Wall clock time and date at job start Tue Mar 31 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.69861 * 2 1 4 4 C 1.53163 * 109.59308 * 239.63450 * 2 1 3 5 5 C 1.53040 * 109.32621 * 185.56941 * 4 2 1 6 6 H 1.09006 * 109.45980 * 181.38847 * 5 4 2 7 7 N 1.46501 * 109.46400 * 301.35544 * 5 4 2 8 8 C 1.36927 * 120.00481 * 205.02698 * 7 5 4 9 9 H 1.08004 * 119.99701 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00350 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00018 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47079 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47299 * 59.99489 * 12 10 8 15 15 H 1.48503 * 109.46614 * 299.99788 * 12 10 8 16 16 C 1.53042 * 109.52913 * 61.37323 * 5 4 2 17 17 C 1.53191 * 109.31085 * 298.64071 * 16 5 4 18 18 N 1.46923 * 108.77665 * 54.63461 * 17 16 5 19 19 C 1.34772 * 120.63128 * 126.36776 * 18 17 16 20 20 O 1.21290 * 119.99931 * 174.21089 * 19 18 17 21 21 C 1.50701 * 120.00339 * 354.21560 * 19 18 17 22 22 C 1.52994 * 109.47295 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.47295 * 180.02562 * 22 21 19 24 24 C 1.33389 * 125.20245 * 89.99373 * 23 22 21 25 25 C 1.38430 * 114.91802 * 179.97438 * 24 23 22 26 26 C 1.33384 * 114.92235 * 0.02562 * 25 24 23 27 27 S 1.75885 * 125.20250 * 269.70080 * 23 22 21 28 28 H 1.08996 * 109.47136 * 305.43395 * 1 2 3 29 29 H 1.09004 * 109.46970 * 65.44002 * 1 2 3 30 30 H 1.08999 * 109.46511 * 185.43049 * 1 2 3 31 31 H 1.08998 * 109.48082 * 65.62186 * 4 2 1 32 32 H 1.08998 * 109.50188 * 305.52976 * 4 2 1 33 33 H 0.97007 * 119.99430 * 25.03099 * 7 5 4 34 34 H 0.97003 * 119.99700 * 359.97438 * 11 10 8 35 35 H 1.08997 * 109.49393 * 58.59027 * 16 5 4 36 36 H 1.08995 * 109.50062 * 178.65562 * 16 5 4 37 37 H 1.08999 * 109.58341 * 174.42161 * 17 16 5 38 38 H 1.09004 * 109.58597 * 294.70593 * 17 16 5 39 39 H 1.09001 * 109.46933 * 299.99952 * 21 19 18 40 40 H 1.09002 * 109.46722 * 59.99356 * 21 19 18 41 41 H 1.09001 * 109.47268 * 299.99963 * 22 21 19 42 42 H 1.09002 * 109.47584 * 60.00101 * 22 21 19 43 43 H 1.07995 * 122.54149 * 359.96543 * 24 23 22 44 44 H 1.08001 * 122.53774 * 180.02562 * 25 24 23 45 45 H 1.08000 * 125.20467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2450 5 6 3.5676 -0.8479 -1.1700 6 1 3.9378 -1.3449 -2.0667 7 7 4.1571 0.4899 -1.0749 8 6 5.4411 0.7041 -1.4996 9 1 6.0192 -0.1132 -1.9051 10 6 5.9999 1.9715 -1.4090 11 7 5.2953 2.9675 -0.9153 12 14 7.7513 2.2638 -1.9891 13 1 8.1080 3.6911 -1.7868 14 1 7.8578 1.9270 -3.4314 15 1 8.6802 1.4057 -1.2105 16 6 3.9570 -1.6656 0.0637 17 6 3.4651 -0.9468 1.3239 18 7 2.0226 -0.6994 1.1946 19 6 1.1674 -1.1068 2.1532 20 8 -0.0057 -0.8058 2.0872 21 6 1.6686 -1.9364 3.3073 22 6 0.5044 -2.2616 4.2451 23 6 1.0058 -3.0906 5.3995 24 6 1.4633 -2.6039 6.5541 25 6 1.8702 -3.5595 7.4694 26 6 1.7435 -4.8219 7.0578 27 16 1.0703 -4.8479 5.4331 28 1 -0.3633 0.5958 0.8373 29 1 -0.3633 0.4272 -0.9347 30 1 -0.3632 -1.0231 0.0973 31 1 1.7659 -0.1669 -2.1363 32 1 1.6031 -1.7254 -1.2908 33 1 3.6378 1.2239 -0.7110 34 1 4.3854 2.8160 -0.6152 35 1 3.4984 -2.6527 0.0055 36 1 5.0412 -1.7699 0.1036 37 1 3.6519 -1.5715 2.1973 38 1 3.9921 0.0011 1.4331 39 1 2.1002 -2.8628 2.9283 40 1 2.4292 -1.3778 3.8528 41 1 0.0733 -1.3349 4.6240 42 1 -0.2565 -2.8200 3.6998 43 1 1.5127 -1.5448 6.7593 44 1 2.2605 -3.3022 8.4430 45 1 2.0097 -5.6947 7.6355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044851661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:58 Heat of formation + Delta-G solvation = -1.399858 kcal Electronic energy + Delta-G solvation = -25297.002208 eV Core-core repulsion = 21826.892694 eV Total energy + Delta-G solvation = -3470.109514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67006 -39.20423 -38.66803 -36.14315 -35.10902 -33.87569 -33.46541 -30.67437 -29.70172 -28.32119 -26.22640 -25.55593 -25.20962 -23.78841 -22.72433 -21.27507 -20.12732 -19.83645 -19.16880 -18.32193 -17.41944 -17.29914 -16.91984 -16.57363 -16.18336 -15.83582 -15.46104 -15.28101 -15.16124 -14.74930 -14.55611 -14.15149 -14.03858 -13.61631 -13.42019 -13.40742 -13.22250 -13.08760 -12.92862 -12.89357 -12.67437 -12.61019 -12.24262 -12.07386 -11.99864 -11.93769 -11.81834 -11.65405 -11.58846 -11.16183 -10.89198 -10.14071 -9.57301 -9.54617 -9.38411 -9.06718 -8.33390 -5.27237 0.08062 0.72776 1.11651 1.60122 1.60859 1.69315 1.82261 1.85251 2.01115 2.73958 3.40620 3.44711 3.71442 3.80656 3.90830 3.94545 3.99902 4.05652 4.13397 4.22329 4.28122 4.29180 4.42112 4.49039 4.59179 4.62914 4.69709 4.72692 4.79424 4.83746 4.87904 4.98130 5.03326 5.05770 5.17602 5.19964 5.25615 5.26430 5.34268 5.41298 5.60925 5.66191 5.67156 6.47808 6.53535 7.13703 7.17697 8.04612 8.16826 9.17905 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002919 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.370724 B = 9590.142341 C =10455.973979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.146 3.854 3 H 0.044 0.956 4 C -0.123 4.123 5 C 0.171 3.829 6 H 0.044 0.956 7 N -0.743 5.743 8 C -0.320 4.320 9 H 0.067 0.933 10 C -0.106 4.106 11 N -0.978 5.978 12 Si 1.124 2.876 13 H -0.298 1.298 14 H -0.281 1.281 15 H -0.277 1.277 16 C -0.140 4.140 17 C 0.121 3.879 18 N -0.601 5.601 19 C 0.511 3.489 20 O -0.566 6.566 21 C -0.128 4.128 22 C -0.024 4.024 23 C -0.183 4.183 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.215 4.215 27 S 0.084 5.916 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.359 0.641 34 H 0.241 0.759 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.158 0.842 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 -17.239 13.966 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.043 3.957 3 H 0.062 0.938 4 C -0.162 4.162 5 C 0.062 3.938 6 H 0.062 0.938 7 N -0.386 5.386 8 C -0.452 4.452 9 H 0.085 0.915 10 C -0.297 4.297 11 N -0.627 5.627 12 Si 0.950 3.050 13 H -0.225 1.225 14 H -0.207 1.207 15 H -0.203 1.203 16 C -0.181 4.181 17 C -0.001 4.001 18 N -0.334 5.334 19 C 0.301 3.699 20 O -0.446 6.446 21 C -0.168 4.168 22 C -0.064 4.064 23 C -0.300 4.300 24 C -0.176 4.176 25 C -0.173 4.173 26 C -0.351 4.351 27 S 0.347 5.653 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.192 0.808 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.165 0.835 44 H 0.176 0.824 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.682 -17.303 12.640 22.763 hybrid contribution -0.803 0.625 1.057 1.467 sum -8.485 -16.678 13.697 23.190 Atomic orbital electron populations 1.22022 0.92169 1.02761 1.00746 1.21085 0.95465 0.94463 0.84698 0.93823 1.22132 0.95642 1.01418 0.96963 1.20375 0.91592 0.85773 0.96032 0.93780 1.42673 1.13235 1.06485 1.76194 1.20342 0.91595 0.96758 1.36468 0.91482 1.27030 1.09216 0.91869 1.01571 1.71006 1.10814 1.33444 1.47440 0.82654 0.70966 0.75287 0.76086 1.22466 1.20744 1.20259 1.22349 1.01052 0.98847 0.95807 1.21623 0.78773 1.00356 0.99386 1.48222 1.07906 1.57049 1.20192 1.21069 0.85599 0.79761 0.83472 1.90716 1.18304 1.58203 1.77420 1.21728 0.99971 1.00960 0.94111 1.19725 0.96246 0.98764 0.91627 1.24509 1.08567 0.96626 1.00337 1.20424 1.02030 1.01950 0.93174 1.20438 1.03059 0.91779 1.01982 1.25936 1.08221 1.02169 0.98739 1.84365 1.62887 1.03259 1.14787 0.91982 0.93023 0.92105 0.91490 0.89688 0.80838 0.94823 0.90183 0.91831 0.87464 0.93638 0.87351 0.87644 0.89918 0.90736 0.83519 0.82416 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 7.61 71.98 0.55 -3.15 16 2 C 0.15 4.85 3.19 44.96 0.14 4.99 16 3 H 0.04 1.71 6.64 -2.39 -0.02 1.69 16 4 C -0.12 -3.92 5.07 30.66 0.16 -3.77 16 5 C 0.17 6.31 3.10 45.02 0.14 6.45 16 6 H 0.04 1.69 8.08 -2.38 -0.02 1.68 16 7 N -0.74 -35.24 4.31 -322.81 -1.39 -36.63 16 8 C -0.32 -17.16 9.93 84.03 0.83 -16.33 16 9 H 0.07 3.50 7.83 -2.91 -0.02 3.47 16 10 C -0.11 -5.99 5.50 84.86 0.47 -5.53 16 11 N -0.98 -60.51 13.70 21.65 0.30 -60.21 16 12 Si 1.12 51.05 29.92 68.60 2.05 53.10 16 13 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 16 C -0.14 -4.32 5.78 30.67 0.18 -4.14 16 17 C 0.12 3.59 6.09 86.36 0.53 4.11 16 18 N -0.60 -18.06 2.97 -795.07 -2.36 -20.43 16 19 C 0.51 14.30 7.50 87.66 0.66 14.96 16 20 O -0.57 -18.49 11.55 -3.06 -0.04 -18.53 16 21 C -0.13 -2.61 4.04 29.85 0.12 -2.49 16 22 C -0.02 -0.48 5.00 29.85 0.15 -0.33 16 23 C -0.18 -3.37 5.76 24.59 0.14 -3.23 16 24 C -0.15 -2.48 10.05 21.22 0.21 -2.26 16 25 C -0.14 -2.09 10.18 21.22 0.22 -1.88 16 26 C -0.22 -3.05 11.23 66.72 0.75 -2.30 16 27 S 0.08 1.40 23.33 -56.49 -1.32 0.08 16 28 H 0.06 2.10 6.54 -2.39 -0.02 2.08 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.87 6.96 -2.39 -0.02 1.86 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.36 18.19 4.90 -92.70 -0.45 17.74 16 34 H 0.24 14.96 6.77 -92.71 -0.63 14.33 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.11 2.41 5.93 -2.39 -0.01 2.40 16 38 H 0.05 1.69 7.74 -2.39 -0.02 1.68 16 39 H 0.11 1.92 7.93 -2.39 -0.02 1.90 16 40 H 0.11 1.97 7.71 -2.39 -0.02 1.95 16 41 H 0.08 1.76 8.10 -2.39 -0.02 1.75 16 42 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 43 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 45 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -66.53 365.22 3.15 -63.37 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.67 Total: 34.13 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.24 Total: -14.88 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.46 Total: -117.27 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.04 Total: -18.53 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.32 Total: 0.08 kcal Total: -66.53 3.15 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.973 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds