Wall clock time and date at job start Tue Mar 31 2020 14:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.69861 * 2 1 4 4 C 1.53163 * 109.59308 * 239.63450 * 2 1 3 5 5 C 1.53040 * 109.32621 * 185.56941 * 4 2 1 6 6 H 1.09006 * 109.45980 * 181.38847 * 5 4 2 7 7 N 1.46501 * 109.46400 * 301.35544 * 5 4 2 8 8 C 1.36927 * 120.00481 * 205.02698 * 7 5 4 9 9 H 1.08004 * 119.99701 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00350 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00018 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47079 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47299 * 59.99489 * 12 10 8 15 15 H 1.48503 * 109.46614 * 299.99788 * 12 10 8 16 16 C 1.53042 * 109.52913 * 61.37323 * 5 4 2 17 17 C 1.53191 * 109.31085 * 298.64071 * 16 5 4 18 18 N 1.46923 * 108.77665 * 54.63461 * 17 16 5 19 19 C 1.34772 * 120.63128 * 126.36776 * 18 17 16 20 20 O 1.21290 * 119.99931 * 174.21089 * 19 18 17 21 21 C 1.50701 * 120.00339 * 354.21560 * 19 18 17 22 22 C 1.52994 * 109.47295 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.47295 * 180.02562 * 22 21 19 24 24 C 1.33389 * 125.20245 * 89.99373 * 23 22 21 25 25 C 1.38430 * 114.91802 * 179.97438 * 24 23 22 26 26 C 1.33384 * 114.92235 * 0.02562 * 25 24 23 27 27 S 1.75885 * 125.20250 * 269.70080 * 23 22 21 28 28 H 1.08996 * 109.47136 * 305.43395 * 1 2 3 29 29 H 1.09004 * 109.46970 * 65.44002 * 1 2 3 30 30 H 1.08999 * 109.46511 * 185.43049 * 1 2 3 31 31 H 1.08998 * 109.48082 * 65.62186 * 4 2 1 32 32 H 1.08998 * 109.50188 * 305.52976 * 4 2 1 33 33 H 0.97007 * 119.99430 * 25.03099 * 7 5 4 34 34 H 0.97003 * 119.99700 * 359.97438 * 11 10 8 35 35 H 1.08997 * 109.49393 * 58.59027 * 16 5 4 36 36 H 1.08995 * 109.50062 * 178.65562 * 16 5 4 37 37 H 1.08999 * 109.58341 * 174.42161 * 17 16 5 38 38 H 1.09004 * 109.58597 * 294.70593 * 17 16 5 39 39 H 1.09001 * 109.46933 * 299.99952 * 21 19 18 40 40 H 1.09002 * 109.46722 * 59.99356 * 21 19 18 41 41 H 1.09001 * 109.47268 * 299.99963 * 22 21 19 42 42 H 1.09002 * 109.47584 * 60.00101 * 22 21 19 43 43 H 1.07995 * 122.54149 * 359.96543 * 24 23 22 44 44 H 1.08001 * 122.53774 * 180.02562 * 25 24 23 45 45 H 1.08000 * 125.20467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2450 5 6 3.5676 -0.8479 -1.1700 6 1 3.9378 -1.3449 -2.0667 7 7 4.1571 0.4899 -1.0749 8 6 5.4411 0.7041 -1.4996 9 1 6.0192 -0.1132 -1.9051 10 6 5.9999 1.9715 -1.4090 11 7 5.2953 2.9675 -0.9153 12 14 7.7513 2.2638 -1.9891 13 1 8.1080 3.6911 -1.7868 14 1 7.8578 1.9270 -3.4314 15 1 8.6802 1.4057 -1.2105 16 6 3.9570 -1.6656 0.0637 17 6 3.4651 -0.9468 1.3239 18 7 2.0226 -0.6994 1.1946 19 6 1.1674 -1.1068 2.1532 20 8 -0.0057 -0.8058 2.0872 21 6 1.6686 -1.9364 3.3073 22 6 0.5044 -2.2616 4.2451 23 6 1.0058 -3.0906 5.3995 24 6 1.4633 -2.6039 6.5541 25 6 1.8702 -3.5595 7.4694 26 6 1.7435 -4.8219 7.0578 27 16 1.0703 -4.8479 5.4331 28 1 -0.3633 0.5958 0.8373 29 1 -0.3633 0.4272 -0.9347 30 1 -0.3632 -1.0231 0.0973 31 1 1.7659 -0.1669 -2.1363 32 1 1.6031 -1.7254 -1.2908 33 1 3.6378 1.2239 -0.7110 34 1 4.3854 2.8160 -0.6152 35 1 3.4984 -2.6527 0.0055 36 1 5.0412 -1.7699 0.1036 37 1 3.6519 -1.5715 2.1973 38 1 3.9921 0.0011 1.4331 39 1 2.1002 -2.8628 2.9283 40 1 2.4292 -1.3778 3.8528 41 1 0.0733 -1.3349 4.6240 42 1 -0.2565 -2.8200 3.6998 43 1 1.5127 -1.5448 6.7593 44 1 2.2605 -3.3022 8.4430 45 1 2.0097 -5.6947 7.6355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044851661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:59 Heat of formation + Delta-G solvation = 14.560169 kcal Electronic energy + Delta-G solvation = -25296.310129 eV Core-core repulsion = 21826.892694 eV Total energy + Delta-G solvation = -3469.417435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41484 -38.24763 -37.53880 -34.43797 -34.12639 -32.39580 -32.04596 -29.13926 -28.63574 -26.97061 -25.33121 -24.00672 -23.43440 -22.90743 -21.53641 -19.93044 -19.44789 -18.42356 -17.46065 -17.26315 -16.38573 -16.03122 -15.72634 -15.44698 -14.91601 -14.26141 -14.13558 -13.96859 -13.66100 -13.39395 -13.33133 -13.16478 -12.91263 -12.81292 -12.30047 -12.26968 -12.12143 -12.00083 -11.86454 -11.57057 -11.28755 -11.20837 -10.87701 -10.85636 -10.70830 -10.57544 -10.37069 -10.19485 -9.98795 -9.20061 -9.01888 -8.96258 -8.75884 -8.69503 -8.22948 -7.08511 -6.13444 -3.14165 0.76515 1.40913 1.78402 2.51601 2.77737 3.19894 3.48990 3.51940 3.69691 4.40914 4.63873 4.81351 4.81832 4.89062 4.95397 5.15255 5.20440 5.28034 5.32698 5.35355 5.41945 5.47338 5.58257 5.62660 5.63805 5.66290 5.78936 5.89450 5.92649 5.95105 6.03506 6.07326 6.09148 6.20016 6.27946 6.34858 6.40875 6.52136 6.64551 6.66980 6.73314 6.98779 7.69087 7.77294 8.37290 8.71369 9.17931 10.04400 10.19682 11.34282 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002919 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.370724 B = 9590.142341 C =10455.973979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.078 2.922 13 H -0.285 1.285 14 H -0.296 1.296 15 H -0.296 1.296 16 C -0.149 4.149 17 C 0.114 3.886 18 N -0.599 5.599 19 C 0.513 3.487 20 O -0.545 6.545 21 C -0.136 4.136 22 C -0.032 4.032 23 C -0.167 4.167 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.220 4.220 27 S 0.093 5.907 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.366 0.634 34 H 0.254 0.746 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 -14.892 13.002 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.091 0.909 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.909 3.091 13 H -0.211 1.211 14 H -0.223 1.223 15 H -0.223 1.223 16 C -0.190 4.190 17 C -0.009 4.009 18 N -0.331 5.331 19 C 0.302 3.698 20 O -0.424 6.424 21 C -0.177 4.177 22 C -0.072 4.072 23 C -0.284 4.284 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.355 4.355 27 S 0.356 5.644 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.111 -14.887 11.674 20.584 hybrid contribution -0.588 -0.029 1.323 1.448 sum -8.699 -14.916 12.997 21.612 Atomic orbital electron populations 1.22184 0.93094 1.03053 1.00803 1.21212 0.94922 0.95718 0.83836 0.90855 1.22257 0.97411 1.00342 0.97339 1.20122 0.90241 0.87675 0.95064 0.93074 1.42514 1.14065 1.04791 1.76317 1.20023 0.90489 0.97009 1.38631 0.91799 1.25730 1.06067 0.91566 1.00825 1.70898 1.10939 1.32359 1.44615 0.83259 0.74391 0.75918 0.75500 1.21098 1.22334 1.22301 1.22493 1.01497 0.97940 0.97068 1.21718 0.79205 1.01624 0.98310 1.48200 1.07777 1.56958 1.20204 1.20489 0.86017 0.80079 0.83265 1.90719 1.17300 1.57449 1.76959 1.21741 0.99552 1.00968 0.95442 1.19875 0.96720 0.99051 0.91539 1.24583 1.07326 0.96243 1.00241 1.20182 1.02670 1.01203 0.93211 1.20187 1.02932 0.91900 1.01213 1.25598 1.09255 1.01326 0.99317 1.84352 1.62562 1.03766 1.13707 0.90557 0.94040 0.92139 0.90857 0.91982 0.79908 0.93491 0.93191 0.90764 0.90970 0.90082 0.88951 0.88726 0.89126 0.90007 0.84204 0.84368 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 7.61 37.16 0.28 -1.81 16 2 C 0.15 2.42 3.19 -67.61 -0.22 2.20 16 3 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 4 C -0.13 -2.21 5.07 -26.63 -0.13 -2.35 16 5 C 0.18 3.38 3.10 -67.89 -0.21 3.17 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.73 -17.15 4.31 -53.38 -0.23 -17.38 16 8 C -0.33 -8.83 9.93 -15.07 -0.15 -8.98 16 9 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 10 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 11 N -0.94 -28.39 13.70 55.49 0.76 -27.63 16 12 Si 1.08 25.28 29.92 -169.99 -5.09 20.19 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 17 C 0.11 1.76 6.09 -3.71 -0.02 1.74 16 18 N -0.60 -9.27 2.97 -165.23 -0.49 -9.76 16 19 C 0.51 7.51 7.50 -10.99 -0.08 7.43 16 20 O -0.54 -9.08 11.55 5.55 0.06 -9.01 16 21 C -0.14 -1.54 4.04 -27.89 -0.11 -1.65 16 22 C -0.03 -0.34 5.00 -27.89 -0.14 -0.48 16 23 C -0.17 -1.68 5.76 -36.00 -0.21 -1.88 16 24 C -0.14 -1.35 10.05 -41.21 -0.41 -1.77 16 25 C -0.13 -1.13 10.18 -41.21 -0.42 -1.55 16 26 C -0.22 -1.84 11.23 29.04 0.33 -1.51 16 27 S 0.09 0.86 23.33 -107.50 -2.51 -1.64 16 28 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.97 6.96 -51.93 -0.36 0.61 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.37 8.96 4.90 -40.82 -0.20 8.76 16 34 H 0.25 7.54 6.77 -40.82 -0.28 7.27 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 38 H 0.08 1.50 7.74 -51.93 -0.40 1.09 16 39 H 0.09 0.97 7.93 -51.93 -0.41 0.55 16 40 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 41 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -30.56 365.22 -10.63 -41.19 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.89 Total: 9.91 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.75 Total: -11.37 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.04 Total: -54.76 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.06 Total: -9.01 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.19 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.56 -10.63 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.753 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds