Wall clock time and date at job start Tue Mar 31 2020 14:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70157 * 2 1 4 4 C 1.52758 * 109.50905 * 239.87868 * 2 1 3 5 5 C 1.53051 * 109.38253 * 185.70579 * 4 2 1 6 6 H 1.08997 * 109.44686 * 301.23066 * 5 4 2 7 7 N 1.46497 * 109.45596 * 181.26244 * 5 4 2 8 8 C 1.36942 * 119.99672 * 154.93975 * 7 5 4 9 9 H 1.07995 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99987 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99800 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47334 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47163 * 120.00525 * 12 10 8 15 15 H 1.48502 * 109.46988 * 240.00062 * 12 10 8 16 16 C 1.53038 * 109.53247 * 61.24075 * 5 4 2 17 17 C 1.53184 * 109.31642 * 298.63195 * 16 5 4 18 18 N 1.46924 * 109.58642 * 120.35054 * 2 1 3 19 19 C 1.34784 * 120.62905 * 353.42127 * 18 2 1 20 20 O 1.21279 * 119.99801 * 353.91434 * 19 18 2 21 21 C 1.50695 * 119.99927 * 173.91625 * 19 18 2 22 22 C 1.53003 * 109.47259 * 179.97438 * 21 19 18 23 23 C 1.50695 * 109.47259 * 179.97438 * 22 21 19 24 24 C 1.33385 * 125.20307 * 89.72030 * 23 22 21 25 25 C 1.38430 * 114.92304 * 179.85832 * 24 23 22 26 26 C 1.33393 * 114.91578 * 0.43415 * 25 24 23 27 27 S 1.75880 * 109.59767 * 359.76982 * 26 25 24 28 28 H 1.09006 * 109.47051 * 305.45232 * 1 2 3 29 29 H 1.09002 * 109.46883 * 65.44600 * 1 2 3 30 30 H 1.08994 * 109.47422 * 185.45113 * 1 2 3 31 31 H 1.08997 * 109.56307 * 65.67567 * 4 2 1 32 32 H 1.09000 * 109.38868 * 305.63454 * 4 2 1 33 33 H 0.96993 * 120.00215 * 334.92850 * 7 5 4 34 34 H 0.96998 * 120.00173 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.49490 * 178.68144 * 16 5 4 36 36 H 1.09003 * 109.49957 * 58.59072 * 16 5 4 37 37 H 1.08999 * 109.59093 * 294.85590 * 17 16 5 38 38 H 1.09006 * 109.58938 * 174.42360 * 17 16 5 39 39 H 1.09000 * 109.47082 * 59.99669 * 21 19 18 40 40 H 1.09004 * 109.47321 * 300.00120 * 21 19 18 41 41 H 1.08995 * 109.47275 * 300.00303 * 22 21 19 42 42 H 1.09000 * 109.46310 * 60.00229 * 22 21 19 43 43 H 1.07998 * 122.54103 * 0.02562 * 24 23 22 44 44 H 1.07995 * 122.54257 * 180.20200 * 25 24 23 45 45 H 1.08007 * 125.19706 * 179.75049 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7226 -1.2454 5 6 3.5639 -0.8462 -1.1726 6 1 4.0055 0.1476 -1.0994 7 7 4.0577 -1.5122 -2.3804 8 6 5.3420 -1.2971 -2.8043 9 1 5.9905 -0.6362 -2.2484 10 6 5.8102 -1.9285 -3.9484 11 7 5.0199 -2.7343 -4.6255 12 14 7.5618 -1.6345 -4.5270 13 1 8.2384 -0.6936 -3.5986 14 1 8.2985 -2.9237 -4.5500 15 1 7.5407 -1.0520 -5.8928 16 6 3.9522 -1.6686 0.0583 17 6 3.4644 -0.9519 1.3211 18 7 2.0225 -0.6994 1.1945 19 6 1.1672 -1.1068 2.1533 20 8 -0.0048 -0.8016 2.0898 21 6 1.6673 -1.9415 3.3039 22 6 0.5033 -2.2657 4.2426 23 6 1.0033 -3.1009 5.3930 24 6 1.4695 -2.6203 6.5466 25 6 1.8707 -3.5808 7.4591 26 6 1.7387 -4.8413 7.0429 27 16 1.0686 -4.8585 5.4168 28 1 -0.3633 0.5961 0.8372 29 1 -0.3633 0.4271 -0.9348 30 1 -0.3634 -1.0229 0.0976 31 1 1.7632 -0.1566 -2.1349 32 1 1.5963 -1.7170 -1.2941 33 1 3.4752 -2.1056 -2.8797 34 1 5.3471 -3.1758 -5.4248 35 1 5.0363 -1.7761 0.0967 36 1 3.4904 -2.6542 -0.0021 37 1 3.9928 -0.0049 1.4310 38 1 3.6503 -1.5797 2.1926 39 1 2.4306 -1.3872 3.8501 40 1 2.0952 -2.8683 2.9216 41 1 0.0759 -1.3388 4.6249 42 1 -0.2601 -2.8198 3.6966 43 1 1.5269 -1.5620 6.7542 44 1 2.2643 -3.3288 8.4327 45 1 2.0033 -5.7173 7.6166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044851659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:54 Heat of formation + Delta-G solvation = -5.335918 kcal Electronic energy + Delta-G solvation = -24816.634372 eV Core-core repulsion = 21346.354177 eV Total energy + Delta-G solvation = -3470.280194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56227 -39.04604 -38.56468 -36.17073 -35.06544 -33.78245 -33.42534 -31.03751 -29.66077 -28.27495 -26.26072 -25.83243 -24.39909 -23.75589 -22.46735 -21.50769 -20.09586 -19.97543 -19.08502 -18.29818 -17.37215 -17.14346 -16.72898 -16.64840 -16.20914 -15.56942 -15.44689 -15.24213 -15.03011 -14.62906 -14.54237 -13.99919 -13.93206 -13.58478 -13.42826 -13.34839 -13.11836 -13.05775 -12.91604 -12.86848 -12.80393 -12.62980 -12.56142 -12.10909 -12.01304 -11.98769 -11.90304 -11.69918 -11.55310 -11.34642 -10.89687 -10.10583 -9.55905 -9.51603 -9.38702 -9.00425 -7.92969 -5.21703 0.10783 0.74815 1.14934 1.48565 1.48940 1.58811 1.65577 1.86117 2.06618 2.57050 3.40350 3.46266 3.75204 3.84647 3.97687 4.06518 4.09278 4.10497 4.20470 4.28177 4.31669 4.36998 4.54134 4.60574 4.63507 4.67946 4.72975 4.75085 4.82901 4.86771 4.91500 5.02490 5.07940 5.10226 5.17564 5.28227 5.29790 5.42129 5.43229 5.51425 5.55836 5.64559 5.72866 6.28845 6.50792 7.23517 7.34736 8.10569 8.33387 9.30971 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002682 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.696661 B =10435.948689 C =11561.623857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.173 3.827 6 H 0.048 0.952 7 N -0.739 5.739 8 C -0.232 4.232 9 H 0.080 0.920 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.262 1.262 14 H -0.296 1.296 15 H -0.297 1.297 16 C -0.142 4.142 17 C 0.115 3.885 18 N -0.606 5.606 19 C 0.512 3.488 20 O -0.566 6.566 21 C -0.130 4.130 22 C -0.025 4.025 23 C -0.181 4.181 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.217 4.217 27 S 0.066 5.934 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 1.386 25.537 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.065 3.935 6 H 0.066 0.934 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.098 0.902 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.225 1.225 16 C -0.183 4.183 17 C -0.008 4.008 18 N -0.339 5.339 19 C 0.302 3.698 20 O -0.446 6.446 21 C -0.170 4.170 22 C -0.065 4.065 23 C -0.298 4.298 24 C -0.171 4.171 25 C -0.170 4.170 26 C -0.352 4.352 27 S 0.329 5.671 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.747 0.489 24.490 25.691 hybrid contribution 1.114 0.460 -0.254 1.232 sum -6.633 0.949 24.236 25.145 Atomic orbital electron populations 1.22039 0.92796 1.02192 1.01071 1.21109 0.95334 0.95479 0.83309 0.89954 1.22078 0.95945 1.00437 0.97802 1.20415 0.92179 0.94739 0.86171 0.93381 1.42678 1.12099 1.54817 1.28171 1.19665 0.90013 1.20953 1.05739 0.90236 1.25555 1.02012 1.00596 0.98974 1.69832 1.37092 1.35507 1.19962 0.85108 0.80157 0.77045 0.77693 1.18658 1.22343 1.22465 1.22458 1.01091 0.99249 0.95472 1.21896 0.78847 1.01546 0.98481 1.48305 1.08218 1.57356 1.20045 1.21019 0.85553 0.79571 0.83639 1.90720 1.18397 1.57959 1.77561 1.21749 1.00108 1.00787 0.94318 1.19740 0.96307 0.98797 0.91640 1.24521 1.08612 0.96076 1.00619 1.20432 1.01697 1.02116 0.92870 1.20473 1.02866 0.91603 1.02061 1.25919 1.08491 1.02395 0.98434 1.84582 1.63236 1.04187 1.15082 0.90926 0.93006 0.93727 0.91357 0.93314 0.79924 0.94214 0.91550 0.93627 0.89616 0.87338 0.86370 0.88356 0.89182 0.91534 0.82742 0.82178 0.80141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 7.60 71.98 0.55 -2.88 16 2 C 0.15 4.12 3.47 44.83 0.16 4.28 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -4.05 4.81 30.53 0.15 -3.91 16 5 C 0.17 6.41 2.73 45.02 0.12 6.54 16 6 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 7 N -0.74 -36.27 5.12 -322.81 -1.65 -37.92 16 8 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -59.45 13.06 21.65 0.28 -59.16 16 12 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 C -0.14 -4.42 5.66 30.67 0.17 -4.25 16 17 C 0.11 2.51 6.35 86.36 0.55 3.06 16 18 N -0.61 -14.97 2.98 -795.84 -2.37 -17.34 16 19 C 0.51 12.50 7.50 87.65 0.66 13.16 16 20 O -0.57 -16.83 11.56 -3.03 -0.03 -16.86 16 21 C -0.13 -2.29 4.04 29.85 0.12 -2.17 16 22 C -0.03 -0.46 5.00 29.85 0.15 -0.31 16 23 C -0.18 -3.10 5.76 24.59 0.14 -2.96 16 24 C -0.14 -2.06 10.05 21.22 0.21 -1.84 16 25 C -0.14 -1.84 10.18 21.22 0.22 -1.62 16 26 C -0.22 -3.03 11.23 66.72 0.75 -2.28 16 27 S 0.07 1.15 23.33 -56.49 -1.32 -0.17 16 28 H 0.07 2.07 6.53 -2.38 -0.02 2.06 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.38 6.97 -2.39 -0.02 1.37 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.37 19.98 7.80 -92.71 -0.72 19.25 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.77 5.93 -2.38 -0.01 1.76 16 39 H 0.12 1.55 7.70 -2.39 -0.02 1.53 16 40 H 0.10 1.72 7.93 -2.38 -0.02 1.70 16 41 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 43 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -66.64 371.18 2.43 -64.21 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.26 Total: 30.63 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.24 Total: -10.84 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.74 Total: -114.43 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.03 Total: -16.86 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.32 Total: -0.17 kcal Total: -66.64 2.43 -64.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.873 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds