Wall clock time and date at job start Tue Mar 31 2020 14:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.70413 * 2 1 4 4 C 1.52767 * 109.43015 * 120.16048 * 2 1 3 5 5 C 1.53041 * 109.38243 * 65.42315 * 4 2 1 6 6 H 1.09007 * 109.45951 * 301.21789 * 5 4 2 7 7 N 1.46502 * 109.45704 * 181.26241 * 5 4 2 8 8 C 1.36941 * 119.99828 * 154.93358 * 7 5 4 9 9 H 1.07999 * 120.00076 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99781 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00119 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46900 * 60.00677 * 12 10 8 14 14 H 1.48505 * 109.47255 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47337 * 300.00558 * 12 10 8 16 16 C 1.53033 * 109.53746 * 61.24118 * 5 4 2 17 17 C 1.53193 * 109.31596 * 298.63291 * 16 5 4 18 18 N 1.46919 * 109.58676 * 239.63760 * 2 1 3 19 19 C 1.34784 * 120.62757 * 113.84781 * 18 2 1 20 20 O 1.21281 * 120.00093 * 359.71898 * 19 18 2 21 21 C 1.50696 * 119.99865 * 179.72161 * 19 18 2 22 22 C 1.53000 * 109.47110 * 179.97438 * 21 19 18 23 23 C 1.50706 * 109.47116 * 179.97438 * 22 21 19 24 24 C 1.33391 * 125.19937 * 90.00083 * 23 22 21 25 25 C 1.38423 * 114.92045 * 179.97438 * 24 23 22 26 26 C 1.33390 * 114.91979 * 359.97438 * 25 24 23 27 27 S 1.75878 * 125.20693 * 269.69344 * 23 22 21 28 28 H 1.08999 * 109.47368 * 180.35839 * 1 2 3 29 29 H 1.09004 * 109.47274 * 300.35975 * 1 2 3 30 30 H 1.09000 * 109.46981 * 60.35692 * 1 2 3 31 31 H 1.09003 * 109.56024 * 305.38996 * 4 2 1 32 32 H 1.08996 * 109.35745 * 185.33599 * 4 2 1 33 33 H 0.96999 * 119.99822 * 334.93192 * 7 5 4 34 34 H 0.96999 * 119.99782 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.49735 * 178.68382 * 16 5 4 36 36 H 1.09002 * 109.49890 * 58.58259 * 16 5 4 37 37 H 1.09000 * 109.58514 * 294.85138 * 17 16 5 38 38 H 1.08999 * 109.59044 * 174.42234 * 17 16 5 39 39 H 1.09000 * 109.47543 * 59.99570 * 21 19 18 40 40 H 1.09008 * 109.47338 * 300.00084 * 21 19 18 41 41 H 1.09000 * 109.46884 * 60.00335 * 22 21 19 42 42 H 1.09000 * 109.46955 * 299.99651 * 22 21 19 43 43 H 1.07995 * 122.54106 * 359.95411 * 24 23 22 44 44 H 1.08001 * 122.53997 * 179.97438 * 25 24 23 45 45 H 1.07998 * 125.20163 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0382 -0.7238 1.2456 5 6 1.6409 -2.2000 1.1728 6 1 0.5563 -2.2810 1.0998 7 7 2.1012 -2.8894 2.3808 8 6 1.4656 -4.0258 2.8048 9 1 0.6247 -4.4136 2.2490 10 6 1.9021 -4.6793 3.9490 11 7 2.9266 -4.2064 4.6266 12 14 1.0347 -6.2291 4.5278 13 1 1.1163 -7.2669 3.4687 14 1 1.6881 -6.7300 5.7637 15 1 -0.3903 -5.9223 4.8113 16 6 2.2842 -2.8430 -0.0578 17 6 1.7740 -2.1422 -1.3209 18 7 2.0225 -0.6997 -1.1943 19 6 2.6945 -0.0319 -2.1531 20 8 2.8932 1.1589 -2.0370 21 6 3.1988 -0.7649 -3.3694 22 6 3.9206 0.2174 -4.2940 23 6 4.4255 -0.5157 -5.5100 24 6 3.7443 -0.6837 -6.6445 25 6 4.4135 -1.3926 -7.6272 26 6 5.6385 -1.7997 -7.2910 27 16 6.0059 -1.2741 -5.6532 28 1 -0.3634 -1.0276 0.0064 29 1 -0.3634 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 1.5986 -0.2722 2.1350 32 1 3.1239 -0.6412 1.2938 33 1 2.8562 -2.5408 2.8801 34 1 3.2318 -4.6633 5.4260 35 1 2.0199 -3.8998 -0.0962 36 1 3.3677 -2.7405 0.0026 37 1 0.7043 -2.3205 -1.4308 38 1 2.3025 -2.5290 -2.1922 39 1 2.3574 -1.2111 -3.8996 40 1 3.8904 -1.5488 -3.0604 41 1 4.7620 0.6638 -3.7640 42 1 3.2287 1.0009 -4.6029 43 1 2.7461 -0.2964 -6.7855 44 1 3.9770 -1.6002 -8.5930 45 1 6.3043 -2.3626 -7.9284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044851662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:04 Heat of formation + Delta-G solvation = -2.236112 kcal Electronic energy + Delta-G solvation = -24768.993618 eV Core-core repulsion = 21298.847841 eV Total energy + Delta-G solvation = -3470.145777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31110 -38.29071 -37.60618 -34.54981 -33.99842 -32.39260 -31.81423 -29.47186 -28.82201 -27.28547 -25.41359 -24.15513 -23.01401 -22.91525 -21.52839 -20.17965 -19.47533 -18.27282 -17.69593 -17.04891 -16.69342 -15.87075 -15.75120 -15.43259 -14.91232 -14.20222 -14.05561 -13.88492 -13.67469 -13.47196 -13.26442 -13.11437 -12.91429 -12.82349 -12.60791 -12.39880 -12.17299 -12.02397 -11.79639 -11.61702 -11.28296 -11.25864 -10.93749 -10.88663 -10.87521 -10.76328 -10.46248 -10.24718 -9.79918 -9.66462 -9.62771 -8.92118 -8.88326 -8.71844 -8.48800 -7.00000 -5.79554 -3.08892 0.74268 1.39389 1.77434 2.48307 2.68496 3.08075 3.41047 3.45698 3.46862 4.33707 4.55410 4.74846 4.79463 4.82591 4.89623 5.06896 5.17020 5.23379 5.26889 5.30235 5.33074 5.40982 5.47165 5.56658 5.59512 5.63386 5.75448 5.81033 5.85511 5.90556 5.91688 6.04637 6.06442 6.17512 6.25058 6.28961 6.37952 6.45795 6.53256 6.63799 6.89298 7.03197 7.53793 7.65398 8.23995 8.38739 9.49791 10.07532 10.42046 11.42925 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.002631 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.080779 B =10638.389950 C =11635.134029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.105 3.895 18 N -0.600 5.600 19 C 0.515 3.485 20 O -0.551 6.551 21 C -0.135 4.135 22 C -0.033 4.033 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.133 4.133 26 C -0.219 4.219 27 S 0.099 5.901 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 7.195 -23.003 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.333 5.333 19 C 0.304 3.696 20 O -0.430 6.430 21 C -0.175 4.175 22 C -0.073 4.073 23 C -0.286 4.286 24 C -0.173 4.173 25 C -0.164 4.164 26 C -0.355 4.355 27 S 0.363 5.637 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.390 7.502 -21.925 23.296 hybrid contribution -1.323 -0.970 -0.476 1.708 sum 1.068 6.531 -22.402 23.359 Atomic orbital electron populations 1.22139 0.95103 1.02727 1.01829 1.21087 0.93999 0.97115 0.84038 0.88731 1.22142 1.01364 0.97299 0.96473 1.20188 0.96746 0.89141 0.87011 0.93129 1.42433 1.38198 1.29348 1.26443 1.19172 1.10386 1.01170 1.06411 0.91261 1.24746 0.98501 0.99468 0.98170 1.69651 1.27665 1.41355 1.19373 0.86291 0.78828 0.83246 0.77940 1.21271 1.21712 1.21277 1.22683 1.01243 1.00547 0.94832 1.21873 1.00970 0.79276 0.99683 1.48261 1.55063 1.09538 1.20431 1.20537 0.77600 0.87421 0.84080 1.90671 1.58035 1.15317 1.78970 1.21707 1.01909 0.99448 0.94457 1.19883 1.00731 0.96138 0.90555 1.24579 0.97659 1.06123 1.00232 1.20152 1.01722 1.02601 0.92833 1.20171 0.94655 1.00670 1.00896 1.25625 1.01394 1.08886 0.99587 1.84456 1.15722 1.52136 1.11411 0.91676 0.91390 0.92966 0.90564 0.91931 0.78291 0.93430 0.90655 0.92199 0.91430 0.90458 0.88634 0.88612 0.89900 0.89159 0.84293 0.84420 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.02 37.16 0.34 -1.68 16 2 C 0.14 2.01 3.19 -67.82 -0.22 1.80 16 3 H 0.09 1.44 7.01 -51.93 -0.36 1.07 16 4 C -0.13 -2.20 4.99 -26.83 -0.13 -2.33 16 5 C 0.18 3.34 2.53 -67.89 -0.17 3.16 16 6 H 0.05 0.95 6.43 -51.92 -0.33 0.62 16 7 N -0.72 -17.50 5.12 -53.39 -0.27 -17.78 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 12 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 17 C 0.11 1.31 5.93 -3.71 -0.02 1.29 16 18 N -0.60 -8.09 2.68 -165.48 -0.44 -8.53 16 19 C 0.52 6.99 7.70 -10.98 -0.08 6.90 16 20 O -0.55 -9.15 15.40 5.56 0.09 -9.07 16 21 C -0.13 -1.37 4.03 -27.89 -0.11 -1.48 16 22 C -0.03 -0.33 5.00 -27.88 -0.14 -0.47 16 23 C -0.17 -1.59 5.76 -36.00 -0.21 -1.80 16 24 C -0.14 -1.23 10.05 -41.21 -0.41 -1.64 16 25 C -0.13 -1.06 10.18 -41.21 -0.42 -1.48 16 26 C -0.22 -1.75 11.23 29.04 0.33 -1.43 16 27 S 0.10 0.91 23.33 -107.50 -2.51 -1.60 16 28 H 0.06 0.84 5.74 -51.93 -0.30 0.54 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 38 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.10 0.94 7.69 -51.92 -0.40 0.54 16 41 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -31.13 372.57 -10.50 -41.63 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.02 Total: 8.70 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.66 Total: -8.82 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.01 Total: -53.37 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.13 -10.50 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.394 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds