Wall clock time and date at job start Tue Mar 31 2020 14:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70157 * 2 1 4 4 C 1.52758 * 109.50905 * 239.87868 * 2 1 3 5 5 C 1.53051 * 109.38253 * 185.70579 * 4 2 1 6 6 H 1.08997 * 109.44686 * 301.23066 * 5 4 2 7 7 N 1.46497 * 109.45596 * 181.26244 * 5 4 2 8 8 C 1.36942 * 119.99672 * 154.93975 * 7 5 4 9 9 H 1.07995 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99987 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99800 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47334 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47163 * 120.00525 * 12 10 8 15 15 H 1.48502 * 109.46988 * 240.00062 * 12 10 8 16 16 C 1.53038 * 109.53247 * 61.24075 * 5 4 2 17 17 C 1.53184 * 109.31642 * 298.63195 * 16 5 4 18 18 N 1.46924 * 109.58642 * 120.35054 * 2 1 3 19 19 C 1.34784 * 120.62905 * 353.42127 * 18 2 1 20 20 O 1.21279 * 119.99801 * 353.91434 * 19 18 2 21 21 C 1.50695 * 119.99927 * 173.91625 * 19 18 2 22 22 C 1.53003 * 109.47259 * 179.97438 * 21 19 18 23 23 C 1.50695 * 109.47259 * 179.97438 * 22 21 19 24 24 C 1.33385 * 125.20307 * 89.72030 * 23 22 21 25 25 C 1.38430 * 114.92304 * 179.85832 * 24 23 22 26 26 C 1.33393 * 114.91578 * 0.43415 * 25 24 23 27 27 S 1.75880 * 109.59767 * 359.76982 * 26 25 24 28 28 H 1.09006 * 109.47051 * 305.45232 * 1 2 3 29 29 H 1.09002 * 109.46883 * 65.44600 * 1 2 3 30 30 H 1.08994 * 109.47422 * 185.45113 * 1 2 3 31 31 H 1.08997 * 109.56307 * 65.67567 * 4 2 1 32 32 H 1.09000 * 109.38868 * 305.63454 * 4 2 1 33 33 H 0.96993 * 120.00215 * 334.92850 * 7 5 4 34 34 H 0.96998 * 120.00173 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.49490 * 178.68144 * 16 5 4 36 36 H 1.09003 * 109.49957 * 58.59072 * 16 5 4 37 37 H 1.08999 * 109.59093 * 294.85590 * 17 16 5 38 38 H 1.09006 * 109.58938 * 174.42360 * 17 16 5 39 39 H 1.09000 * 109.47082 * 59.99669 * 21 19 18 40 40 H 1.09004 * 109.47321 * 300.00120 * 21 19 18 41 41 H 1.08995 * 109.47275 * 300.00303 * 22 21 19 42 42 H 1.09000 * 109.46310 * 60.00229 * 22 21 19 43 43 H 1.07998 * 122.54103 * 0.02562 * 24 23 22 44 44 H 1.07995 * 122.54257 * 180.20200 * 25 24 23 45 45 H 1.08007 * 125.19706 * 179.75049 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7226 -1.2454 5 6 3.5639 -0.8462 -1.1726 6 1 4.0055 0.1476 -1.0994 7 7 4.0577 -1.5122 -2.3804 8 6 5.3420 -1.2971 -2.8043 9 1 5.9905 -0.6362 -2.2484 10 6 5.8102 -1.9285 -3.9484 11 7 5.0199 -2.7343 -4.6255 12 14 7.5618 -1.6345 -4.5270 13 1 8.2384 -0.6936 -3.5986 14 1 8.2985 -2.9237 -4.5500 15 1 7.5407 -1.0520 -5.8928 16 6 3.9522 -1.6686 0.0583 17 6 3.4644 -0.9519 1.3211 18 7 2.0225 -0.6994 1.1945 19 6 1.1672 -1.1068 2.1533 20 8 -0.0048 -0.8016 2.0898 21 6 1.6673 -1.9415 3.3039 22 6 0.5033 -2.2657 4.2426 23 6 1.0033 -3.1009 5.3930 24 6 1.4695 -2.6203 6.5466 25 6 1.8707 -3.5808 7.4591 26 6 1.7387 -4.8413 7.0429 27 16 1.0686 -4.8585 5.4168 28 1 -0.3633 0.5961 0.8372 29 1 -0.3633 0.4271 -0.9348 30 1 -0.3634 -1.0229 0.0976 31 1 1.7632 -0.1566 -2.1349 32 1 1.5963 -1.7170 -1.2941 33 1 3.4752 -2.1056 -2.8797 34 1 5.3471 -3.1758 -5.4248 35 1 5.0363 -1.7761 0.0967 36 1 3.4904 -2.6542 -0.0021 37 1 3.9928 -0.0049 1.4310 38 1 3.6503 -1.5797 2.1926 39 1 2.4306 -1.3872 3.8501 40 1 2.0952 -2.8683 2.9216 41 1 0.0759 -1.3388 4.6249 42 1 -0.2601 -2.8198 3.6966 43 1 1.5269 -1.5620 6.7542 44 1 2.2643 -3.3288 8.4327 45 1 2.0033 -5.7173 7.6166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044851659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:55 Heat of formation + Delta-G solvation = 11.209776 kcal Electronic energy + Delta-G solvation = -24815.916897 eV Core-core repulsion = 21346.354177 eV Total energy + Delta-G solvation = -3469.562719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45825 -38.24721 -37.42751 -34.52878 -34.18660 -32.43638 -31.93569 -29.45718 -28.77144 -26.97885 -25.36268 -24.24946 -22.96141 -22.92773 -21.35441 -20.09348 -19.47351 -18.82278 -17.52363 -17.11895 -16.45824 -16.05870 -15.77716 -15.40891 -14.85089 -14.34822 -14.02923 -13.92789 -13.69525 -13.39252 -13.28166 -13.14753 -12.86782 -12.71457 -12.33083 -12.31701 -12.20482 -11.95165 -11.90154 -11.60568 -11.35931 -11.23961 -10.94106 -10.88441 -10.85389 -10.75969 -10.45183 -10.22966 -9.85932 -9.73984 -9.06864 -8.94117 -8.81025 -8.71110 -8.41144 -7.00554 -5.80296 -3.09610 0.74647 1.39759 1.77739 2.48592 2.68422 3.09020 3.40260 3.45820 3.48231 4.34438 4.54759 4.76833 4.79589 4.83084 4.89765 5.07855 5.15899 5.24206 5.29393 5.32455 5.37120 5.42155 5.49122 5.55811 5.59838 5.63398 5.82046 5.85405 5.90405 5.92091 6.00920 6.05021 6.13607 6.25354 6.25706 6.36494 6.44238 6.47559 6.53779 6.73933 6.89546 7.02973 7.55921 7.66228 8.27703 8.37922 9.49232 10.06716 10.41340 11.42309 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002682 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.696661 B =10435.948689 C =11561.623857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.603 5.603 19 C 0.515 3.485 20 O -0.542 6.542 21 C -0.138 4.138 22 C -0.033 4.033 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.133 4.133 26 C -0.219 4.219 27 S 0.099 5.901 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.027 0.323 22.880 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.087 0.913 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.303 3.697 20 O -0.421 6.421 21 C -0.178 4.178 22 C -0.072 4.072 23 C -0.286 4.286 24 C -0.173 4.173 25 C -0.164 4.164 26 C -0.355 4.355 27 S 0.362 5.638 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.833 -0.605 21.770 23.501 hybrid contribution 1.523 0.772 0.486 1.775 sum -7.310 0.166 22.256 23.426 Atomic orbital electron populations 1.22182 0.92930 1.03364 1.00767 1.21202 0.95358 0.95139 0.83918 0.91278 1.22226 0.97593 1.00997 0.96606 1.20158 0.90935 0.94930 0.87094 0.93483 1.42439 1.12895 1.54643 1.26443 1.19271 0.89064 1.22330 1.06364 0.91128 1.24754 0.98161 0.99862 0.98180 1.69672 1.35262 1.33694 1.19382 0.86139 0.84485 0.77284 0.78404 1.20548 1.21884 1.21876 1.22681 1.01761 1.00047 0.94795 1.21880 0.79563 1.00571 0.99692 1.48247 1.07698 1.57370 1.20304 1.20500 0.85981 0.79943 0.83230 1.90726 1.17301 1.57138 1.76887 1.21760 0.99569 1.01085 0.95407 1.19873 0.96766 0.98969 0.91613 1.24584 1.07319 0.96402 1.00267 1.20150 1.02798 1.01074 0.93311 1.20173 1.03139 0.91880 1.01206 1.25626 1.09165 1.01391 0.99317 1.84460 1.62368 1.03529 1.13416 0.90660 0.93841 0.91952 0.90623 0.91872 0.78267 0.93531 0.90637 0.92180 0.91425 0.90392 0.88773 0.88713 0.89171 0.89929 0.84302 0.84426 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.60 37.16 0.28 -1.64 16 2 C 0.15 2.10 3.47 -67.82 -0.24 1.86 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -2.23 4.81 -26.83 -0.13 -2.36 16 5 C 0.18 3.36 2.73 -67.89 -0.19 3.18 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 7 N -0.72 -17.58 5.12 -53.38 -0.27 -17.85 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.58 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 12 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 C -0.15 -2.46 5.66 -26.62 -0.15 -2.61 16 17 C 0.11 1.32 6.35 -3.71 -0.02 1.29 16 18 N -0.60 -8.05 2.98 -165.48 -0.49 -8.54 16 19 C 0.52 6.73 7.50 -10.98 -0.08 6.65 16 20 O -0.54 -8.29 11.56 5.56 0.06 -8.23 16 21 C -0.14 -1.38 4.04 -27.88 -0.11 -1.49 16 22 C -0.03 -0.32 5.00 -27.88 -0.14 -0.46 16 23 C -0.17 -1.58 5.76 -36.01 -0.21 -1.79 16 24 C -0.14 -1.23 10.05 -41.21 -0.41 -1.64 16 25 C -0.13 -1.06 10.18 -41.20 -0.42 -1.48 16 26 C -0.22 -1.77 11.23 29.04 0.33 -1.44 16 27 S 0.10 0.90 23.33 -107.50 -2.51 -1.60 16 28 H 0.07 1.11 6.53 -51.93 -0.34 0.77 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.97 6.97 -51.93 -0.36 0.61 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 40 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 41 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.16 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -30.63 371.18 -10.83 -41.45 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.17 Total: 8.28 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.74 Total: -8.98 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.04 Total: -53.49 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.06 Total: -8.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.63 -10.83 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.664 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds