution 0.480 0.847 -1.778 2.027 sum -6.725 0.944 24.092 25.031 Atomic orbital electron populations 1.22029 0.92789 1.02216 1.00998 1.21197 0.95322 0.95416 0.83338 0.90033 1.22148 0.95897 1.00383 0.97782 1.20415 0.92166 0.94712 0.86222 0.93474 1.42660 1.12150 1.54519 1.28426 1.19592 0.90115 1.21004 1.05971 0.90303 1.25550 1.02033 1.00512 0.98940 1.69816 1.37294 1.35245 1.20011 0.85246 0.80261 0.77383 0.77093 1.20207 1.22630 1.20428 1.22452 1.01019 0.99263 0.95472 1.21881 0.78855 1.01515 0.98482 1.48313 1.08150 1.57354 1.20191 1.21118 0.85560 0.79540 0.83674 1.90719 1.18394 1.58104 1.77517 1.21709 1.00229 1.00647 0.94175 1.19928 0.96211 0.99132 0.92350 1.19026 1.02514 0.93273 0.96966 1.20319 1.01899 1.01990 0.92832 1.25914 1.08734 0.94911 1.05083 1.84329 1.62177 1.09121 1.09493 1.25705 1.09371 0.98283 1.02432 0.90994 0.93068 0.93650 0.91463 0.93254 0.79922 0.94190 0.91637 0.93577 0.89777 0.87278 0.88205 0.86777 0.90427 0.91535 0.82754 0.79820 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 7.61 71.98 0.55 -2.86 16 2 C 0.15 4.12 3.49 44.97 0.16 4.28 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -4.04 4.84 30.68 0.15 -3.89 16 5 C 0.17 6.42 2.73 45.02 0.12 6.55 16 6 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 7 N -0.74 -36.30 5.12 -322.80 -1.65 -37.95 16 8 C -0.24 -12.64 9.93 84.03 0.83 -11.81 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 11 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 12 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C -0.14 -4.40 5.66 30.67 0.17 -4.23 16 17 C 0.12 2.53 6.35 86.37 0.55 3.07 16 18 N -0.61 -14.99 2.97 -795.03 -2.36 -17.35 16 19 C 0.51 12.43 7.50 87.66 0.66 13.08 16 20 O -0.57 -16.87 11.55 -3.05 -0.04 -16.90 16 21 C -0.13 -2.21 4.04 29.85 0.12 -2.09 16 22 C -0.04 -0.64 4.76 29.85 0.14 -0.49 16 23 C -0.11 -1.74 5.05 -20.92 -0.11 -1.84 16 24 C -0.14 -2.00 9.98 21.22 0.21 -1.79 16 25 C -0.21 -2.75 11.23 66.72 0.75 -2.00 16 26 S 0.09 1.25 23.34 -56.49 -1.32 -0.07 16 27 C -0.22 -3.68 10.98 66.72 0.73 -2.95 16 28 H 0.07 2.06 6.54 -2.39 -0.02 2.05 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.40 6.95 -2.39 -0.02 1.39 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.37 19.97 7.80 -92.71 -0.72 19.25 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.11 1.77 5.92 -2.39 -0.01 1.76 16 39 H 0.10 1.66 7.93 -2.39 -0.02 1.64 16 40 H 0.11 1.50 7.70 -2.39 -0.02 1.49 16 41 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 42 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -66.26 370.96 2.70 -63.56 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.26 Total: 31.36 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.51 Total: -10.95 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.73 Total: -114.40 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.04 Total: -16.90 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -66.26 2.70 -63.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044629647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.806 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds